Literature DB >> 28380340

A Self-Assisting Protein Folding Model for Teaching Structural Molecular Biology.

Jodi Davenport1, Michael Pique2, Elizabeth Getzoff2, Jon Huntoon2, Adam Gardner2, Arthur Olson3.   

Abstract

Structural molecular biology is now becoming part of high school science curriculum thus posing a challenge for teachers who need to convey three-dimensional (3D) structures with conventional text and pictures. In many cases even interactive computer graphics does not go far enough to address these challenges. We have developed a flexible model of the polypeptide backbone using 3D printing technology. With this model we have produced a polypeptide assembly kit to create an idealized model of the Triosephosphate isomerase mutase enzyme (TIM), which forms a structure known as TIM barrel. This kit has been used in a laboratory practical where students perform a step-by-step investigation into the nature of protein folding, starting with the handedness of amino acids to the formation of secondary and tertiary structure. Based on the classroom evidence we collected, we conclude that these models are valuable and inexpensive resource for teaching structural molecular biology.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  3D printing; alpha helix; beta sheet; chirality; polypeptide assembly; polypeptide model; protein folding; tangible molecular model; teaching protein structure

Mesh:

Substances:

Year:  2017        PMID: 28380340      PMCID: PMC5490835          DOI: 10.1016/j.str.2017.03.001

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  11 in total

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3.  A three-dimensional model of the myoglobin molecule obtained by x-ray analysis.

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Journal:  Nature       Date:  1958-03-08       Impact factor: 49.962

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Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

5.  Self-assembly gets physical.

Authors:  Arthur J Olson
Journal:  Nat Nanotechnol       Date:  2015-08       Impact factor: 39.213

6.  Tangible interfaces for structural molecular biology.

Authors:  Alexandre Gillet; Michel Sanner; Daniel Stoffler; Arthur Olson
Journal:  Structure       Date:  2005-03       Impact factor: 5.006

7.  Chemical mimicry of viral capsid self-assembly.

Authors:  Arthur J Olson; Yunfeng H E Hu; Ehud Keinan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-18       Impact factor: 11.205

8.  Structure of haemoglobin: a three-dimensional Fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis.

Authors:  M F PERUTZ; M G ROSSMANN; A F CULLIS; H MUIRHEAD; G WILL; A C NORTH
Journal:  Nature       Date:  1960-02-13       Impact factor: 49.962

9.  Coarse-grained, foldable, physical model of the polypeptide chain.

Authors:  Promita Chakraborty; Ronald N Zuckermann
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

10.  The matching of physical models to three-dimensional electron-density maps: a simple optical device.

Authors:  F M Richards
Journal:  J Mol Biol       Date:  1968-10-14       Impact factor: 5.469

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  3 in total

Review 1.  Wenxiang 3.0: Evolutionary Visualization of α, π, and 3/10 Helices.

Authors:  John R Jungck; Metehan Cebeci
Journal:  Evol Bioinform Online       Date:  2022-05-31       Impact factor: 2.031

Review 2.  Perspectives on Structural Molecular Biology Visualization: From Past to Present.

Authors:  Arthur J Olson
Journal:  J Mol Biol       Date:  2018-07-23       Impact factor: 5.469

3.  Assemble-And-Match: A Novel Hybrid Tool for Enhancing Education and Research in Rational Structure Based Drug Design.

Authors:  Pouya Tavousi; Reza Amin; Sina Shahbazmohamadi
Journal:  Sci Rep       Date:  2018-01-16       Impact factor: 4.379

  3 in total

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