Literature DB >> 12620227

SWI/SNF unwraps, slides, and rewraps the nucleosome.

Stefan R Kassabov1, Bei Zhang, Jim Persinger, Blaine Bartholomew.   

Abstract

The structure of the SWI/SNF-remodeled nucleosome was characterized with single base-pair resolution by mapping the contacts of specific histone fold residues with nucleosomal DNA. We demonstrate that SWI/SNF peels up to 50 bp of DNA from the edge of the nucleosome, translocates the histone octamer beyond the DNA ends via a DNA bulge propagation mechanism, and promotes the formation of an intramolecular DNA loop between the nucleosomal entry and exit sites. This stable altered nucleosome conformation also exhibits alterations in the distance between contacts of specific histone residues with DNA and higher electrophoretic and sedimentation mobility, consistent with a more compact molecular shape. SWI/SNF converts a nucleosome to the altered state in less than 1 s, hydrolyzing fewer than 10 ATPs per event.

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Year:  2003        PMID: 12620227     DOI: 10.1016/s1097-2765(03)00039-x

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  95 in total

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4.  Molecular recognition of the nucleosomal "supergroove".

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-20       Impact factor: 11.205

5.  Local geometry and elasticity in compact chromatin structure.

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Journal:  Biophys J       Date:  2010-12-15       Impact factor: 4.033

Review 6.  Allelic exclusion of immunoglobulin genes: models and mechanisms.

Authors:  Christian Vettermann; Mark S Schlissel
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7.  Genome-wide nucleosome specificity and directionality of chromatin remodelers.

Authors:  Kuangyu Yen; Vinesh Vinayachandran; Kiran Batta; R Thomas Koerber; B Franklin Pugh
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Review 8.  Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Authors:  Cedric R Clapier; Janet Iwasa; Bradley R Cairns; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-17       Impact factor: 94.444

9.  High-level activation of transcription of the yeast U6 snRNA gene in chromatin by the basal RNA polymerase III transcription factor TFIIIC.

Authors:  Sushma Shivaswamy; George A Kassavetis; Purnima Bhargava
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

10.  Human SWI/SNF drives sequence-directed repositioning of nucleosomes on C-myc promoter DNA minicircles.

Authors:  Hillel I Sims; Jacqueline M Lane; Natalia P Ulyanova; Gavin R Schnitzler
Journal:  Biochemistry       Date:  2007-09-18       Impact factor: 3.162

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