Literature DB >> 21612196

Puzzle of protein dynamical transition.

Salvatore Magazù1, Federica Migliardo, Antonio Benedetto.   

Abstract

Despite recent extensive efforts, the nature of the dynamics of biological macromolecules still remains unclear. In particular, contradicting models have been proposed for explaining the temperature behavior of the mean square displacement, MSD, and of the system relaxation time, τ. To solve this puzzle, different neutron scattering experiments with different instrumental energy resolutions were performed on dry and hydrated lysozyme. The obtained results show that the so called dynamical transition: (i) is a finite instrumental energy resolution effect, and more specifically, it appears when the characteristic system relaxation time intersects the resolution time, (ii) it does not imply any transition in the dynamical properties of the systems, (iii) it is not due to the fragile-to-strong dynamical crossover (FSC) in the temperature behavior of the system relaxation time, differently to what S. H. Chen et al. proposed [Proc. Natl. Acad. Sci. U.S.A.2006, 103, 9012]. Furthermore, the obtained results confirm the change in the τ-temperature dependence at T = 220 K of S. H. Chen et al., and show that it is not due to finite instrumental energy resolution effects and it is not connected to numerical errors in the data analysis protocol, differently to what W. Doster et al. proposed [Phys. Rev. Lett.2010, 104, 098101].

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Year:  2011        PMID: 21612196     DOI: 10.1021/jp111421m

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  17 in total

1.  Fast Motions of Key Methyl Groups in Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Matthew A Clark; Isaac B Falconer; Gina L Hoatson; Wei Qiang
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

2.  Dynamics of protein and its hydration water: neutron scattering studies on fully deuterated GFP.

Authors:  Jonathan D Nickels; Hugh O'Neill; Liang Hong; Madhusudan Tyagi; Georg Ehlers; Kevin L Weiss; Qiu Zhang; Zheng Yi; Eugene Mamontov; Jeremy C Smith; Alexei P Sokolov
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

3.  From protein and its hydration water dynamics to controlling mechano-elasticity of cellular lipid membranes and cell migration via ionic liquids.

Authors:  Antonio Benedetto
Journal:  Biophys Rev       Date:  2020-09-17

4.  From just physics to biophysics of biological systems.

Authors:  Antonio Benedetto
Journal:  Biophys Rev       Date:  2020-09-10

5.  Bio-protective effects of homologous disaccharides on biological macromolecules.

Authors:  S Magazù; F Migliardo; A Benedetto; R La Torre; L Hennet
Journal:  Eur Biophys J       Date:  2011-10-30       Impact factor: 1.733

6.  Solvent-Driven Dynamical Crossover in the Phenylalanine Side-Chain from the Hydrophobic Core of Amyloid Fibrils Detected by 2H NMR Relaxation.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Gina L Hoatson; Wei Qiang; Isaac B Falconer
Journal:  J Phys Chem B       Date:  2017-07-21       Impact factor: 2.991

7.  Solvent-Slaved Dynamic Processes Observed by Tryptophan Phosphorescence of Human Serum Albumin.

Authors:  Andrew R Draganski; Joel M Friedman; Richard D Ludescher
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

8.  Localized hydration in lyophilized myoglobin by hydrogen-deuterium exchange mass spectrometry. 1. Exchange mapping.

Authors:  Andreas M Sophocleous; Jun Zhang; Elizabeth M Topp
Journal:  Mol Pharm       Date:  2012-02-29       Impact factor: 4.939

9.  Dynamics of Hydrophobic Core Phenylalanine Residues Probed by Solid-State Deuteron NMR.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Toni Villafranca; Janelle Sharp; Wei Xu; Andrew S Lipton; Gina L Hoatson; Robert L Vold
Journal:  J Phys Chem B       Date:  2015-11-12       Impact factor: 2.991

10.  Thermal fluctuations of haemoglobin from different species: adaptation to temperature via conformational dynamics.

Authors:  A M Stadler; C J Garvey; A Bocahut; S Sacquin-Mora; I Digel; G J Schneider; F Natali; G M Artmann; G Zaccai
Journal:  J R Soc Interface       Date:  2012-06-13       Impact factor: 4.118

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