Literature DB >> 21589537

3-(p-Anis-yl)sydnone.

Hoong-Kun Fun, Jia Hao Goh, B Kalluraya.   

Abstract

IN THE TITLE SYDNONE COMPOUND [SYSTEMATIC NAME: 3-(4-meth-oxy-phen-yl)-1,2,3-oxadiazol-3-ium-5-olate], C(9)H(8)N(2)O(3), the essentially planar oxadiazole ring [maximum deviation = 0.005 (1) Å] is inclined at a dihedral angle of 30.32 (8)° with respect to the benzene ring. In the crystal, adjacent mol-ecules are inter-connected by inter-molecular C-H⋯O hydrogen bonds into sheets lying parallel to (100). Weak inter-molecular π-π inter-actions [centroid-centroid distance = 3.5812 (8) Å] further stabilize the crystal packing.

Entities:  

Year:  2010        PMID: 21589537      PMCID: PMC3011535          DOI: 10.1107/S1600536810047422

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of the title sydnone compound, see: Hegde et al. (2008 ▶); Kalluraya & Rahiman (1997 ▶); Kalluraya et al. (2002 ▶); Rai et al. (2008 ▶). For closely related sydnone structures, see: Goh et al. (2010a ▶,b ▶,c ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C9H8N2O3 M = 192.17 Orthorhombic, a = 7.0505 (2) Å b = 9.8220 (3) Å c = 12.0934 (3) Å V = 837.47 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.56 × 0.15 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.938, T max = 0.984 7384 measured reflections 1760 independent reflections 1577 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.100 S = 1.06 1760 reflections 159 parameters All H-atom parameters refined Δρmax = 0.32 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT (Bruker, 2009 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810047422/rz2524sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810047422/rz2524Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8N2O3F(000) = 400
Mr = 192.17Dx = 1.524 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2851 reflections
a = 7.0505 (2) Åθ = 3.4–32.4°
b = 9.8220 (3) ŵ = 0.12 mm1
c = 12.0934 (3) ÅT = 100 K
V = 837.47 (4) Å3Needle, yellow
Z = 40.56 × 0.15 × 0.14 mm
Bruker SMART APEXII CCD area-detector diffractometer1760 independent reflections
Radiation source: fine-focus sealed tube1577 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 32.7°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.938, Tmax = 0.984k = −14→14
7384 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100All H-atom parameters refined
S = 1.06w = 1/[σ2(Fo2) + (0.0608P)2 + 0.0718P] where P = (Fo2 + 2Fc2)/3
1760 reflections(Δ/σ)max < 0.001
159 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.08268 (18)0.95246 (11)0.72517 (9)0.0204 (2)
O20.15734 (19)0.83477 (13)0.88211 (9)0.0252 (3)
O30.12932 (18)0.57288 (10)0.18145 (8)0.0199 (2)
N10.0695 (2)0.92968 (13)0.61277 (11)0.0199 (3)
N20.11891 (19)0.80122 (12)0.60181 (10)0.0152 (2)
C10.1632 (2)0.82919 (14)0.40336 (11)0.0157 (2)
C20.1665 (2)0.77417 (15)0.29712 (11)0.0158 (3)
C30.1284 (2)0.63583 (15)0.28173 (12)0.0160 (3)
C40.0868 (2)0.55302 (15)0.37253 (13)0.0179 (3)
C50.0829 (2)0.60641 (15)0.47811 (12)0.0165 (3)
C60.1211 (2)0.74504 (16)0.49222 (12)0.0145 (2)
C70.1622 (2)0.73661 (15)0.69641 (12)0.0173 (3)
C80.1394 (2)0.83234 (16)0.78201 (12)0.0186 (3)
C90.1403 (3)0.65840 (16)0.08473 (12)0.0205 (3)
