Literature DB >> 12192415

Dynamics of ATP-dependent chromatin assembly by ACF.

Dmitry V Fyodorov1, James T Kadonaga.   

Abstract

The assembly of DNA into chromatin is a critical step in the replication and repair of the eukaryotic genome. It has been known for nearly 20 years that chromatin assembly is an ATP-dependent process. ATP-dependent chromatin-assembly factor (ACF) uses the energy of ATP hydrolysis for the deposition of histones into periodic nucleosome arrays, and the ISWI subunit of ACF is an ATPase that is related to helicases. Here we show that ACF becomes committed to the DNA template upon initiation of chromatin assembly. We also observed that ACF assembles nucleosomes in localized arrays, rather than randomly distributing them. By using a purified ACF-dependent system for chromatin assembly, we found that ACF hydrolyses about 2#150;4 molecules of ATP per base pair in the assembly of nucleosomes. This level of ATP hydrolysis is similar to that used by DNA helicases for the unwinding of DNA. These results suggest that a tracking mechanism exists in which ACF assembles chromatin as an ATP-driven DNA-translocating motor. Moreover, this proposed mechanism for ACF may be relevant to the function of other chromatin-remodelling factors that contain ISWI subunits.

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Year:  2002        PMID: 12192415     DOI: 10.1038/nature00929

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  43 in total

1.  Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme.

Authors:  Iestyn Whitehouse; Chris Stockdale; Andrew Flaus; Mark D Szczelkun; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

2.  Dynamic properties of nucleosomes during thermal and ATP-driven mobilization.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

3.  Reaction cycle of the yeast Isw2 chromatin remodeling complex.

Authors:  Daniel J Fitzgerald; Carl DeLuca; Imre Berger; Hélène Gaillard; Raphael Sigrist; Kyoko Schimmele; Timothy J Richmond
Journal:  EMBO J       Date:  2004-09-09       Impact factor: 11.598

4.  The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo.

Authors:  Kai-Ti Lin; Ruei-Min Lu; Woan-Yuh Tarn
Journal:  Mol Cell Biol       Date:  2004-10       Impact factor: 4.272

5.  ACF1 improves the effectiveness of nucleosome mobilization by ISWI through PHD-histone contacts.

Authors:  Anton Eberharter; Irene Vetter; Roger Ferreira; Peter B Becker
Journal:  EMBO J       Date:  2004-09-30       Impact factor: 11.598

Review 6.  Epigenetic landscape of pluripotent stem cells.

Authors:  Ji Woong Han; Young-sup Yoon
Journal:  Antioxid Redox Signal       Date:  2012-01-11       Impact factor: 8.401

Review 7.  Mechanisms of ATP dependent chromatin remodeling.

Authors:  Vamsi K Gangaraju; Blaine Bartholomew
Journal:  Mutat Res       Date:  2007-01-21       Impact factor: 2.433

Review 8.  Chromatin disassembly and reassembly during DNA repair.

Authors:  Jeffrey G Linger; Jessica K Tyler
Journal:  Mutat Res       Date:  2007-01-21       Impact factor: 2.433

9.  Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites.

Authors:  Fabian Erdel; Thomas Schubert; Caroline Marth; Gernot Längst; Karsten Rippe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

Review 10.  Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Authors:  Cedric R Clapier; Janet Iwasa; Bradley R Cairns; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-17       Impact factor: 94.444

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