Literature DB >> 21593406

Ligand-gated diffusion across the bacterial outer membrane.

Bryan W Lepore1, Mridhu Indic, Hannah Pham, Elizabeth M Hearn, Dimki R Patel, Bert van den Berg.   

Abstract

Ligand-gated channels, in which a substrate transport pathway is formed as a result of the binding of a small-molecule chemical messenger, constitute a diverse class of membrane proteins with important functions in prokaryotic and eukaryotic organisms. Despite their widespread nature, no ligand-gated channels have yet been found within the outer membrane (OM) of Gram-negative bacteria. Here we show, using in vivo transport assays, intrinsic tryptophan fluorescence and X-ray crystallography, that high-affinity (submicromolar) substrate binding to the OM long-chain fatty acid transporter FadL from Escherichia coli causes conformational changes in the N terminus that open up a channel for substrate diffusion. The OM long-chain fatty acid transporter FadL from E. coli is a unique paradigm for OM diffusion-driven transport, in which ligand gating within a β-barrel membrane protein is a prerequisite for channel formation.

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Year:  2011        PMID: 21593406      PMCID: PMC3121852          DOI: 10.1073/pnas.1018532108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Going forward laterally: transmembrane passage of hydrophobic molecules through protein channel walls.

Authors:  Bert van den Berg
Journal:  Chembiochem       Date:  2010-07-05       Impact factor: 3.164

Review 2.  Molecular basis of bacterial outer membrane permeability revisited.

Authors:  Hiroshi Nikaido
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

Review 3.  The FadL family: unusual transporters for unusual substrates.

Authors:  Bert van den Berg
Journal:  Curr Opin Struct Biol       Date:  2005-08       Impact factor: 6.809

4.  Version 1.2 of the Crystallography and NMR system.

Authors:  Axel T Brunger
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 5.  TonB-dependent transporters: regulation, structure, and function.

Authors:  Nicholas Noinaj; Maude Guillier; Travis J Barnard; Susan K Buchanan
Journal:  Annu Rev Microbiol       Date:  2010       Impact factor: 15.500

6.  The measurement of free fatty acid concentration with the fluorescent probe ADIFAB: a practical guide for the use of the ADIFAB probe.

Authors:  G V Richieri; R T Ogata; A M Kleinfeld
Journal:  Mol Cell Biochem       Date:  1999-02       Impact factor: 3.396

7.  Function of the usher N-terminus in catalysing pilus assembly.

Authors:  Nadine S Henderson; Tony W Ng; Iehab Talukder; David G Thanassi
Journal:  Mol Microbiol       Date:  2010-12-22       Impact factor: 3.501

8.  Solubility of long-chain fatty acids in phosphate buffer at pH 7.4.

Authors:  H Vorum; R Brodersen; U Kragh-Hansen; A O Pedersen
Journal:  Biochim Biophys Acta       Date:  1992-06-22

9.  Transmembrane passage of hydrophobic compounds through a protein channel wall.

Authors:  Elizabeth M Hearn; Dimki R Patel; Bryan W Lepore; Mridhu Indic; Bert van den Berg
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

10.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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  32 in total

1.  How hydrophobic molecules traverse the outer membranes of gram-negative bacteria.

Authors:  Michael C Wiener; Peter S Horanyi
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-21       Impact factor: 11.205

2.  Structural biology: Lipopolysaccharide rolls out the barrel.

Authors:  Russell E Bishop
Journal:  Nature       Date:  2014-06-18       Impact factor: 49.962

Review 3.  Metabolite secretion in microorganisms: the theory of metabolic overflow put to the test.

Authors:  Farhana R Pinu; Ninna Granucci; James Daniell; Ting-Li Han; Sonia Carneiro; Isabel Rocha; Jens Nielsen; Silas G Villas-Boas
Journal:  Metabolomics       Date:  2018-03-02       Impact factor: 4.290

Review 4.  Lipopolysaccharide transport to the cell surface: periplasmic transport and assembly into the outer membrane.

Authors:  Janine M May; David J Sherman; Brent W Simpson; Natividad Ruiz; Daniel Kahne
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-10-05       Impact factor: 6.237

5.  Structural and thermodynamic characterization of the interaction between two periplasmic Treponema pallidum lipoproteins that are components of a TPR-protein-associated TRAP transporter (TPAT).

Authors:  Chad A Brautigam; Ranjit K Deka; Peter Schuck; Diana R Tomchick; Michael V Norgard
Journal:  J Mol Biol       Date:  2012-04-11       Impact factor: 5.469

6.  A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli.

Authors:  Matthias Urfer; Jasmina Bogdanovic; Fabio Lo Monte; Kerstin Moehle; Katja Zerbe; Ulrich Omasits; Christian H Ahrens; Gabriella Pessi; Leo Eberl; John A Robinson
Journal:  J Biol Chem       Date:  2015-12-01       Impact factor: 5.157

7.  An outer membrane protein undergoes enthalpy- and entropy-driven transitions.

Authors:  Belete R Cheneke; Mridhu Indic; Bert van den Berg; Liviu Movileanu
Journal:  Biochemistry       Date:  2012-06-20       Impact factor: 3.162

8.  A genome-wide screen in Escherichia coli reveals that ubiquinone is a key antioxidant for metabolism of long-chain fatty acids.

Authors:  Shashank Agrawal; Kanchan Jaswal; Anthony L Shiver; Himanshi Balecha; Tapas Patra; Rachna Chaba
Journal:  J Biol Chem       Date:  2017-10-17       Impact factor: 5.157

9.  Substrate uptake and subcellular compartmentation of anoxic cholesterol catabolism in Sterolibacterium denitrificans.

Authors:  Ching-Wen Lin; Po-Hsiang Wang; Wael Ismail; Yu-Wen Tsai; Ashraf El Nayal; Chia-Ying Yang; Fu-Chun Yang; Chia-Hsiang Wang; Yin-Ru Chiang
Journal:  J Biol Chem       Date:  2014-11-21       Impact factor: 5.157

10.  Rhizobial homologs of the fatty acid transporter FadL facilitate perception of long-chain acyl-homoserine lactone signals.

Authors:  Elizaveta Krol; Anke Becker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

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