Literature DB >> 21638686

Tactile teaching: Exploring protein structure/function using physical models*.

Tim Herman1, Jennifer Morris, Shannon Colton, Ann Batiza, Michael Patrick, Margaret Franzen, David S Goodsell.   

Abstract

The technology now exists to construct physical models of proteins based on atomic coordinates of solved structures. We review here our recent experiences in using physical models to teach concepts of protein structure and function at both the high school and the undergraduate levels. At the high school level, physical models are used in a professional development program targeted to biology and chemistry teachers. This program has recently been expanded to include two student enrichment programs in which high school students participate in physical protein modeling activities. At the undergraduate level, we are currently exploring the usefulness of physical models in communicating concepts of protein structure and function that have been traditionally difficult to teach. We discuss our recent experience with two such examples: the close-packed nature of an enzyme active site and the pH-induced conformational change of the influenza hemagglutinin protein during virus infection.
Copyright © 2006 International Union of Biochemistry and Molecular Biology, Inc.

Year:  2006        PMID: 21638686     DOI: 10.1002/bmb.2006.494034042649

Source DB:  PubMed          Journal:  Biochem Mol Biol Educ        ISSN: 1470-8175            Impact factor:   1.160


  17 in total

Review 1.  Visualization software for molecular assemblies.

Authors:  Thomas D Goddard; Thomas E Ferrin
Journal:  Curr Opin Struct Biol       Date:  2007-08-28       Impact factor: 6.809

2.  A combination of hand-held models and computer imaging programs helps students answer oral questions about molecular structure and function: a controlled investigation of student learning.

Authors:  Michelle A Harris; Ronald F Peck; Shannon Colton; Jennifer Morris; Elias Chaibub Neto; Julie Kallio
Journal:  CBE Life Sci Educ       Date:  2009       Impact factor: 3.325

3.  Coarse-grained, foldable, physical model of the polypeptide chain.

Authors:  Promita Chakraborty; Ronald N Zuckermann
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

4.  Tangible assets.

Authors:  Michelle Francl
Journal:  Nat Chem       Date:  2013-03       Impact factor: 24.427

5.  A Self-Assisting Protein Folding Model for Teaching Structural Molecular Biology.

Authors:  Jodi Davenport; Michael Pique; Elizabeth Getzoff; Jon Huntoon; Adam Gardner; Arthur Olson
Journal:  Structure       Date:  2017-04-04       Impact factor: 5.006

Review 6.  Wenxiang 3.0: Evolutionary Visualization of α, π, and 3/10 Helices.

Authors:  John R Jungck; Metehan Cebeci
Journal:  Evol Bioinform Online       Date:  2022-05-31       Impact factor: 2.031

7.  Protein structure in context: the molecular landscape of angiogenesis.

Authors:  Elise A Span; David S Goodsell; Ramani Ramchandran; Margaret A Franzen; Tim Herman; Daniel S Sem
Journal:  Biochem Mol Biol Educ       Date:  2013 Jul-Aug       Impact factor: 1.160

8.  PDB-101: Educational resources supporting molecular explorations through biology and medicine.

Authors:  Christine Zardecki; Shuchismita Dutta; David S Goodsell; Robert Lowe; Maria Voigt; Stephen K Burley
Journal:  Protein Sci       Date:  2021-10-18       Impact factor: 6.725

9.  Crystallographic education in the 21st century.

Authors:  Saulius Gražulis; Amy Alexis Sarjeant; Peter Moeck; Jennifer Stone-Sundberg; Trevor J Snyder; Werner Kaminsky; Allen G Oliver; Charlotte L Stern; Louise N Dawe; Denis A Rychkov; Evgeniy A Losev; Elena V Boldyreva; Joseph M Tanski; Joel Bernstein; Wael M Rabeh; Katherine A Kantardjieff
Journal:  J Appl Crystallogr       Date:  2015-10-13       Impact factor: 3.304

10.  Active learning in the lecture theatre using 3D printed objects.

Authors:  David P Smith
Journal:  F1000Res       Date:  2016-01-13
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