| Literature DB >> 21589537 |
Hoong-Kun Fun, Jia Hao Goh, B Kalluraya.
Abstract
IN THE TITLE SYDNONE COMPOUND [SYSTEMATIC NAME: 3-(4-meth-oxy-phen-yl)-1,2,3-oxadiazol-3-ium-5-olate], C(9)H(8)N(2)O(3), the essentially planar oxadiazole ring [maximum deviation = 0.005 (1) Å] is inclined at a dihedral angle of 30.32 (8)° with respect to the benzene ring. In the crystal, adjacent mol-ecules are inter-connected by inter-molecular C-H⋯O hydrogen bonds into sheets lying parallel to (100). Weak inter-molecular π-π inter-actions [centroid-centroid distance = 3.5812 (8) Å] further stabilize the crystal packing.Entities:
Year: 2010 PMID: 21589537 PMCID: PMC3011535 DOI: 10.1107/S1600536810047422
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H8N2O3 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 2851 reflections |
| θ = 3.4–32.4° | |
| µ = 0.12 mm−1 | |
| Needle, yellow | |
| 0.56 × 0.15 × 0.14 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 1760 independent reflections |
| Radiation source: fine-focus sealed tube | 1577 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.7°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 7384 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 1760 reflections | (Δ/σ)max < 0.001 |
| 159 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.08268 (18) | 0.95246 (11) | 0.72517 (9) | 0.0204 (2) | |
| O2 | 0.15734 (19) | 0.83477 (13) | 0.88211 (9) | 0.0252 (3) | |
| O3 | 0.12932 (18) | 0.57288 (10) | 0.18145 (8) | 0.0199 (2) | |
| N1 | 0.0695 (2) | 0.92968 (13) | 0.61277 (11) | 0.0199 (3) | |
| N2 | 0.11891 (19) | 0.80122 (12) | 0.60181 (10) | 0.0152 (2) | |
| C1 | 0.1632 (2) | 0.82919 (14) | 0.40336 (11) | 0.0157 (2) | |
| C2 | 0.1665 (2) | 0.77417 (15) | 0.29712 (11) | 0.0158 (3) | |
| C3 | 0.1284 (2) | 0.63583 (15) | 0.28173 (12) | 0.0160 (3) | |
| C4 | 0.0868 (2) | 0.55302 (15) | 0.37253 (13) | 0.0179 (3) | |
| C5 | 0.0829 (2) | 0.60641 (15) | 0.47811 (12) | 0.0165 (3) | |
| C6 | 0.1211 (2) | 0.74504 (16) | 0.49222 (12) | 0.0145 (2) | |
| C7 | 0.1622 (2) | 0.73661 (15) | 0.69641 (12) | 0.0173 (3) | |
| C8 | 0.1394 (2) | 0.83234 (16) | 0.78201 (12) | 0.0186 (3) | |
| C9 | 0.1403 (3) | 0.65840 (16) | 0.08473 (12) | 0.0205 (3) | |
| H1A | 0.192 (3) | 0.928 (2) | 0.4147 (15) | 0.019 (5)* | |
| H2A | 0.194 (3) | 0.831 (2) | 0.2340 (16) | 0.024 (5)* | |
| H4A | 0.070 (3) | 0.457 (2) | 0.3623 (16) | 0.025 (5)* | |
| H5A | 0.047 (3) | 0.5524 (19) | 0.5411 (15) | 0.015 (5)* | |
| H7A | 0.203 (3) | 0.641 (2) | 0.6995 (17) | 0.026 (5)* | |
| H9A | 0.124 (3) | 0.603 (2) | 0.0190 (16) | 0.020 (5)* | |
| H9B | 0.040 (3) | 0.723 (2) | 0.0852 (16) | 0.023 (5)* | |
| H9C | 0.262 (4) | 0.708 (3) | 0.0800 (19) | 0.041 (7)* |
| O1 | 0.0255 (5) | 0.0180 (5) | 0.0179 (5) | 0.0014 (5) | 0.0003 (5) | −0.0028 (4) |
| O2 | 0.0316 (6) | 0.0267 (5) | 0.0172 (5) | −0.0033 (6) | −0.0014 (5) | −0.0011 (4) |
| O3 | 0.0290 (6) | 0.0155 (5) | 0.0151 (5) | 0.0016 (4) | −0.0015 (4) | −0.0013 (3) |
| N1 | 0.0258 (6) | 0.0151 (5) | 0.0188 (6) | 0.0035 (5) | −0.0003 (5) | −0.0016 (4) |
| N2 | 0.0152 (5) | 0.0141 (5) | 0.0163 (5) | −0.0003 (4) | −0.0002 (4) | 0.0006 (4) |
| C1 | 0.0168 (6) | 0.0136 (5) | 0.0167 (6) | −0.0008 (5) | −0.0016 (5) | 0.0004 (4) |
