Literature DB >> 21678136

Fragment screening using X-ray crystallography.

Thomas G Davies1, Ian J Tickle.   

Abstract

The fragment-based approach is now well established as an important component of modern drug discovery. A key part in establishing its position as a viable technique has been the development of a range of biophysical methodologies with sufficient sensitivity to detect the binding of very weakly binding molecules. X-ray crystallography was one of the first techniques demonstrated to be capable of detecting such weak binding, but historically its potential for screening was under-appreciated and impractical due to its relatively low throughput. In this chapter we discuss the various benefits associated with fragment-screening by X-ray crystallography, and describe the technical developments we have implemented to allow its routine use in drug discovery. We emphasize how this approach has allowed a much greater exploitation of crystallography than has traditionally been the case within the pharmaceutical industry, with the rapid and timely provision of structural information having maximum impact on project direction.

Mesh:

Substances:

Year:  2012        PMID: 21678136     DOI: 10.1007/128_2011_179

Source DB:  PubMed          Journal:  Top Curr Chem        ISSN: 0340-1022


  21 in total

1.  Models of protein-ligand crystal structures: trust, but verify.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  J Comput Aided Mol Des       Date:  2015-02-10       Impact factor: 3.686

Review 2.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

3.  Identification of an auxiliary druggable pocket in the DNA gyrase ATPase domain using fragment probes.

Authors:  Xiaojie Huang; Junsong Guo; Qi Liu; Qiong Gu; Jun Xu; Huihao Zhou
Journal:  Medchemcomm       Date:  2018-07-04       Impact factor: 3.597

Review 4.  Small molecules, big targets: drug discovery faces the protein-protein interaction challenge.

Authors:  Duncan E Scott; Andrew R Bayly; Chris Abell; John Skidmore
Journal:  Nat Rev Drug Discov       Date:  2016-04-11       Impact factor: 84.694

Review 5.  Computational functional group mapping for drug discovery.

Authors:  Olgun Guvench
Journal:  Drug Discov Today       Date:  2016-07-05       Impact factor: 7.851

6.  Cocktailed fragment screening by X-ray crystallography of the antibacterial target undecaprenyl pyrophosphate synthase from Acinetobacter baumannii.

Authors:  James H Thorpe; Ian D Wall; Robert H Sinnamon; Amy N Taylor; Robert A Stavenger
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-01-01       Impact factor: 1.056

Review 7.  Advantages of crystallographic fragment screening: functional and mechanistic insights from a powerful platform for efficient drug discovery.

Authors:  Disha Patel; Joseph D Bauman; Eddy Arnold
Journal:  Prog Biophys Mol Biol       Date:  2014-08-10       Impact factor: 3.667

Review 8.  Fragment screening and HIV therapeutics.

Authors:  Joseph D Bauman; Disha Patel; Eddy Arnold
Journal:  Top Curr Chem       Date:  2012

9.  Nuclear Magnetic Resonance Structures of GCN4p Are Largely Conserved When Ion Pairs Are Disrupted at Acidic pH but Show a Relaxation of the Coiled Coil Superhelix.

Authors:  Anne R Kaplan; Megan R Brady; Mark W Maciejewski; Richard A Kammerer; Andrei T Alexandrescu
Journal:  Biochemistry       Date:  2017-03-09       Impact factor: 3.162

10.  Serine is a natural ligand and allosteric activator of pyruvate kinase M2.

Authors:  Barbara Chaneton; Petra Hillmann; Liang Zheng; Agnès C L Martin; Oliver D K Maddocks; Achuthanunni Chokkathukalam; Joseph E Coyle; Andris Jankevics; Finn P Holding; Karen H Vousden; Christian Frezza; Marc O'Reilly; Eyal Gottlieb
Journal:  Nature       Date:  2012-10-14       Impact factor: 49.962

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