Literature DB >> 2160068

Ordering of cosmid clones covering the herpes simplex virus type I (HSV-I) genome: a test case for fingerprinting by hybridisation.

A G Craig1, D Nizetic, J D Hoheisel, G Zehetner, H Lehrach.   

Abstract

To allow the efficient construction of ordered clone libraries, we have been investigating the use of 'oligonucleotide fingerprinting' as an approach to identify overlapping clones, and ultimately restore the linear order of the clone set. To test the effectiveness of the procedure, we have constructed a cosmid library from the genome of the human DNA virus HSV-I and used hybridisation to multiple oligonucleotides selected from the nucleotide sequence to reconstruct the order of clones and oligonucleotides on the genome.

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Year:  1990        PMID： 2160068      PMCID： PMC330749          DOI： 10.1093/nar/18.9.2653

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  18 in total

1.  Toward a physical map of the genome of the nematode Caenorhabditis elegans.

Authors:  A Coulson; J Sulston; S Brenner; J Karn
Journal:  Proc Natl Acad Sci U S A       Date:  1986-10       Impact factor: 11.205

2.  A partial denaturation map of herpes simplex virus type 1 DNA: evidence for inversions of the unique DNA regions.

Authors:  H Delius; J B Clements
Journal:  J Gen Virol       Date:  1976-10       Impact factor: 3.891

3.  Control of partial digestion combining the enzymes dam methylase and MboI.

Authors:  J D Hoheisel; D Nizetic; H Lehrach
Journal:  Nucleic Acids Res       Date:  1989-12-11       Impact factor: 16.971

4.  A common language for physical mapping of the human genome.

Authors:  M Olson; L Hood; C Cantor; D Botstein
Journal:  Science       Date:  1989-09-29       Impact factor: 47.728

5.  Multiplex DNA sequencing.

Authors:  G M Church; S Kieffer-Higgins
Journal:  Science       Date:  1988-04-08       Impact factor: 47.728

6.  Sequencing of megabase plus DNA by hybridization: theory of the method.

Authors:  R Drmanac; I Labat; I Brukner; R Crkvenjakov
Journal:  Genomics       Date:  1989-02       Impact factor: 5.736

7.  Molecular approaches to genome analysis: a strategy for the construction of ordered overlapping clone libraries.

Authors:  F Michiels; A G Craig; G Zehetner; G P Smith; H Lehrach
Journal:  Comput Appl Biosci       Date:  1987-09

8.  Random-clone strategy for genomic restriction mapping in yeast.

Authors:  M V Olson; J E Dutchik; M Y Graham; G M Brodeur; C Helms; M Frank; M MacCollin; R Scheinman; T Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1986-10       Impact factor: 11.205

9.  Base composition-independent hybridization in tetramethylammonium chloride: a method for oligonucleotide screening of highly complex gene libraries.

Authors:  W I Wood; J Gitschier; L A Lasky; R M Lawn
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

10.  A large inverted duplication allows homologous recombination between chromosomes heterozygous for the proximal t complex inversion.

Authors:  B G Herrmann; D P Barlow; H Lehrach
Journal:  Cell       Date:  1987-03-13       Impact factor: 41.582
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  18 in total

1.  An oligonucleotide fingerprint normalized and expressed sequence tag characterized zebrafish cDNA library.

Authors:  M D Clark; S Hennig; R Herwig; S W Clifton; M A Marra; H Lehrach; S L Johnson
Journal:  Genome Res       Date:  2001-09       Impact factor: 9.043

2.  The use of simulated annealing in chromosome reconstruction experiments based on binary scoring.

Authors:  A J Cuticchia; J Arnold; W E Timberlake
Journal:  Genetics       Date:  1992-10       Impact factor: 4.562

3.  Hybridization fingerprinting of high-density cDNA-library arrays with cDNA pools derived from whole tissues.

Authors:  T M Gress; J D Hoheisel; G G Lennon; G Zehetner; H Lehrach
Journal:  Mamm Genome       Date:  1992       Impact factor: 2.957

4.  Construction, arraying, and high-density screening of large insert libraries of human chromosomes X and 21: their potential use as reference libraries.

Authors:  D Nizetić; G Zehetner; A P Monaco; L Gellen; B D Young; H Lehrach
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-15       Impact factor: 11.205

5.  An improved bacterial colony lysis procedure enables direct DNA hybridisation using short (10, 11 bases) oligonucleotides to cosmids.

Authors:  D Nizetic; R Drmanac; H Lehrach
Journal:  Nucleic Acids Res       Date:  1991-01-11       Impact factor: 16.971

6.  Theoretical analysis of a physical mapping strategy using random single-copy landmarks.

Authors:  E Barillot; J Dausset; D Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-01       Impact factor: 11.205

7.  Optimized strategies for sequence-tagged-site selection in genome mapping.

Authors:  M J Palazzolo; S A Sawyer; C H Martin; D A Smoller; D L Hartl
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-15       Impact factor: 11.205

8.  Automated high resolution optical mapping using arrayed, fluid-fixed DNA molecules.

Authors:  J Jing; J Reed; J Huang; X Hu; V Clarke; J Edington; D Housman; T S Anantharaman; E J Huff; B Mishra; B Porter; A Shenker; E Wolfson; C Hiort; R Kantor; C Aston; D C Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

9.  On the consistency of a physical mapping method to reconstruct a chromosome in vitro.

Authors:  M Xiong; H J Chen; R A Prade; Y Wang; J Griffith; W E Timberlake; J Arnold
Journal:  Genetics       Date:  1996-01       Impact factor: 4.562

10.  Algorithms and software tools for ordering clone libraries: application to the mapping of the genome of Schizosaccharomyces pombe.

Authors:  R Mott; A Grigoriev; E Maier; J Hoheisel; H Lehrach
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971
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