Literature DB >> 21642035

Integrated multiscale modeling of the nervous system: predicting changes in hippocampal network activity by a positive AMPA receptor modulator.

Jean-Marie C Bouteiller1, Sushmita L Allam, Eric Y Hu, Renaud Greget, Nicolas Ambert, Anne Florence Keller, Serge Bischoff, Michel Baudry, Theodore W Berger.   

Abstract

One of the fundamental characteristics of the brain is its hierarchical organization. Scales in both space and time that must be considered when integrating across hierarchies of the nervous system are sufficiently great as to have impeded the development of routine multilevel modeling methodologies. Complex molecular interactions at the level of receptors and channels regulate activity at the level of neurons; interactions between multiple populations of neurons ultimately give rise to complex neural systems function and behavior. This spatial complexity takes place in the context of a composite temporal integration of multiple, different events unfolding at the millisecond, second, minute, hour, and longer time scales. In this study, we present a multiscale modeling methodology that integrates synaptic models into single neuron, and multineuron, network models. We have applied this approach to the specific problem of how changes at the level of kinetic parameters of a receptor-channel model are translated into changes in the temporal firing pattern of a single neuron, and ultimately, changes in the spatiotemporal activity of a network of neurons. These results demonstrate how this powerful methodology can be applied to understand the effects of a given local process within multiple hierarchical levels of the nervous system.

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Year:  2011        PMID: 21642035      PMCID: PMC3397143          DOI: 10.1109/TBME.2011.2158605

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  9 in total

1.  How AMPA receptor desensitization depends on receptor occupancy.

Authors:  Antoine Robert; James R Howe
Journal:  J Neurosci       Date:  2003-02-01       Impact factor: 6.167

Review 2.  Hierarchical model of the population dynamics of hippocampal dentate granule cells.

Authors:  G A Chauvet; T W Berger
Journal:  Hippocampus       Date:  2002       Impact factor: 3.899

Review 3.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

Review 4.  Computational models of neuronal biophysics and the characterization of potential neuropharmacological targets.

Authors:  Michele Ferrante; Kim T Blackwell; Michele Migliore; Giorgio A Ascoli
Journal:  Curr Med Chem       Date:  2008       Impact factor: 4.530

5.  Modeling glutamatergic synapses: insights into mechanisms regulating synaptic efficacy.

Authors:  Jean-Marie C Bouteiller; Michel Baudry; Sushmita L Allam; Renaud J Greget; Serge Bischoff; Theodore W Berger
Journal:  J Integr Neurosci       Date:  2008-06       Impact factor: 2.117

6.  Effects of the potent ampakine CX614 on hippocampal and recombinant AMPA receptors: interactions with cyclothiazide and GYKI 52466.

Authors:  A C Arai; M Kessler; G Rogers; G Lynch
Journal:  Mol Pharmacol       Date:  2000-10       Impact factor: 4.436

7.  Computational studies of NMDA receptors: differential effects of neuronal activity on efficacy of competitive and non-competitive antagonists.

Authors:  Nicolas Ambert; Renaud Greget; Olivier Haeberlé; Serge Bischoff; Theodore W Berger; Jean-Marie Bouteiller; Michel Baudry
Journal:  Open Access Bioinformatics       Date:  2010

8.  An n-level field theory of biological neural networks.

Authors:  G A Chauvet
Journal:  J Math Biol       Date:  1993       Impact factor: 2.259

9.  The optimal height of the synaptic cleft.

Authors:  Leonid P Savtchenko; Dmitri A Rusakov
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-29       Impact factor: 11.205

  9 in total
  15 in total

1.  Modeling of the nervous system: from modulation of glutamatergic and gabaergic molecular dynamics to neuron spiking activity.

Authors:  Jean-Marie C Bouteiller; Arnaud Legendre; Sushmita L Allam; Nicolas Ambert; Eric Y Hu; Renaud Greget; Anne F Keller; Fabien Pernot; Serge Bischoff; Michel Baudry; Theodore W Berger
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2012

2.  Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations.

Authors:  Eric Y Hu; Gene Yu; Dong Song; C Jean-Marie Bouteiller; W Theodore Berger
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2018-07

Review 3.  AMPA receptor potentiators: from drug design to cognitive enhancement.

Authors:  Kathryn M Partin
Journal:  Curr Opin Pharmacol       Date:  2014-11-27       Impact factor: 5.547

4.  A comparison between direct and indirect measurements of neurotransmitter vesicle release dynamics: a computational study.

Authors:  Eric Y Hu; Jean-Marie C Bouteiller; Mike Huang; Dong Song; Theodore Berger
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

5.  A multi-scale computational model for the study of retinal prosthetic stimulation.

Authors:  Kyle Loizos; Gianluca Lazzi; J Scott Lauritzen; James Anderson; Bryan W Jones; Robert Marc
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

6.  On the computation of a retina resistivity profile for applications in multi-scale modeling of electrical stimulation and absorption.

Authors:  Kyle Loizos; Anil Kumar RamRakhyani; James Anderson; Robert Marc; Gianluca Lazzi
Journal:  Phys Med Biol       Date:  2016-05-25       Impact factor: 3.609

7.  Has the time come for predictive computer modeling in CNS drug discovery and development?

Authors:  H Geerts; A Spiros; P Roberts; R Carr
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2012-11-28

8.  Synaptic Efficacy as a Function of Ionotropic Receptor Distribution: A Computational Study.

Authors:  Sushmita L Allam; Jean-Marie C Bouteiller; Eric Y Hu; Nicolas Ambert; Renaud Greget; Serge Bischoff; Michel Baudry; Theodore W Berger
Journal:  PLoS One       Date:  2015-10-19       Impact factor: 3.240

9.  A computational model to investigate astrocytic glutamate uptake influence on synaptic transmission and neuronal spiking.

Authors:  Sushmita L Allam; Viviane S Ghaderi; Jean-Marie C Bouteiller; Arnaud Legendre; Nicolas Ambert; Renaud Greget; Serge Bischoff; Michel Baudry; Theodore W Berger
Journal:  Front Comput Neurosci       Date:  2012-10-01       Impact factor: 2.380

10.  Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations.

Authors:  Eric Y Hu; Jean-Marie C Bouteiller; Dong Song; Michel Baudry; Theodore W Berger
Journal:  Front Comput Neurosci       Date:  2015-09-17       Impact factor: 2.380

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