| Literature DB >> 21698093 |
Monika H E Christensen1, Simon N Dankel, Yngve Nordbø, Jan Erik Varhaug, Bjørg Almås, Ernst A Lien, Gunnar Mellgren.
Abstract
BACKGROUND: Primary hyperparathyroidism (PHPT) is characterised by increased production of parathyroid hormone (PTH) resulting in elevated serum calcium levels. The influence on bone metabolism with altered bone resorption is the most studied clinical condition in PHPT. In addition to this, patients with PHPT are at increased risk of non-skeletal diseases, such as impaired insulin sensitivity, arterial hypertension and increased risk of death by cardiovascular diseases (CVD), possibly mediated by a chronic low-grade inflammation. The aim of this study was to investigate whether adipose tissue reflects the low-grade inflammation observed in PHPT patients. METHODOLOGY/PRINCIPALEntities:
Mesh:
Substances:
Year: 2011 PMID: 21698093 PMCID: PMC3117792 DOI: 10.1371/journal.pone.0020481
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primers used in this study.
| GeneBank ID | Genes | PCR primers (5′-3′) | Probe nr (UPL) | Product size (bp) |
| NM_004797.2 |
|
| 41 | 113 |
| NM_002982.3 |
|
| 40 | 93 |
| NM_000591.2 (tv 1) NM_0010400211 (tv 2) |
|
| 74 | 95 |
| NM_013402.4 |
|
| 26 | 81 |
| NM_004104.4 |
|
| 11 | 92 |
| NM_000803.4 (tv 1) NM_001113534.1 (tv 2) NM_001113536.1 (tv 3) NM_001113535.1 (tv 4) |
|
| 81 | 74 |
| NM_000584.2 |
|
| 72 | 62 |
| NM_004994.2 |
|
| 6 | 67 |
| NM_005063.4 |
|
| 82 | 65 |
UPL, Universal ProbeLibrary probes (Roche Applies Science); tv, transcript variant.
Anthropometric and biochemical measurements of the PHPT patient and control groups.
| PHPT(n = 16, 14 female) | Control(n = 15, 11 female) | ||
| Median (IQR) | Median (IQR) | P-value | |
|
| 60.0 (49.3–69.2) | 47.0 (38.0–56.0) | 0.01 |
|
| 25.4 (23.5–27.2) | 25.0 (22.9–26.9) | 0.78 |
|
| 11.5 (9.6–15.6) | 3.3 (2.1–4.2) | <0.001 |
|
| 1.47 (1.41–1.54) | 1.24 (1.21–1.25) | <0.001 |
|
| 0.87 (0.70–1.01) | 1.08 (0.91–1.23) | 0.02 |
|
| 93.0 (74.0–119) | 68.0 (51.5–82.0) | 0.01 |
|
| 1.40 (0.75–1.82) | 1.12 (0.57–1.83) | 0.90 |
|
| 16.6 (15.2–18.1) | 17.8 (15.3–19.1) | 0.45 |
|
| 60.5 (52.8–63.8) | 69.5 (54.5–78.3) | 0.24 |
|
| 5.6 (5.1–5.9) | 4.7 (4.2–6.2) | 0.23 |
|
| 3.6 (3.2–3.9) | 2.9 (2.5–3.9) | 0.13 |
|
| 1.5 (1.2–2.4) | 1.5 (1.2–1.7) | 0.68 |
Reference values are shown in parentheses. P-values are based on Mann-Whitney U test. PHPT, primary hyperparathyroidism; Control, patients operated for benign thyroid disease without known parathyroid or inflammatory disease; IQR, interquartile range; BMI, body-mass index; iCa, ionised calcium; APL, alkaline phosphatase; TSH, thyroid stimulating hormone; FT4, free thyroxin; LDL-cholesterol, low-density lipoprotein cholesterol; HDL-cholesterol, high-density lipoprotein cholesterol.
Figure 1Correspondence analysis showing projection of samples.
