| Literature DB >> 21694673 |
Thaiz Batista Azevedo Rangel1, Ana Maria Sampaio Assreuy, Alana de Freitas Pires, Amanda Uliana de Carvalho, Raquel Guimarães Benevides, Rafael da Conceição Simões, Helton Colares da Silva, Maria Júlia Barbosa Bezerra, Antonia Samia Fernandes do Nascimento, Kyria Santiago do Nascimento, Celso Shiniti Nagano, Alexandre Holanda Sampaio, Plínio Delatorre, Bruno Anderson Matias da Rocha, Patricia Machado Bueno Fernandes, Benildo Sousa Cavada.
Abstract
DwL, a lectin extracted from the seeds of Dioclea wilsonii, is a metalloprotein with strong agglutinating activity against rabbit and ABO erythrocytes, inhibited by glucose and mannose. DwL was purified by affinity chromatography on a Sephadex G-50 column and ion exchange chromatography on a HiTrap SP XL column. SDS-PAGE revealed three electrophoretic bands corresponding to the α (25,634 ± 2 Da), β (12,873 ± 2 Da) and γ (12,779 ± 2 Da) chains. Protein sequencing was done by Tandem Mass Spectrometry. The primary sequence featured 237 amino acids and was highly homologous to other reported Diocleinae lectins. A complete X-ray dataset was collected at 2.0 Å for X-Man-complexed DWL crystals produced by the vapor diffusion method. The crystals were orthorhombic and belonged to the space group I222, with the unit-cell parameters a = 59.6, b = 67.9 and c = 109.0 Å. DWL differed in potency from other ConA-like lectins and was found to induce neutrophil migration in rats, making it particularly useful in structural/functional studies of this class of proteins.Entities:
Mesh:
Substances:
Year: 2011 PMID: 21694673 PMCID: PMC6264520 DOI: 10.3390/molecules16065087
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Purification of lectin from the seeds of Dioclea wilsonii (DwL). (a) Partial purification of DwL by affinity chromatography on a Sephadex G-50 column. The column was equilibrated and eluted with 0.1 M Tris-HCl buffer (pH 7.4) containing 0.15 M NaCl to remove the unbound proteins. Lectin (*Peak II) was recovered with 0.2 M Glucose or with 0.1 M Glycine buffer (pH 2.6) containing 0.15 M NaCl. (b) Purification of DwL by cation exchange chromatography on a SP Sepharose™ XL column using peak II from the affinity chromatography step. The column was equilibrated and eluted by a saline gradient (0–1 M NaCl) to remove contaminants (Peak I). Lectin (*Peak II) was recovered with Acetate buffer (pH 4.5). (c) SDS-polyacrylamide gel electrophoresis (15%) of DwL in the presence of β-mercaptoethanol. Lane 1: molecular mass markers [phophorylase b (97 kDa), albumin (66 kDa), ovalbumin (45 kDa), carbonic anhydrase (30 kDa), trypsin inhibitor (20.1 kDa) and α-lactalbumin (14.4 kDa)]. Lanes 2 and 3: Peak II of the Sephadex G-50 column. Lanes 4 and 5: Peak II of the SP Sepharose™ XL column.
Overall protein recovery and haemagglutinating activity of Dioclea wilsonii seeds at various stages of purification.
| Fractions * | V (mL) | Protein | Hemagglutinating activity † | Minimum Concentration(mg/mL) | Purification | ||||
|---|---|---|---|---|---|---|---|---|---|
| mg/mL | Total | % | U.H./mL | Total | Specific | ||||
| Total Extract | 30 | 145.62 | 4368.6 | 100 | 131072 | 3932160 | 900.09 | 1.11 × 10−3 | 1 |
| Sephadex G-50 PII | 14 | 4.26 | 59.64 | 1.36 | 32768 | 458752 | 7692.02 | 1.3 × 10−4 | 8.5 |
| HiTrap SP XL PII | 2 | 1.127 | 2.254 | 0.77 | 65536 | 131072 | 50150.85 | 1.3 × 10−5 | 55.72 |
* All fractions were recovered after dialysis and freeze drying and tested in rabbit erythrocytes; Data obtained with trypsin treated erythrocytes.
