Literature DB >> 21632821

Regulation of the Dbp5 ATPase cycle in mRNP remodeling at the nuclear pore: a lively new paradigm for DEAD-box proteins.

Sarah Ledoux1, Christine Guthrie.   

Abstract

It is commonly assumed that all DEAD-box ATPases function via a shared mechanism, since this is the case for the few proteins characterized thus far. Hodge and colleagues (pp. 1052-1064) and Noble and colleagues (pp. 1065-1077) now describe a novel model for Dbp5's ATPase cycle in mRNA (messenger RNA)/protein complex (mRNP) remodeling during nuclear export. Notably, unlike other DEAD-box proteins, Dbp5 uses a conformational change distinct from ATP hydrolysis for its activity and requires an ADP release factor to reset its ATPase cycle.

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Year:  2011        PMID: 21632821      PMCID: PMC3110949          DOI: 10.1101/gad.2062611

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  33 in total

Review 1.  Nuclear export of mRNA.

Authors:  Murray Stewart
Journal:  Trends Biochem Sci       Date:  2010-08-16       Impact factor: 13.807

2.  Structural and functional analysis of the interaction between the nucleoporin Nup214 and the DEAD-box helicase Ddx19.

Authors:  Johanna Napetschnig; Susanne A Kassube; Erik W Debler; Richard W Wong; Günter Blobel; André Hoelz
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-10       Impact factor: 11.205

Review 3.  The mechanism of ATP-dependent RNA unwinding by DEAD box proteins.

Authors:  Manuel Hilbert; Anne R Karow; Dagmar Klostermeier
Journal:  Biol Chem       Date:  2009-12       Impact factor: 3.915

4.  Structure of the C-terminus of the mRNA export factor Dbp5 reveals the interaction surface for the ATPase activator Gle1.

Authors:  Zain Y Dossani; Christine S Weirich; Jan P Erzberger; James M Berger; Karsten Weis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-02       Impact factor: 11.205

5.  The Dbp5 cycle at the nuclear pore complex during mRNA export I: dbp5 mutants with defects in RNA binding and ATP hydrolysis define key steps for Nup159 and Gle1.

Authors:  Christine A Hodge; Elizabeth J Tran; Kristen N Noble; Abel R Alcazar-Roman; Rakefet Ben-Yishay; John J Scarcelli; Andrew W Folkmann; Yaron Shav-Tal; Susan R Wente; Charles N Cole
Journal:  Genes Dev       Date:  2011-05-15       Impact factor: 11.361

6.  The Dbp5 cycle at the nuclear pore complex during mRNA export II: nucleotide cycling and mRNP remodeling by Dbp5 are controlled by Nup159 and Gle1.

Authors:  Kristen N Noble; Elizabeth J Tran; Abel R Alcázar-Román; Christine A Hodge; Charles N Cole; Susan R Wente
Journal:  Genes Dev       Date:  2011-05-15       Impact factor: 11.361

7.  Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA.

Authors:  Mark Del Campo; Alan M Lambowitz
Journal:  Mol Cell       Date:  2009-09-11       Impact factor: 17.970

8.  A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export.

Authors:  Ben Montpetit; Nathan D Thomsen; Kara J Helmke; Markus A Seeliger; James M Berger; Karsten Weis
Journal:  Nature       Date:  2011-03-27       Impact factor: 49.962

9.  The DEXD/H-box RNA helicase DDX19 is regulated by an {alpha}-helical switch.

Authors:  Ruairi Collins; Tobias Karlberg; Lari Lehtiö; Patrick Schütz; Susanne van den Berg; Lars-Göran Dahlgren; Martin Hammarström; Johan Weigelt; Herwig Schüler
Journal:  J Biol Chem       Date:  2009-02-25       Impact factor: 5.157

10.  Phosphate release contributes to the rate-limiting step for unwinding by an RNA helicase.

Authors:  Qixin Wang; Jamie J Arnold; Akira Uchida; Kevin D Raney; Craig E Cameron
Journal:  Nucleic Acids Res       Date:  2009-12-06       Impact factor: 16.971

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  13 in total

Review 1.  Dbp5, Gle1-IP6 and Nup159: a working model for mRNP export.

Authors:  Andrew W Folkmann; Kristen N Noble; Charles N Cole; Susan R Wente
Journal:  Nucleus       Date:  2011-11-01       Impact factor: 4.197

2.  Nuclear export of single native mRNA molecules observed by light sheet fluorescence microscopy.

Authors:  Jan Peter Siebrasse; Tim Kaminski; Ulrich Kubitscheck
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

Review 3.  To the pore and through the pore: a story of mRNA export kinetics.

Authors:  Marlene Oeffinger; Daniel Zenklusen
Journal:  Biochim Biophys Acta       Date:  2012-02-22

4.  Nup159 Weakens Gle1 Binding to Dbp5 But Does Not Accelerate ADP Release.

Authors:  Emily V Wong; Shawn Gray; Wenxiang Cao; Rachel Montpetit; Ben Montpetit; Enrique M De La Cruz
Journal:  J Mol Biol       Date:  2018-05-19       Impact factor: 5.469

5.  Synergistic effects of ATP and RNA binding to human DEAD-box protein DDX1.

Authors:  Julian N Kellner; Jochen Reinstein; Anton Meinhart
Journal:  Nucleic Acids Res       Date:  2015-02-17       Impact factor: 16.971

Review 6.  Temporal and spatial regulation of mRNA export: Single particle RNA-imaging provides new tools and insights.

Authors:  Stephanie Heinrich; Carina Patrizia Derrer; Azra Lari; Karsten Weis; Ben Montpetit
Journal:  Bioessays       Date:  2017-01-04       Impact factor: 4.345

7.  A single molecule view on Dbp5 and mRNA at the nuclear pore.

Authors:  Tim Kaminski; Jan Peter Siebrasse; Ulrich Kubitscheck
Journal:  Nucleus       Date:  2013-01-01       Impact factor: 4.197

8.  Inositol Hexakisphosphate Kinase 2 Promotes Cell Death in Cells with Cytoplasmic TDP-43 Aggregation.

Authors:  Eiichiro Nagata; Takashi Nonaka; Yusuke Moriya; Natsuko Fujii; Yoshinori Okada; Hideo Tsukamoto; Johbu Itoh; Chisa Okada; Tadayuki Satoh; Tetsuaki Arai; Masato Hasegawa; Shunya Takizawa
Journal:  Mol Neurobiol       Date:  2015-10-06       Impact factor: 5.590

9.  Replication and trafficking of a plant virus are coupled at the entrances of plasmodesmata.

Authors:  Jens Tilsner; Olga Linnik; Marion Louveaux; Ian M Roberts; Sean N Chapman; Karl J Oparka
Journal:  J Cell Biol       Date:  2013-06-24       Impact factor: 10.539

Review 10.  Toward a molecular understanding of RNA remodeling by DEAD-box proteins.

Authors:  Rick Russell; Inga Jarmoskaite; Alan M Lambowitz
Journal:  RNA Biol       Date:  2012-09-20       Impact factor: 4.652

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