Literature DB >> 21576265

The Dbp5 cycle at the nuclear pore complex during mRNA export I: dbp5 mutants with defects in RNA binding and ATP hydrolysis define key steps for Nup159 and Gle1.

Christine A Hodge1, Elizabeth J Tran, Kristen N Noble, Abel R Alcazar-Roman, Rakefet Ben-Yishay, John J Scarcelli, Andrew W Folkmann, Yaron Shav-Tal, Susan R Wente, Charles N Cole.   

Abstract

Nuclear export of messenger RNA (mRNA) occurs by translocation of mRNA/protein complexes (mRNPs) through nuclear pore complexes (NPCs). The DEAD-box protein Dbp5 mediates export by triggering removal of mRNP proteins in a spatially controlled manner. This requires Dbp5 interaction with Nup159 in NPC cytoplasmic filaments and activation of Dbp5's ATPase activity by Gle1 bound to inositol hexakisphosphate (IP(6)). However, the precise sequence of events within this mechanism has not been fully defined. Here we analyze dbp5 mutants that alter ATP binding, ATP hydrolysis, or RNA binding. We found that ATP binding and hydrolysis are required for efficient Dbp5 association with NPCs. Interestingly, mutants defective for RNA binding are dominant-negative (DN) for mRNA export in yeast and human cells. We show that the DN phenotype stems from competition with wild-type Dbp5 for Gle1 at NPCs. The Dbp5-Gle1 interaction is limiting for export and, importantly, can be independent of Nup159. Fluorescence recovery after photobleaching experiments in yeast show a very dynamic association between Dbp5 and NPCs, averaging <1 sec, similar to reported NPC translocation rates for mRNPs. This work reveals critical steps in the Gle1-IP(6)/Dbp5/Nup159 cycle, and suggests that the number of remodeling events mediated by a single Dbp5 is limited.

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Year:  2011        PMID: 21576265      PMCID: PMC3093121          DOI: 10.1101/gad.2041611

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  60 in total

1.  The N-terminal domain of Nup159 forms a beta-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore.

Authors:  Christine S Weirich; Jan P Erzberger; James M Berger; Karsten Weis
Journal:  Mol Cell       Date:  2004-12-03       Impact factor: 17.970

2.  Physical and genetic interactions link the yeast protein Zds1p with mRNA nuclear export.

Authors:  Francisco Estruch; Christine A Hodge; Susana Rodríguez-Navarro; Charles N Cole
Journal:  J Biol Chem       Date:  2004-12-24       Impact factor: 5.157

3.  A phospholipase C-dependent inositol polyphosphate kinase pathway required for efficient messenger RNA export.

Authors:  J D York; A R Odom; R Murphy; E B Ives; S R Wente
Journal:  Science       Date:  1999-07-02       Impact factor: 47.728

4.  Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores.

Authors:  A Segref; K Sharma; V Doye; A Hellwig; J Huber; R Lührmann; E Hurt
Journal:  EMBO J       Date:  1997-06-02       Impact factor: 11.598

5.  Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p.

Authors:  C Schmitt; C von Kobbe; A Bachi; N Panté; J P Rodrigues; C Boscheron; G Rigaut; M Wilm; B Séraphin; M Carmo-Fonseca; E Izaurralde
Journal:  EMBO J       Date:  1999-08-02       Impact factor: 11.598

6.  Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells.

Authors:  C A Hodge; H V Colot; P Stafford; C N Cole
Journal:  EMBO J       Date:  1999-10-15       Impact factor: 11.598

7.  An RNA-export mediator with an essential nuclear export signal.

Authors:  R Murphy; S R Wente
Journal:  Nature       Date:  1996-09-26       Impact factor: 49.962

8.  Insertional mutation of the Drosophila nuclear lamin Dm0 gene results in defective nuclear envelopes, clustering of nuclear pore complexes, and accumulation of annulate lamellae.

Authors:  B Lenz-Böhme; J Wismar; S Fuchs; R Reifegerste; E Buchner; H Betz; B Schmitt
Journal:  J Cell Biol       Date:  1997-06-02       Impact factor: 10.539

9.  In vivo dynamics of nuclear pore complexes in yeast.

Authors:  M Bucci; S R Wente
Journal:  J Cell Biol       Date:  1997-03-24       Impact factor: 10.539

10.  Dynamics of nuclear pore distribution in nucleoporin mutant yeast cells.

Authors:  N Belgareh; V Doye
Journal:  J Cell Biol       Date:  1997-02-24       Impact factor: 10.539

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  57 in total

Review 1.  Dbp5, Gle1-IP6 and Nup159: a working model for mRNP export.

Authors:  Andrew W Folkmann; Kristen N Noble; Charles N Cole; Susan R Wente
Journal:  Nucleus       Date:  2011-11-01       Impact factor: 4.197

2.  Nuclear export of single native mRNA molecules observed by light sheet fluorescence microscopy.

Authors:  Jan Peter Siebrasse; Tim Kaminski; Ulrich Kubitscheck
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

3.  Regulation of the Dbp5 ATPase cycle in mRNP remodeling at the nuclear pore: a lively new paradigm for DEAD-box proteins.

Authors:  Sarah Ledoux; Christine Guthrie
Journal:  Genes Dev       Date:  2011-06-01       Impact factor: 11.361

Review 4.  From unwinding to clamping - the DEAD box RNA helicase family.

Authors:  Patrick Linder; Eckhard Jankowsky
Journal:  Nat Rev Mol Cell Biol       Date:  2011-07-22       Impact factor: 94.444

Review 5.  Control of mammalian gene expression by selective mRNA export.

Authors:  Vihandha O Wickramasinghe; Ronald A Laskey
Journal:  Nat Rev Mol Cell Biol       Date:  2015-06-17       Impact factor: 94.444

6.  Nup42 and IP6 coordinate Gle1 stimulation of Dbp5/DDX19B for mRNA export in yeast and human cells.

Authors:  Rebecca L Adams; Aaron C Mason; Laura Glass; Susan R Wente
Journal:  Traffic       Date:  2017-10-16       Impact factor: 6.215

7.  A single molecule view on Dbp5 and mRNA at the nuclear pore.

Authors:  Tim Kaminski; Jan Peter Siebrasse; Ulrich Kubitscheck
Journal:  Nucleus       Date:  2013-01-01       Impact factor: 4.197

Review 8.  Postage for the messenger: designating routes for nuclear mRNA export.

Authors:  Barbara J Natalizio; Susan R Wente
Journal:  Trends Cell Biol       Date:  2013-04-11       Impact factor: 20.808

9.  Nucleoporin FG domains facilitate mRNP remodeling at the cytoplasmic face of the nuclear pore complex.

Authors:  Rebecca L Adams; Laura J Terry; Susan R Wente
Journal:  Genetics       Date:  2014-06-14       Impact factor: 4.562

10.  The oncogene eIF4E reprograms the nuclear pore complex to promote mRNA export and oncogenic transformation.

Authors:  Biljana Culjkovic-Kraljacic; Aurélie Baguet; Laurent Volpon; Abdellatif Amri; Katherine L B Borden
Journal:  Cell Rep       Date:  2012-08-16       Impact factor: 9.423

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