Patients with primary hyperparathyroidism are shown with red dots and the control group are shown with blue squares. The first principal component shows the largest variance in the dataset with 8.83% and the second principal component represents the second largest variance with 6.69%. Patients with primary hyperparathyroidism are separated from the control group along both axes.
Top 10 up-regulated and down-regulated genes in patients with PHPT compared to controls, based on Significance Analysis of Microarrays (SAM-analysis) (q-value<0.05).
| Signal Intensity | FC | |||
| Gene | Definition | PHPT | Ctr | PHPT/Ctr |
| S100A9 | S100 calcium binding protein A9 (calgranulin B) | 2429 | 699 | 3,13 |
| S100A8 | S100 calcium binding protein A8 (calgranulin A) | 2367 | 660 | 2,97 |
| MMP9 | matrix metallopeptidase 9 | 647 | 229 | 2,55 |
| CCL8 | chemokine (C-C motif) ligand 8 | 2187 | 941 | 2,31 |
| CSF3R | colony stimulating factor 3 receptor (granulocyte), transcript variant 4 | 653 | 290 | 2,25 |
| TYROBP | tyrosine kinase binding protein, transcript variant 1 | 1917 | 693 | 2,20 |
| ALOX5AP | arachidonate 5-lipoxygenase-activating protein | 2476 | 940 | 2,16 |
| CCL13 | chemokine (C-C motif) ligand 13 | 824 | 387 | 2,16 |
| THBS1 | thrombospondin 1 | 2133 | 1068 | 2,13 |
| CD163 | CD163 molecule, transcript variant 2 | 1295 | 450 | 2,11 |
| FADS1 | fatty acid desaturase 1 | 627 | 1461 | −2,18 |
| CD300LG | CD300 molecule-like family member g | 6838 | 9423 | −1,76 |
| KIF25 | kinesin family member 25, transcript variant 1 | 394 | 598 | −1,74 |
| ALDOC | aldolase C, fructose-bisphosphate | 6331 | 8326 | −1,72 |
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) | 18728 | 27771 | −1,68 |
| CA4 | carbonic anhydrase IV | 2516 | 3334 | −1,66 |
| THBS4 | thrombospondin 4 | 2738 | 3779 | −1,66 |
| PPP1R1B | protein phosphatase 1, regulatory (inhibitor) subunit 1B, transcript variant 2 | 2320 | 3908 | −1,66 |
| GPIHBP1 | glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 | 2882 | 3732 | −1,65 |
| ATP1A2 | ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide | 1107 | 1722 | −1,60 |
PHPT, primary hyperparathyroidism; Ctr, patients operated for benign thyroid disease without known parathyroid or inflammatory disease; FC, fold change (based on log-transformed data).
Figure 2Functional categorization of differentially expressed genes (Biological Process and Molecular Function).
Gene expression in subcutaneous adipose tissue in patients with primary hyperparathyroidism was compared to a control group. Over-represented Biological Processes categories and Molecular Function categories among the differentially expressed genes (q-value<0.05) were found using PANTHER. Bonferroni correction for multiple testing was done and a p-value<0.01 was used as inclusion criterion for categories. The colour intensity displays the statistical significance (−log p-value) of over- and under-represented PANTHER functional categories. Numbers in the table presents the percentage of genes mapping to a given category, e.g. 23% of the 347 up-regulated genes belonged to the Biological Process category Immunity and defense. The overall distribution of a term among all human NCBI genes (25,431) are stated in the first column, e.g. 5% of the genes are expected to map to the Biological Process category Immunity and defense, hence this category is significantly over-represented among the up-regulated genes in patients with PHPT compared to controls. Ref, Reference (based on all human NCBI genes); PHPT patients with primary hyperparathyroidism; Ctr, patients operated for benign thyroid disease without known parathyroid or inflammatory disease; Arrow up, up-regulated/higher expressed genes in patients with PHTP compared to controls; Arrow down, down-regulated/less expressed genes in patients with PHPT compared to controls.
