Literature DB >> 21616185

Diversity of operation in ATP-dependent chromatin remodelers.

Swetansu K Hota1, Blaine Bartholomew.   

Abstract

Chromatin is actively restructured by a group of proteins that belong to the family of ATP-dependent DNA translocases. These chromatin remodelers can assemble, relocate or remove nucleosomes, the fundamental building blocks of chromatin. The family of ATP-dependent chromatin remodelers has many properties in common, but there are also important differences that may account for their varying roles in the cell. Some of the important characteristics of these complexes have begun to be revealed such as their interactions with chromatin and their mechanism of operation. The different domains of chromatin remodelers are discussed in terms of their targets and functional roles in mobilizing nucleosomes. The techniques that have driven these findings are discussed and how these have helped develop the current models for how nucleosomes are remodeled. This article is part of a Special Issue entitled: Snf2/Swi2 ATPase structure and function. 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21616185      PMCID: PMC3171594          DOI: 10.1016/j.bbagrm.2011.05.007

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  73 in total

1.  Critical role for the histone H4 N terminus in nucleosome remodeling by ISWI.

Authors:  C R Clapier; G Längst; D F Corona; P B Becker; K P Nightingale
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

2.  A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI.

Authors:  Cedric R Clapier; Karl P Nightingale; Peter B Becker
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

3.  Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

Authors:  Maria L Kireeva; Wendy Walter; Vladimir Tchernajenko; Vladimir Bondarenko; Mikhail Kashlev; Vasily M Studitsky
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

4.  SWI/SNF unwraps, slides, and rewraps the nucleosome.

Authors:  Stefan R Kassabov; Bei Zhang; Jim Persinger; Blaine Bartholomew
Journal:  Mol Cell       Date:  2003-02       Impact factor: 17.970

5.  Dynamics of ATP-dependent chromatin assembly by ACF.

Authors:  Dmitry V Fyodorov; James T Kadonaga
Journal:  Nature       Date:  2002-08-22       Impact factor: 49.962

6.  Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI.

Authors:  Tim Grüne; Jan Brzeski; Anton Eberharter; Cedric R Clapier; Davide F V Corona; Peter B Becker; Christoph W Müller
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

7.  Modulation of ISWI function by site-specific histone acetylation.

Authors:  Davide F V Corona; Cedric R Clapier; Peter B Becker; John W Tamkun
Journal:  EMBO Rep       Date:  2002-03       Impact factor: 8.807

8.  High-resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2.

Authors:  Stefan R Kassabov; Nathalia M Henry; Martin Zofall; Toshio Tsukiyama; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2002-11       Impact factor: 4.272

9.  NoRC--a novel member of mammalian ISWI-containing chromatin remodeling machines.

Authors:  R Strohner; A Nemeth; P Jansa; U Hofmann-Rohrer; R Santoro; G Längst; I Grummt
Journal:  EMBO J       Date:  2001-09-03       Impact factor: 11.598

10.  Nucleosomes unfold completely at a transcriptionally active promoter.

Authors:  Hinrich Boeger; Joachim Griesenbeck; J Seth Strattan; Roger D Kornberg
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

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  35 in total

1.  Genome-wide nucleosome specificity and directionality of chromatin remodelers.

Authors:  Kuangyu Yen; Vinesh Vinayachandran; Kiran Batta; R Thomas Koerber; B Franklin Pugh
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

2.  The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter-proximal nucleosomes.

Authors:  Boseon Byeon; Wei Wang; Artem Barski; Ryan T Ranallo; Kan Bao; Dustin E Schones; Keji Zhao; Carl Wu; Wei-Hua Wu
Journal:  J Biol Chem       Date:  2013-06-18       Impact factor: 5.157

3.  Nucleosome sliding by Chd1 does not require rigid coupling between DNA-binding and ATPase domains.

Authors:  Ilana M Nodelman; Gregory D Bowman
Journal:  EMBO Rep       Date:  2013-10-15       Impact factor: 8.807

4.  A highly conserved region within H2B is important for FACT to act on nucleosomes.

Authors:  Suting Zheng; J Brooks Crickard; Abhinaya Srikanth; Joseph C Reese
Journal:  Mol Cell Biol       Date:  2013-11-18       Impact factor: 4.272

5.  The SnAC domain of SWI/SNF is a histone anchor required for remodeling.

Authors:  Payel Sen; Paula Vivas; Mekonnen Lemma Dechassa; Alex M Mooney; Michael G Poirier; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2012-11-12       Impact factor: 4.272

6.  The ATPase domain of ISWI is an autonomous nucleosome remodeling machine.

Authors:  Felix Mueller-Planitz; Henrike Klinker; Johanna Ludwigsen; Peter B Becker
Journal:  Nat Struct Mol Biol       Date:  2012-12-02       Impact factor: 15.369

7.  The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance.

Authors:  Songguang Yang; Chenlong Li; Linmao Zhao; Sujuan Gao; Jingxia Lu; Minglei Zhao; Chia-Yang Chen; Xuncheng Liu; Ming Luo; Yuhai Cui; Chengwei Yang; Keqiang Wu
Journal:  Plant Cell       Date:  2015-05-19       Impact factor: 11.277

8.  Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP-DNA dissociation.

Authors:  Gregor Heiss; Evelyn Ploetz; Lena Voith von Voithenberg; Ramya Viswanathan; Samson Glaser; Peter Schluesche; Sushi Madhira; Michael Meisterernst; David T Auble; Don C Lamb
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

9.  Inactivation of yeast Isw2 chromatin remodeling enzyme mimics longevity effect of calorie restriction via induction of genotoxic stress response.

Authors:  Weiwei Dang; George L Sutphin; Jean A Dorsey; Gabriel L Otte; Kajia Cao; Rocco M Perry; Jennifer J Wanat; Dimitra Saviolaki; Christopher J Murakami; Scott Tsuchiyama; Brett Robison; Brian D Gregory; Michiel Vermeulen; Ramin Shiekhattar; F Brad Johnson; Brian K Kennedy; Matt Kaeberlein; Shelley L Berger
Journal:  Cell Metab       Date:  2014-05-08       Impact factor: 27.287

10.  Combined gene dosage requirement for SWI/SNF catalytic subunits during early mammalian development.

Authors:  Stephanie L Smith-Roe; Scott J Bultman
Journal:  Mamm Genome       Date:  2012-10-18       Impact factor: 2.957

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