Literature DB >> 16593771

Toward a physical map of the genome of the nematode Caenorhabditis elegans.

A Coulson1, J Sulston, S Brenner, J Karn.   

Abstract

A technique for digital characterization and comparison of DNA fragments, using restriction enzymes, is described. The technique is being applied to fragments from the nematode Caenorhabditis elegans (i) to facilitate cross-indexing of clones emanating from different laboratories and (ii) to construct a physical map of the genome. Eight hundred sixty clusters of clones, from 35 to 350 kilobases long and totaling about 60% of the genome, have been characterized.

Entities:  

Year:  1986        PMID: 16593771      PMCID: PMC386814          DOI: 10.1073/pnas.83.20.7821

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  A cosmid vector that facilitates restriction enzyme mapping.

Authors:  P F Little; S H Cross
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

2.  Random-clone strategy for genomic restriction mapping in yeast.

Authors:  M V Olson; J E Dutchik; M Y Graham; G M Brodeur; C Helms; M Frank; M MacCollin; R Scheinman; T Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1986-10       Impact factor: 11.205

3.  The rDNA of C. elegans: sequence and structure.

Authors:  R E Ellis; J E Sulston; A R Coulson
Journal:  Nucleic Acids Res       Date:  1986-03-11       Impact factor: 16.971

4.  A new selective phage cloning vector, lambda 2001, with sites for XbaI, BamHI, HindIII, EcoRI, SstI and XhoI.

Authors:  J Karn; H W Matthes; M J Gait; S Brenner
Journal:  Gene       Date:  1984-12       Impact factor: 3.688

5.  Rapid and efficient cosmid cloning.

Authors:  D Ish-Horowicz; J F Burke
Journal:  Nucleic Acids Res       Date:  1981-07-10       Impact factor: 16.971

6.  Cloning of a yolk protein gene family from Caenorhabditis elegans.

Authors:  T Blumenthal; M Squire; S Kirtland; J Cane; M Donegan; J Spieth; W Sharrock
Journal:  J Mol Biol       Date:  1984-03-25       Impact factor: 5.469

7.  EcoK restriction during in vitro packaging of coliphage lambda DNA.

Authors:  S M Rosenberg
Journal:  Gene       Date:  1985       Impact factor: 3.688

8.  Genetic mapping of Caenorhabditis elegans collagen genes using DNA polymorphisms as phenotypic markers.

Authors:  G N Cox; S Carr; J M Kramer; D Hirsh
Journal:  Genetics       Date:  1985-03       Impact factor: 4.562

9.  Isolation and characterization of a sperm-specific gene family in the nematode Caenorhabditis elegans.

Authors:  M R Klass; S Kinsley; L C Lopez
Journal:  Mol Cell Biol       Date:  1984-03       Impact factor: 4.272

10.  Mapping muscle protein genes by in situ hybridization using biotin-labeled probes.

Authors:  D G Albertson
Journal:  EMBO J       Date:  1985-10       Impact factor: 11.598

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  201 in total

1.  A 12-Mb complete coverage BAC contig map in human chromosome 16p13.1-p11.2.

Authors:  Y Cao; H L Kang; X Xu; M Wang; S H Dho; J R Huh; B J Lee; F Kalush; D Bocskai; Y Ding; J G Tesmer; J Lee; E Moon; V Jurecic; A Baldini; H U Weier; N A Doggett; M I Simon; M D Adams; U J Kim
Journal:  Genome Res       Date:  1999-08       Impact factor: 9.043

2.  A 7.5 Mb sequence-ready PAC contig and gene expression map of human chromosome 11p13-p14.1.

Authors:  B Gawin; A Niederführ; N Schumacher; H Hummerich; P F Little; M Gessler
Journal:  Genome Res       Date:  1999-11       Impact factor: 9.043

3.  ODS2: a multiplatform software application for creating integrated physical and genetic maps.

Authors:  D Hall; S M Bhandarkar; J Wang
Journal:  Genetics       Date:  2001-03       Impact factor: 4.562

4.  Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis.

Authors:  Q Tao; Y L Chang; J Wang; H Chen; M N Islam-Faridi; C Scheuring; B Wang; D M Stelly; H B Zhang
Journal:  Genetics       Date:  2001-08       Impact factor: 4.562

5.  Caenorhabditis elegans levamisole resistance genes lev-1, unc-29, and unc-38 encode functional nicotinic acetylcholine receptor subunits.

Authors:  J T Fleming; M D Squire; T M Barnes; C Tornoe; K Matsuda; J Ahnn; A Fire; J E Sulston; E A Barnard; D B Sattelle; J A Lewis
Journal:  J Neurosci       Date:  1997-08-01       Impact factor: 6.167

6.  Software for automated analysis of DNA fingerprinting gels.

Authors:  Daniel R Fuhrmann; Martin I Krzywinski; Readman Chiu; Parvaneh Saeedi; Jacqueline E Schein; Ian E Bosdet; Asif Chinwalla; LaDeana W Hillier; Robert H Waterston; John D McPherson; Steven J M Jones; Marco A Marra
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

7.  A BAC- and BIBAC-based physical map of the soybean genome.

Authors:  Chengcang Wu; Shuku Sun; Padmavathi Nimmakayala; Felipe A Santos; Khalid Meksem; Rachael Springman; Kejiao Ding; David A Lightfoot; Hong-Bin Zhang
Journal:  Genome Res       Date:  2004-01-12       Impact factor: 9.043

8.  Characterization of the let-653 gene in Caenorhabditis elegans.

Authors:  S J Jones; D L Baillie
Journal:  Mol Gen Genet       Date:  1995-10-25

Review 9.  The genome of Arabidopsis thaliana.

Authors:  H M Goodman; J R Ecker; C Dean
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

10.  Physical mapping of the Myxococcus xanthus genome by random cloning in yeast artificial chromosomes.

Authors:  A Kuspa; D Vollrath; Y Cheng; D Kaiser
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

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