Validation of selected genes by qPCR.
| Illumina, Signal Intensity | qPCR, Target gene/TBP | |||||
| PHPT(n = 16) | Control(n = 15) | q-value | PHPT(n = 16) | Control(n = 15) | P-value | |
| Median | Median | Median (range) | Median (range) | |||
| ADIPOQ | 2512 | 3182 | 0.191 | 1.69 (0.66–2.59) | 1.75 (1.29–2.88) | 0.252 |
| CCL2 | 1404 | 638 | 0.066 | 0.54 (0.10–12.89) | 0.19 (0.06–0.92) | 0.016 |
| CD14 | 2092 | 909 | <0.001 | 1.00 (0.25–3.22) | 0.35 (0.18–0.72) | <0.001 |
| FADS1 | 627 | 1461 | 0.029 | 0.45 (0.05–2.29) | 1.18 (0.16–3.96) | 0.040 |
| FASN | 19111 | 28686 | 0.028 | 2.35 (0.61–9.21) | 4.58 (1.33–8.0) | 0.016 |
| FOLR2 | 970 | 423 | 0.054 | 0.47 (0.09–1.29) | 0.15 (0.04–0.56) | 0.001 |
| IL8 | 307 | 190 | 0.109 | 1.02 (0.01–84.96) | 0.08 (0.01–5.25) | 0.022 |
| MMP9 | 647 | 229 | <0.001 | 3.33 (0.22–11.54) | 0.53 (0.06–2.51) | 0.001 |
| SCD | 18728 | 27771 | 0.028 | 0.35 (0.05–1.75) | 0.70 (0.19–2.13) | 0.030 |
Signal intensity measured by Illumina and median values of target genes relative to the control gene TATA-binding protein (TBP) is shown. P-values are based on Mann-Whitney U test. PHPT, primary hyperparathyroidism; Control, patients operated for benign thyroid disease without known parathyroid or inflammatory disease; q-value, adjusted p-values found using an optimised false discovery rate (FDR) approach.
Enrichment of transcription factor binding sites in the differentially expressed genes.
| TF | TF Class | TF Supergroup | BG hits | BG non-hits | TG hits | TG non-hits | Z-score | Fisher score |
|
| ||||||||
| SPIB | ETS | vertebrate | 13162 | 1988 | 274 | 28 | 15.02 | 0.026 |
| GABPA | ETS | vertebrate | 5381 | 9769 | 122 | 180 | 7.85 | 0.046 |
| RORA_1 | Nuclear receptor | vertebrate | 7024 | 8126 | 161 | 141 | 5.43 | 0.010 |
| FOS | bZIP | vertebrate | 9677 | 5473 | 208 | 94 | 5.22 | 0.041 |
| ELK1 | ETS | vertebrate | 10697 | 4453 | 229 | 73 | 5.02 | 0.026 |
|
| ||||||||
| ESR1 | Nuclear receptor | vertebrate | 439 | 14711 | 13 | 226 | 7.79 | 0.025 |
| ELK1 | ETS | vertebrate | 10697 | 4453 | 189 | 50 | 6.91 | 0.002 |
| MZF1_1-4 | Zn-finger, C2H2 | vertebrate | 13090 | 2060 | 216 | 23 | 6.90 | 0.041 |
| SP1 | Zn-finger, C2H2 | vertebrate | 9192 | 5958 | 170 | 69 | 6.36 | 0.001 |
| NF-kappaB | REL | vertebrate | 5960 | 9190 | 111 | 128 | 6.19 | 0.016 |
| HNF4A | Nuclear receptor | vertebrate | 5541 | 9609 | 112 | 127 | 5.92 | 0.001 |
| RREB1 | Zn-finger, C2H2 | vertebrate | 817 | 14333 | 20 | 219 | 5.69 | 0.037 |
TF, transcription factor; BG, background gene (expected randomly); TG, target gene.