Figure 2Stability of Dioclea wilsonii (DwL) hemagglutinating activity. (a) DwL thermostability. (b) DwL metal dependence. HA against trypsinized rabbit erythrocytes (0.2 M ultrapure EDTA followed by 0.15 M ultrapure NaCl) in presence or not of CaCl2 and MnCl2.
Figure 3Deconvoluted mass spectra of lectin from the seeds of Dioclea wilsonii (DwL) acquired by ESI ionization in a hybrid quadrupole/ion mobility separator/orthogonal acceleration time-of-flight mass spectrometer.
Figure 4Complete amino acid sequence of lectin from the seeds of Dioclea wilsonii (DwL). Peptide fragments obtained by degradation of DwL with the endoproteinases trypsin (T) and chymotrypsin (C).
Sequenced peptides of D. wilsonii lectin (DwL) and their respective molecular masses.
| Peptide | Experimental Mass (Da) | Sequence |
|---|---|---|
| T1 | 3254.5566 | ADTIVAVELDSYPNTDIGDPNYPHIGIDIK |
| T2 | 1373.7165 | VGTVHISYNSVAK |
| T3 | 1108.5643 | VGLSATTGLYK |
| T4 | 1512.7244 | ETNTILSWSFTSK |
| T5 | 1845.8464 | TNSIADENSLHFSFHK |
| T6 | 2865.4045 | FSQNPKDLILQGDAFTDSDGNLELTK |
| T7 | 1472.7366 | ALFYAPVHIWEK |
| T8 | 1715.9243 | SAVVASFDATFTFLIK |
| T9MS | 2864.2444 | SPDREPADGITFFIANTDTSIPSGSGGR |
| Q1 | 3515.7151 | DSYPNTDIGDPNYPHIGIDIKSIRSKSTARW |
| Q2 | 2303.1687 | MNQTGKVGTVHISYNSVAKRL |
| Q3 | 1394.7444 | NNVLPEWVRVGL |
| Q4 | 1090.5643 | KETNTILSW |
| Q5 | 1785.8522 | TKVSNSGDPQGNSVGRAL |
| Q6 | 1544.7365 | IKSPDREPADGITF |
| Q7 | 1691.8844 | FIANTDTSIPSGSGGRL |
Figure 5Primary sequence analysis. (a) Multiple alignment of rDGL, DVL, Dgui and DRL shows the highly conserved sequence in the secondary structure.
Figure 6Crystal of lectin from the seeds of Dioclea wilsonii complexed with X-Man (5-Bromo-4-chloro-3-indolyl-α-D-mannopiranoside). The crystal belongs to orthorhombic space group I222.
Refinement statistics for crystal structure data collection of the lectin from the seeds of Dioclea wilsonii (DwL).
| Data Collection * | |
|---|---|
| Point group | I222 |
| Unit cell parameters (Å) | |
| A | 59.6 |
| B | 67.9 |
| C | 109.0 |
| Unit cell angles (°) | |
| α = β = γ | 90 |
| Total number of reflection | 50274 (6863) |
| Total number of unique observations | 10483 (1526) |
| Resolution limit (Å) | 23.29–2.2 |
| Rmerge (%) a | 8.4 (24.1) |
| Completeness (%) | 97.1 (98.5) |
| Multiplicity (%) | 4.8 (4.5) |
| (I)/σ | 5.0 (1.8) |
| Matthews coefficient (Å3.Da−1) | 2.17 |
| Solvent content (%) | 43.28 |
| Wavelenght (Å) | 1.42 |
* Values in parenthesis represent the high resolution shell; a where I(hkl)i is the intensity of ith measurement of the reflection h and I(hkl) is the mean value of the I(hkl)i for all I measurements.
Figure 7Neutrophil migration induced by lectin from the seeds of Dioclea wilsonii (DwL). DwL (1 mg/Kg) was administered intraperitoneally. Five hours later, the exudates were collected by washing with 10 mL saline containing 5 UI heparin/mL. (a) Total and differential cell counts were performed. (b) Total protein was quantified (A = 595 nm). Results are mean values ± S.E.M. for each group of 6 animals. * p < 0.05 compared to saline (ANOVA-Bonferroni).