| C2 | 0.0168 (6) | 0.0136 (6) | 0.0169 (6) | −0.0011 (5) | −0.0010 (5) | 0.0016 (4) |
| C3 | 0.0154 (6) | 0.0158 (6) | 0.0169 (6) | 0.0007 (5) | −0.0016 (5) | −0.0013 (4) |
| C4 | 0.0213 (7) | 0.0130 (5) | 0.0195 (6) | −0.0017 (5) | 0.0001 (5) | 0.0000 (5) |
| C5 | 0.0166 (6) | 0.0138 (5) | 0.0191 (6) | −0.0013 (5) | 0.0004 (6) | 0.0010 (5) |
| C6 | 0.0138 (6) | 0.0142 (5) | 0.0154 (5) | 0.0001 (5) | 0.0004 (5) | −0.0003 (4) |
| C7 | 0.0190 (6) | 0.0167 (6) | 0.0164 (6) | −0.0002 (5) | −0.0007 (5) | 0.0016 (5) |
| C8 | 0.0176 (6) | 0.0188 (6) | 0.0192 (6) | −0.0014 (6) | −0.0003 (6) | 0.0006 (5) |
| C9 | 0.0256 (7) | 0.0200 (6) | 0.0159 (6) | 0.0019 (6) | −0.0014 (6) | −0.0002 (5) |
| O1—N1 | 1.3807 (16) | C2—H2A | 0.97 (2) |
| O1—C8 | 1.4227 (19) | C3—C4 | 1.398 (2) |
| O2—C8 | 1.2174 (18) | C4—C5 | 1.381 (2) |
| O3—C3 | 1.3613 (17) | C4—H4A | 0.95 (2) |
| O3—C9 | 1.4421 (18) | C5—C6 | 1.398 (2) |
| N1—N2 | 1.3158 (16) | C5—H5A | 0.961 (19) |
| N2—C7 | 1.3434 (17) | C7—C8 | 1.408 (2) |
| N2—C6 | 1.4356 (18) | C7—H7A | 0.98 (2) |
| C1—C6 | 1.388 (2) | C9—H9A | 0.97 (2) |
| C1—C2 | 1.3940 (19) | C9—H9B | 0.95 (2) |
| C1—H1A | 1.00 (2) | C9—H9C | 0.99 (3) |
| C2—C3 | 1.3976 (19) | ||
| N1—O1—C8 | 111.11 (12) | C4—C5—C6 | 118.61 (13) |
| C3—O3—C9 | 117.27 (11) | C4—C5—H5A | 121.9 (11) |
| N2—N1—O1 | 103.69 (12) | C6—C5—H5A | 119.4 (11) |
| N1—N2—C7 | 115.30 (12) | C1—C6—C5 | 121.77 (14) |
| N1—N2—C6 | 117.68 (12) | C1—C6—N2 | 119.22 (13) |
| C7—N2—C6 | 127.02 (12) | C5—C6—N2 | 119.00 (13) |
| C6—C1—C2 | 119.11 (13) | N2—C7—C8 | 106.54 (13) |
| C6—C1—H1A | 121.0 (11) | N2—C7—H7A | 123.4 (12) |
| C2—C1—H1A | 119.9 (11) | C8—C7—H7A | 130.1 (12) |
| C1—C2—C3 | 119.76 (13) | O2—C8—C7 | 137.09 (16) |
| C1—C2—H2A | 120.5 (13) | O2—C8—O1 | 119.56 (14) |
| C3—C2—H2A | 119.8 (13) | C7—C8—O1 | 103.34 (12) |
| O3—C3—C4 | 115.89 (13) | O3—C9—H9A | 109.4 (12) |
| O3—C3—C2 | 124.01 (13) | O3—C9—H9B | 110.2 (12) |
| C4—C3—C2 | 120.10 (13) | H9A—C9—H9B | 107.0 (17) |
| C5—C4—C3 | 120.65 (13) | O3—C9—H9C | 112.3 (15) |
| C5—C4—H4A | 119.4 (12) | H9A—C9—H9C | 109.3 (18) |
| C3—C4—H4A | 119.8 (12) | H9B—C9—H9C | 108.5 (19) |
| C8—O1—N1—N2 | −0.84 (16) | C4—C5—C6—C1 | −0.2 (2) |
| O1—N1—N2—C7 | 0.46 (17) | C4—C5—C6—N2 | −179.47 (14) |
| O1—N1—N2—C6 | −179.58 (12) | N1—N2—C6—C1 | 30.90 (19) |
| C6—C1—C2—C3 | −0.2 (2) | C7—N2—C6—C1 | −149.14 (15) |
| C9—O3—C3—C4 | 169.99 (14) | N1—N2—C6—C5 | −149.86 (15) |
| C9—O3—C3—C2 | −10.3 (2) | C7—N2—C6—C5 | 30.1 (2) |
| C1—C2—C3—O3 | −179.64 (13) | N1—N2—C7—C8 | 0.09 (18) |
| C1—C2—C3—C4 | 0.0 (2) | C6—N2—C7—C8 | −179.87 (13) |
| O3—C3—C4—C5 | 179.72 (14) | N2—C7—C8—O2 | −179.70 (19) |
| C2—C3—C4—C5 | 0.0 (2) | N2—C7—C8—O1 | −0.58 (16) |
| C3—C4—C5—C6 | 0.1 (2) | N1—O1—C8—O2 | −179.79 (14) |
| C2—C1—C6—C5 | 0.3 (2) | N1—O1—C8—C7 | 0.89 (17) |
| C2—C1—C6—N2 | 179.53 (13) |
| H··· | ||||
| C1—H1A···O2i | 1.00 (2) | 2.59 (2) | 3.5441 (19) | 159.1 (15) |
| C7—H7A···O3ii | 0.98 (2) | 2.42 (2) | 3.3814 (18) | 165.7 (17) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C1—H1 | 1.00 (2) | 2.59 (2) | 3.5441 (19) | 159.1 (15) |
| C7—H7 | 0.98 (2) | 2.42 (2) | 3.3814 (18) | 165.7 (17) |
Symmetry codes: (i) ; (ii) .