Literature DB >> 21696881

From steroid receptors to cytokines: the thermodynamics of self-associating systems.

Keith D Connaghan1, Amie D Moody, James P Robblee, James R Lambert, David L Bain.   

Abstract

Since 1987, the Gibbs Conference on Biothermodynamics has maintained a focus on understanding the quantitative aspects of gene regulatory systems. These studies coupled rigorous techniques with exact theory to dissect the linked reactions associated with bacterial and lower eukaryotic gene regulation. However, only in the last ten years has it become possible to apply this approach to clinically relevant, human gene regulatory systems. Here we summarize our work on the thermodynamics of human steroid receptors and their interactions with multi-site promoter sequences, highlighting results not available from more traditional biochemical and structural approaches. Noting that the Gibbs Conference has also served as a vehicle to promote the broader use of thermodynamics in understanding biology, we then discuss collaborative work on the hydrodynamics of a cytokine implicated in tumor suppression, prostate derived factor (PDF).
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21696881      PMCID: PMC3535432          DOI: 10.1016/j.bpc.2011.04.013

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  44 in total

1.  Genome-wide scan of Swedish families with hereditary prostate cancer: suggestive evidence of linkage at 5q11.2 and 19p13.3.

Authors:  Fredrik Wiklund; Elizabeth M Gillanders; Julie A Albertus; Anders Bergh; Jan-Erik Damber; Monica Emanuelsson; Diana L Freas-Lutz; Derek E Gildea; Ingela Göransson; MaryPat S Jones; Björn-Anders Jonsson; Fredrik Lindmark; Carol J Markey; Erica L Riedesel; Elisabeth Stenman; Jeffry M Trent; Henrik Grönberg
Journal:  Prostate       Date:  2003-12-01       Impact factor: 4.104

2.  Thermodynamic analysis of progesterone receptor-promoter interactions reveals a molecular model for isoform-specific function.

Authors:  Keith D Connaghan-Jones; Aaron F Heneghan; Michael T Miura; David L Bain
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-02       Impact factor: 11.205

3.  Thermodynamic dissection of progesterone receptor interactions at the mouse mammary tumor virus promoter: monomer binding and strong cooperativity dominate the assembly reaction.

Authors:  Keith D Connaghan-Jones; Aaron F Heneghan; Michael T Miura; David L Bain
Journal:  J Mol Biol       Date:  2008-01-30       Impact factor: 5.469

4.  "Footprint" titrations yield valid thermodynamic isotherms.

Authors:  M Brenowitz; D F Senear; M A Shea; G K Ackers
Journal:  Proc Natl Acad Sci U S A       Date:  1986-11       Impact factor: 11.205

5.  Multiple specific CytR binding sites at the Escherichia coli deoP2 promoter mediate both cooperative and competitive interactions between CytR and cAMP receptor protein.

Authors:  L T Perini; E A Doherty; E Werner; D F Senear
Journal:  J Biol Chem       Date:  1996-12-27       Impact factor: 5.157

6.  Nonsteroidal anti-inflammatory drug-activated gene-1 over expression in transgenic mice suppresses intestinal neoplasia.

Authors:  Seung Joon Baek; Ryuji Okazaki; Seong-Ho Lee; Jeanelle Martinez; Jong-Sik Kim; Kiyoshi Yamaguchi; Yuji Mishina; David W Martin; Ahmed Shoieb; Michael F McEntee; Thomas E Eling
Journal:  Gastroenterology       Date:  2006-09-19       Impact factor: 22.682

7.  The opposing transcriptional activities of the two isoforms of the human progesterone receptor are due to differential cofactor binding.

Authors:  P H Giangrande; E A Kimbrel; D P Edwards; D P McDonnell
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

8.  Quantitative model for gene regulation by lambda phage repressor.

Authors:  G K Ackers; A D Johnson; M A Shea
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

9.  Estrogen receptor isoform-specific regulation of endogenous gene expression in human osteoblastic cell lines expressing either ERalpha or ERbeta.

Authors:  David G Monroe; Barbara J Getz; Steven A Johnsen; B Lawrence Riggs; Sundeep Khosla; Thomas C Spelsberg
Journal:  J Cell Biochem       Date:  2003-10-01       Impact factor: 4.429

10.  Nonsteroidal anti-inflammatory drug-activated gene-1 expression inhibits urethane-induced pulmonary tumorigenesis in transgenic mice.

Authors:  Maria Cekanova; Seong-Ho Lee; Robert L Donnell; Mugdha Sukhthankar; Thomas E Eling; Susan M Fischer; Seung Joon Baek
Journal:  Cancer Prev Res (Phila)       Date:  2009-04-28
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