H1A0.192 (3)0.928 (2)0.4147 (15)0.019 (5)*
H2A0.194 (3)0.831 (2)0.2340 (16)0.024 (5)*
H4A0.070 (3)0.457 (2)0.3623 (16)0.025 (5)*
H5A0.047 (3)0.5524 (19)0.5411 (15)0.015 (5)*
H7A0.203 (3)0.641 (2)0.6995 (17)0.026 (5)*
H9A0.124 (3)0.603 (2)0.0190 (16)0.020 (5)*
H9B0.040 (3)0.723 (2)0.0852 (16)0.023 (5)*
H9C0.262 (4)0.708 (3)0.0800 (19)0.041 (7)*
U11U22U33U12U13U23
O10.0255 (5)0.0180 (5)0.0179 (5)0.0014 (5)0.0003 (5)−0.0028 (4)
O20.0316 (6)0.0267 (5)0.0172 (5)−0.0033 (6)−0.0014 (5)−0.0011 (4)
O30.0290 (6)0.0155 (5)0.0151 (5)0.0016 (4)−0.0015 (4)−0.0013 (3)
N10.0258 (6)0.0151 (5)0.0188 (6)0.0035 (5)−0.0003 (5)−0.0016 (4)
N20.0152 (5)0.0141 (5)0.0163 (5)−0.0003 (4)−0.0002 (4)0.0006 (4)
C10.0168 (6)0.0136 (5)0.0167 (6)−0.0008 (5)−0.0016 (5)0.0004 (4)
C20.0168 (6)0.0136 (6)0.0169 (6)−0.0011 (5)−0.0010 (5)0.0016 (4)
C30.0154 (6)0.0158 (6)0.0169 (6)0.0007 (5)−0.0016 (5)−0.0013 (4)
C40.0213 (7)0.0130 (5)0.0195 (6)−0.0017 (5)0.0001 (5)0.0000 (5)
C50.0166 (6)0.0138 (5)0.0191 (6)−0.0013 (5)0.0004 (6)0.0010 (5)
C60.0138 (6)0.0142 (5)0.0154 (5)0.0001 (5)0.0004 (5)−0.0003 (4)
C70.0190 (6)0.0167 (6)0.0164 (6)−0.0002 (5)−0.0007 (5)0.0016 (5)
C80.0176 (6)0.0188 (6)0.0192 (6)−0.0014 (6)−0.0003 (6)0.0006 (5)
C90.0256 (7)0.0200 (6)0.0159 (6)0.0019 (6)−0.0014 (6)−0.0002 (5)
O1—N11.3807 (16)C2—H2A0.97 (2)
O1—C81.4227 (19)C3—C41.398 (2)
O2—C81.2174 (18)C4—C51.381 (2)
O3—C31.3613 (17)C4—H4A0.95 (2)
O3—C91.4421 (18)C5—C61.398 (2)
N1—N21.3158 (16)C5—H5A0.961 (19)
N2—C71.3434 (17)C7—C81.408 (2)
N2—C61.4356 (18)C7—H7A0.98 (2)
C1—C61.388 (2)C9—H9A0.97 (2)
C1—C21.3940 (19)C9—H9B0.95 (2)
C1—H1A1.00 (2)C9—H9C0.99 (3)
C2—C31.3976 (19)
N1—O1—C8111.11 (12)C4—C5—C6118.61 (13)
C3—O3—C9117.27 (11)C4—C5—H5A121.9 (11)
N2—N1—O1103.69 (12)C6—C5—H5A119.4 (11)
N1—N2—C7115.30 (12)C1—C6—C5121.77 (14)
N1—N2—C6117.68 (12)C1—C6—N2119.22 (13)
C7—N2—C6127.02 (12)C5—C6—N2119.00 (13)
C6—C1—C2119.11 (13)N2—C7—C8106.54 (13)
C6—C1—H1A121.0 (11)N2—C7—H7A123.4 (12)
C2—C1—H1A119.9 (11)C8—C7—H7A130.1 (12)
C1—C2—C3119.76 (13)O2—C8—C7137.09 (16)
C1—C2—H2A120.5 (13)O2—C8—O1119.56 (14)
C3—C2—H2A119.8 (13)C7—C8—O1103.34 (12)
O3—C3—C4115.89 (13)O3—C9—H9A109.4 (12)
O3—C3—C2124.01 (13)O3—C9—H9B110.2 (12)
C4—C3—C2120.10 (13)H9A—C9—H9B107.0 (17)
C5—C4—C3120.65 (13)O3—C9—H9C112.3 (15)
C5—C4—H4A119.4 (12)H9A—C9—H9C109.3 (18)
C3—C4—H4A119.8 (12)H9B—C9—H9C108.5 (19)
C8—O1—N1—N2−0.84 (16)C4—C5—C6—C1−0.2 (2)
O1—N1—N2—C70.46 (17)C4—C5—C6—N2−179.47 (14)
O1—N1—N2—C6−179.58 (12)N1—N2—C6—C130.90 (19)
C6—C1—C2—C3−0.2 (2)C7—N2—C6—C1−149.14 (15)
C9—O3—C3—C4169.99 (14)N1—N2—C6—C5−149.86 (15)
C9—O3—C3—C2−10.3 (2)C7—N2—C6—C530.1 (2)
C1—C2—C3—O3−179.64 (13)N1—N2—C7—C80.09 (18)
C1—C2—C3—C40.0 (2)C6—N2—C7—C8−179.87 (13)
O3—C3—C4—C5179.72 (14)N2—C7—C8—O2−179.70 (19)
C2—C3—C4—C50.0 (2)N2—C7—C8—O1−0.58 (16)
C3—C4—C5—C60.1 (2)N1—O1—C8—O2−179.79 (14)
C2—C1—C6—C50.3 (2)N1—O1—C8—C70.89 (17)
C2—C1—C6—N2179.53 (13)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O2i1.00 (2)2.59 (2)3.5441 (19)159.1 (15)
C7—H7A···O3ii0.98 (2)2.42 (2)3.3814 (18)165.7 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O2i1.00 (2)2.59 (2)3.5441 (19)159.1 (15)
C7—H7A⋯O3ii0.98 (2)2.42 (2)3.3814 (18)165.7 (17)

Symmetry codes: (i) ; (ii) .

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