Literature DB >> 18763719

Modeling glutamatergic synapses: insights into mechanisms regulating synaptic efficacy.

Jean-Marie C Bouteiller1, Michel Baudry, Sushmita L Allam, Renaud J Greget, Serge Bischoff, Theodore W Berger.   

Abstract

The hippocampal formation is critically involved for the long-term storage of various forms of information, and it is widely believed that the phenomenon of long-term potentiation (LTP) of synaptic transmission is a molecular/cellular mechanism participating in memory formation. Although several high level models of hippocampal function have been developed, they do not incorporate detailed molecular information of the type necessary to understand the contribution of individual molecular events to the mechanisms underlying LTP and learning and memory. We are therefore developing new technological tools based on mathematical modeling and computer simulation of the molecular processes taking place in realistic biological networks to reach such an understanding. This article briefly summarizes the approach we are using and illustrates it by presenting data regarding the effects of changing the number of AMPA receptors on various features of glutamatergic transmission, including NMDA receptor-mediated responses and paired-pulse facilitation. We conclude by discussing the significance of these results and providing some ideas for future directions with this approach.

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Year:  2008        PMID: 18763719      PMCID: PMC2947192          DOI: 10.1142/s0219635208001770

Source DB:  PubMed          Journal:  J Integr Neurosci        ISSN: 0219-6352            Impact factor:   2.117


  22 in total

1.  Different modes of expression of AMPA and NMDA receptors in hippocampal synapses.

Authors:  Y Takumi; V Ramírez-León; P Laake; E Rinvik; O P Ottersen
Journal:  Nat Neurosci       Date:  1999-07       Impact factor: 24.884

2.  Quantifying the magnitude of changes in synaptic level parameters with long-term potentiation.

Authors:  William R Holmes; Lawrence M Grover
Journal:  J Neurophysiol       Date:  2006-06-07       Impact factor: 2.714

3.  Biophysical model of AMPA receptor trafficking and its regulation during long-term potentiation/long-term depression.

Authors:  Berton A Earnshaw; Paul C Bressloff
Journal:  J Neurosci       Date:  2006-11-22       Impact factor: 6.167

4.  Quantitative ultrastructural analysis of hippocampal excitatory synapses.

Authors:  T Schikorski; C F Stevens
Journal:  J Neurosci       Date:  1997-08-01       Impact factor: 6.167

5.  A dynamic model of the type-2 inositol trisphosphate receptor.

Authors:  James Sneyd; Jean-Francois Dufour
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

Review 6.  Short-term synaptic plasticity.

Authors:  Robert S Zucker; Wade G Regehr
Journal:  Annu Rev Physiol       Date:  2002       Impact factor: 19.318

7.  Long-term potentiation alters the modulator pharmacology of AMPA-type glutamate receptors.

Authors:  Bin Lin; Fernando A Brücher; Laura Lee Colgin; Gary Lynch
Journal:  J Neurophysiol       Date:  2002-06       Impact factor: 2.714

8.  Contribution of NMDA receptor channels to the expression of LTP in the hippocampal dentate gyrus.

Authors:  Zhuo Wang; Dong Song; Theodore W Berger
Journal:  Hippocampus       Date:  2002       Impact factor: 3.899

9.  Postischemic enhancements of N-methyl-D-aspartic acid (NMDA) and non-NMDA receptor-mediated responses in hippocampal CA1 pyramidal neurons.

Authors:  A Mitani; S Namba; K Ikemune; H Yanase; T Arai; K Kataoka
Journal:  J Cereb Blood Flow Metab       Date:  1998-10       Impact factor: 6.200

10.  Molecular switches at the synapse emerge from receptor and kinase traffic.

Authors:  Arnold Hayer; Upinder S Bhalla
Journal:  PLoS Comput Biol       Date:  2005-07-29       Impact factor: 4.475

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  12 in total

1.  Integrated multiscale modeling of the nervous system: predicting changes in hippocampal network activity by a positive AMPA receptor modulator.

Authors:  Jean-Marie C Bouteiller; Sushmita L Allam; Eric Y Hu; Renaud Greget; Nicolas Ambert; Anne Florence Keller; Serge Bischoff; Michel Baudry; Theodore W Berger
Journal:  IEEE Trans Biomed Eng       Date:  2011-06-02       Impact factor: 4.538

2.  libRoadRunner: a high performance SBML simulation and analysis library.

Authors:  Endre T Somogyi; Jean-Marie Bouteiller; James A Glazier; Matthias König; J Kyle Medley; Maciej H Swat; Herbert M Sauro
Journal:  Bioinformatics       Date:  2015-06-17       Impact factor: 6.937

3.  Modeling of the nervous system: from modulation of glutamatergic and gabaergic molecular dynamics to neuron spiking activity.

Authors:  Jean-Marie C Bouteiller; Arnaud Legendre; Sushmita L Allam; Nicolas Ambert; Eric Y Hu; Renaud Greget; Anne F Keller; Fabien Pernot; Serge Bischoff; Michel Baudry; Theodore W Berger
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2012

4.  Computational studies of NMDA receptors: differential effects of neuronal activity on efficacy of competitive and non-competitive antagonists.

Authors:  Nicolas Ambert; Renaud Greget; Olivier Haeberlé; Serge Bischoff; Theodore W Berger; Jean-Marie Bouteiller; Michel Baudry
Journal:  Open Access Bioinformatics       Date:  2010

5.  Nonlinear dynamic modeling of synaptically driven single hippocampal neuron intracellular activity.

Authors:  Ude Lu; Dong Song; Theodore W Berger
Journal:  IEEE Trans Biomed Eng       Date:  2011-01-13       Impact factor: 4.538

6.  Insights on synaptic paired-pulse response using parametric and non-parametric models.

Authors:  Jean-Marie C Bouteiller; Eric Hu; Sushmita L Allam; Viviane Ghaderi; Dong Song; Theodore W Berger
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

7.  Influence of ionotropic receptors localization on glutamatergic synaptic response to paired-pulse stimulation protocol.

Authors:  Jean-Marie C Bouteiller; Sushmita L Allam; Nicolas Ambert; Renaud Greget; Eric Hu; Serge Bischoff; Michel Baudry; Theodore W Berger
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

8.  The influence of synaptic size on AMPA receptor activation: a Monte Carlo model.

Authors:  Jesus Montes; Jose M Peña; Javier DeFelipe; Oscar Herreras; Angel Merchan-Perez
Journal:  PLoS One       Date:  2015-06-24       Impact factor: 3.240

9.  A computational model to investigate astrocytic glutamate uptake influence on synaptic transmission and neuronal spiking.

Authors:  Sushmita L Allam; Viviane S Ghaderi; Jean-Marie C Bouteiller; Arnaud Legendre; Nicolas Ambert; Renaud Greget; Serge Bischoff; Michel Baudry; Theodore W Berger
Journal:  Front Comput Neurosci       Date:  2012-10-01       Impact factor: 2.380

10.  Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations.

Authors:  Eric Y Hu; Jean-Marie C Bouteiller; Dong Song; Michel Baudry; Theodore W Berger
Journal:  Front Comput Neurosci       Date:  2015-09-17       Impact factor: 2.380

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