Literature DB >> 21697090

Snapshots of enzymatic Baeyer-Villiger catalysis: oxygen activation and intermediate stabilization.

Roberto Orru1, Hanna M Dudek, Christian Martinoli, Daniel E Torres Pazmiño, Antoine Royant, Martin Weik, Marco W Fraaije, Andrea Mattevi.   

Abstract

Baeyer-Villiger monooxygenases catalyze the oxidation of carbonylic substrates to ester or lactone products using NADPH as electron donor and molecular oxygen as oxidative reactant. Using protein engineering, kinetics, microspectrophotometry, crystallography, and intermediate analogs, we have captured several snapshots along the catalytic cycle which highlight key features in enzyme catalysis. After acting as electron donor, the enzyme-bound NADP(H) forms an H-bond with the flavin cofactor. This interaction is critical for stabilizing the oxygen-activating flavin-peroxide intermediate that results from the reaction of the reduced cofactor with oxygen. An essential active-site arginine acts as anchoring element for proper binding of the ketone substrate. Its positively charged guanidinium group can enhance the propensity of the substrate to undergo a nucleophilic attack by the flavin-peroxide intermediate. Furthermore, the arginine side chain, together with the NADP(+) ribose group, forms the niche that hosts the negatively charged Criegee intermediate that is generated upon reaction of the substrate with the flavin-peroxide. The fascinating ability of Baeyer-Villiger monooxygenases to catalyze a complex multistep catalytic reaction originates from concerted action of this Arg-NADP(H) pair and the flavin subsequently to promote flavin reduction, oxygen activation, tetrahedral intermediate formation, and product synthesis and release. The emerging picture is that these enzymes are mainly oxygen-activating and "Criegee-stabilizing" catalysts that act on any chemically suitable substrate that can diffuse into the active site, emphasizing their potential value as toolboxes for biocatalytic applications.

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Year:  2011        PMID: 21697090      PMCID: PMC3190734          DOI: 10.1074/jbc.M111.255075

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  32 in total

1.  Self-sufficient Baeyer-Villiger monooxygenases: effective coenzyme regeneration for biooxygenation by fusion engineering.

Authors:  Daniel E Torres Pazmiño; Radka Snajdrova; Bert-Jan Baas; Michael Ghobrial; Marko D Mihovilovic; Marco W Fraaije
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

2.  Tracking flavin conformations in protein crystal structures with Raman spectroscopy and QM/MM calculations.

Authors:  Asmund Kjendseth Røhr; Hans-Petter Hersleth; K Kristoffer Andersson
Journal:  Angew Chem Int Ed Engl       Date:  2010-03-22       Impact factor: 15.336

3.  Coenzyme binding during catalysis is beneficial for the stability of 4-hydroxyacetophenone monooxygenase.

Authors:  Robert H H van den Heuvel; Nora Tahallah; Nanne M Kamerbeek; Marco W Fraaije; Willem J H van Berkel; Dick B Janssen; Albert J R Heck
Journal:  J Biol Chem       Date:  2005-07-27       Impact factor: 5.157

4.  Mechanistic studies of cyclohexanone monooxygenase: chemical properties of intermediates involved in catalysis.

Authors:  D Sheng; D P Ballou; V Massey
Journal:  Biochemistry       Date:  2001-09-18       Impact factor: 3.162

5.  Hydrogen peroxide elimination from C4a-hydroperoxyflavin in a flavoprotein oxidase occurs through a single proton transfer from flavin N5 to a peroxide leaving group.

Authors:  Jeerus Sucharitakul; Thanyaporn Wongnate; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2011-03-19       Impact factor: 5.157

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Crystal structures of cyclohexanone monooxygenase reveal complex domain movements and a sliding cofactor.

