Literature DB >> 6461856

Quantitative model for gene regulation by lambda phage repressor.

G K Ackers, A D Johnson, M A Shea.   

Abstract

A statistical thermodynamic model has been developed to account for the cooperative interactions of the bacteriophage lambda repressor with the lambda right operator. The model incorporates a general theory for quantitatively interpreting cooperative site-specific equilibrium binding data. Values for all interaction parameters of the model have been evaluated at 37 degrees C, 0.2 M KCl, from results of DNase protection experiments in vitro [A. D. Johnson, B. J. Meyer, & M. Ptashne, Proc. Natl. Acad. Sci. USA (1979) 76, 5061-5065]. With these values, the model predicts repression curves at the divergent promoters PR and PRM that control transcription of genes coding for the regulatory proteins cro and repressor, respectively. At physiological repressor concentrations, repression at PR is predicted to be nearly complete whereas PRM is predicted to remain highly active. The results demonstrate the importance of cooperative interactions between repressor dimers bound to the adjacent operator sites OR1 and OR2 in maintaining a stable lysogenic state and in allowing efficient switchover to the lytic state during induction.

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Year:  1982        PMID: 6461856      PMCID: PMC345914          DOI: 10.1073/pnas.79.4.1129

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

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Authors:  F Sanger; A R Coulson
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2.  On the analysis of linear binding effects associated with curved Scatchard plots.

Authors:  G Schwarz
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Authors:  D J Galas; A Schmitz
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Journal:  Biochemistry       Date:  1976-11-30       Impact factor: 3.162

5.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
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6.  Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects.

Authors:  P H von Hippel; A Revzin; C A Gross; A C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1974-12       Impact factor: 11.205

7.  Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.

Authors:  J D McGhee; P H von Hippel
Journal:  J Mol Biol       Date:  1974-06-25       Impact factor: 5.469

8.  Active form of two coliphage repressors.

Authors:  V Pirrotta; P Chadwick; M Ptashne
Journal:  Nature       Date:  1970-07-04       Impact factor: 49.962

9.  Control of lambda repressor synthesis.

Authors:  L Reichardt; A D Kaiser
Journal:  Proc Natl Acad Sci U S A       Date:  1971-09       Impact factor: 11.205

10.  Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: measurement of DNA-bound Escherichia coli lac repressor in vivo.

Authors:  Y Kao-Huang; A Revzin; A P Butler; P O'Conner; D W Noble; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

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  201 in total

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8.  Revealing strengths and weaknesses of methods for gene network inference.

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9.  Predicting gene-regulation functions: lessons from temperate bacteriophages.

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10.  Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration.

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Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-01-06
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