Literature DB >> 21691428

Preparative Protein Production from Inclusion Bodies and Crystallization: A Seven-Week Biochemistry Sequence.

Megan J Peterson1, W Kalani Snyder, Shelley Westerman, Benjamin J McFarland.   

Abstract

We describe how to produce and purify proteins from E. coli inclusion bodies by adapting versatile, preparative-scale techniques to the undergraduate laboratory schedule. This seven-week sequence of experiments fits into an annual cycle of research activity in biochemistry courses. Recombinant proteins are expressed as inclusion bodies, which are collected, washed, then solubilized in urea. Stepwise dialysis to dilute urea over the course of a week produces refolded protein. Column chromatography is used to purify protein into fractions, which are then analyzed with gel electrophoresis and concentration assays. Students culminate the project by designing crystallization trials in sitting-drop trays. Student evaluation of the experience has been positive, listing 5-12 new techniques learned, which are transferrable to graduate research in academia and industry.

Entities:  

Year:  2011        PMID: 21691428      PMCID: PMC3117595          DOI: 10.1021/ed100594h

Source DB:  PubMed          Journal:  J Chem Educ        ISSN: 0021-9584            Impact factor:   2.979


  11 in total

1.  Complex structure of the activating immunoreceptor NKG2D and its MHC class I-like ligand MICA.

Authors:  P Li; D L Morris; B E Willcox; A Steinle; T Spies; R K Strong
Journal:  Nat Immunol       Date:  2001-05       Impact factor: 25.606

2.  Thermodynamic analysis of degenerate recognition by the NKG2D immunoreceptor: not induced fit but rigid adaptation.

Authors:  Benjamin J McFarland; Roland K Strong
Journal:  Immunity       Date:  2003-12       Impact factor: 31.745

3.  Mutations designed to destabilize the receptor-bound conformation increase MICA-NKG2D association rate and affinity.

Authors:  Candice S E Lengyel; Lindsey J Willis; Patrick Mann; David Baker; Tanja Kortemme; Roland K Strong; Benjamin J McFarland
Journal:  J Biol Chem       Date:  2007-08-08       Impact factor: 5.157

4.  Temperature dependent 2nd derivative absorbance spectroscopy of aromatic amino acids as a probe of protein dynamics.

Authors:  Reza Esfandiary; Jagtar S Hunjan; Gerald H Lushington; Sangeeta B Joshi; C Russell Middaugh
Journal:  Protein Sci       Date:  2009-12       Impact factor: 6.725

5.  Purification and characterization of Taq polymerase: A 9-week biochemistry laboratory project for undergraduate students.

Authors:  Robert M Bellin; Mary K Bruno; Melissa A Farrow
Journal:  Biochem Mol Biol Educ       Date:  2010-01       Impact factor: 1.160

6.  Expression, purification, and analysis of unknown translation factors from Escherichia coli: A synthesis approach.

Authors:  Justin D Walter; Peter Littlefield; Scott Delbecq; Gerry Prody; P Clint Spiegel
Journal:  Biochem Mol Biol Educ       Date:  2010-01       Impact factor: 1.160

7.  From gene mutation to protein characterization.

Authors:  David A Moffet
Journal:  Biochem Mol Biol Educ       Date:  2009-03       Impact factor: 1.160

8.  RNase one gene isolation, expression, and affinity purification models research experimental progression and culminates with guided inquiry-based experiments.

Authors:  Cheryl P Bailey
Journal:  Biochem Mol Biol Educ       Date:  2009-01       Impact factor: 1.160

9.  Using green and red fluorescent proteins to teach protein expression, purification, and crystallization.

Authors:  Yifeng Wu; Yangbin Zhou; Jiaping Song; Xiaojian Hu; Yu Ding; Zhihong Zhang
Journal:  Biochem Mol Biol Educ       Date:  2008-01       Impact factor: 1.160

10.  Effect of arginine on protein aggregation studied by fluorescence correlation spectroscopy and other biophysical methods.

Authors:  Ranendu Ghosh; Sunny Sharma; Krishnananda Chattopadhyay
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

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  4 in total

1.  Combining different design strategies for rational affinity maturation of the MICA-NKG2D interface.

Authors:  Samuel H Henager; Melissa A Hale; Nicholas J Maurice; Erin C Dunnington; Carter J Swanson; Megan J Peterson; Joseph J Ban; David J Culpepper; Luke D Davies; Lisa K Sanders; Benjamin J McFarland
Journal:  Protein Sci       Date:  2012-08-10       Impact factor: 6.725

2.  Implementing a Hybrid Expression Method That Allows Upper-Division Biochemistry Lab Students To Engage in a Full Protein Production Experience While Allowing Ample Time for Characterization Experiments.

Authors:  Josiah W Johnson; Christian D Mitchell; Anna M Deloach; Hannah E Simpson; Tori B Dunlap
Journal:  J Chem Educ       Date:  2019-11-12       Impact factor: 2.979

3.  An automatic refolding apparatus for preparative-scale protein production.

Authors:  Yanye Feng; Ming Zhang; Linlin Zhang; Ting Zhang; Jianfeng Ding; Yingping Zhuang; Xiaoning Wang; Zhong Yang
Journal:  PLoS One       Date:  2012-09-27       Impact factor: 3.240

4.  Affinity Based Nano-Magnetic Particles for Purification of Recombinant Proteins in Form of Inclusion Body

Authors:  Masoud Seyedinkhorasani; Reza Ahangari Cohan; Saeid Taghavi Fardood; Farzin Roohvand; Dariush Norouzian; Malihe Keramati
Journal:  Iran Biomed J       Date:  2019-12-07
  4 in total

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