Authors:  I Ahmad Mirza; Brahm J Yachnin; Shaozhao Wang; Stephan Grosse; Hélène Bergeron; Akihiro Imura; Hiroaki Iwaki; Yoshie Hasegawa; Peter C K Lau; Albert M Berghuis
Journal:  J Am Chem Soc       Date:  2009-07-01       Impact factor: 15.419

8.  Kinetic mechanism of phenylacetone monooxygenase from Thermobifida fusca.

Authors:  Daniel E Torres Pazmiño; Bert-Jan Baas; Dick B Janssen; Marco W Fraaije
Journal:  Biochemistry       Date:  2008-03-06       Impact factor: 3.162

9.  Colouring cryo-cooled crystals: online microspectrophotometry.

Authors:  John McGeehan; Raimond B G Ravelli; James W Murray; Robin Leslie Owen; Florent Cipriani; Sean McSweeney; Martin Weik; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  39 in total

1.  Kinetic Mechanism of the Dechlorinating Flavin-dependent Monooxygenase HadA.

Authors:  Panu Pimviriyakul; Kittisak Thotsaporn; Jeerus Sucharitakul; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2017-02-03       Impact factor: 5.157

2.  The reaction kinetics of 3-hydroxybenzoate 6-hydroxylase from Rhodococcus jostii RHA1 provide an understanding of the para-hydroxylation enzyme catalytic cycle.

Authors:  Jeerus Sucharitakul; Chanakan Tongsook; Danaya Pakotiprapha; Willem J H van Berkel; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2013-10-15       Impact factor: 5.157

3.  Mapping the substrate binding site of phenylacetone monooxygenase from Thermobifida fusca by mutational analysis.

Authors:  Hanna M Dudek; Gonzalo de Gonzalo; Daniel E Torres Pazmiño; Piotr Stepniak; Lucjan S Wyrwicz; Leszek Rychlewski; Marco W Fraaije
Journal:  Appl Environ Microbiol       Date:  2011-07-01       Impact factor: 4.792

4.  Hijacking nature--new approaches to unravel enzyme mechanisms and engineer improved biocatalysts.

Authors:  Ivan Campeotto; Carlos G Acevedo-Rocha
Journal:  EMBO Rep       Date:  2013-03-12       Impact factor: 8.807

5.  Cloning, Baeyer-Villiger biooxidations, and structures of the camphor pathway 2-oxo-Δ(3)-4,5,5-trimethylcyclopentenylacetyl-coenzyme A monooxygenase of Pseudomonas putida ATCC 17453.

Authors:  Hannes Leisch; Rong Shi; Stephan Grosse; Krista Morley; Hélène Bergeron; Miroslaw Cygler; Hiroaki Iwaki; Yoshie Hasegawa; Peter C K Lau
Journal:  Appl Environ Microbiol       Date:  2012-01-20       Impact factor: 4.792

6.  Beyond the Protein Matrix: Probing Cofactor Variants in a Baeyer-Villiger Oxygenation Reaction.

Authors:  Christian Martinoli; Hanna M Dudek; Roberto Orru; Dale E Edmondson; Marco W Fraaije; Andrea Mattevi
Journal:  ACS Catal       Date:  2013       Impact factor: 13.084

Review 7.  Flavoenzymes: versatile catalysts in biosynthetic pathways.

Authors:  Christopher T Walsh; Timothy A Wencewicz
Journal:  Nat Prod Rep       Date:  2013-01       Impact factor: 13.423

8.  Exploring the structural basis of substrate preferences in Baeyer-Villiger monooxygenases: insight from steroid monooxygenase.

Authors:  Stefano Franceschini; Hugo L van Beek; Alessandra Pennetta; Christian Martinoli; Marco W Fraaije; Andrea Mattevi
Journal:  J Biol Chem       Date:  2012-05-17       Impact factor: 5.157

9.  Contribution to catalysis of ornithine binding residues in ornithine N5-monooxygenase.

Authors:  Reeder Robinson; Insaf A Qureshi; Catherine A Klancher; Pedro J Rodriguez; John J Tanner; Pablo Sobrado
Journal:  Arch Biochem Biophys       Date:  2015-09-12       Impact factor: 4.013

10.  Role of Ser-257 in the sliding mechanism of NADP(H) in the reaction catalyzed by the Aspergillus fumigatus flavin-dependent ornithine N5-monooxygenase SidA.

Authors:  Carolyn Shirey; Somayesadat Badieyan; Pablo Sobrado
Journal:  J Biol Chem       Date:  2013-09-26       Impact factor: 5.157

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