Literature DB >> 21579356

3-(2,3-Dimethyl-5-oxo-1-phenyl-2,5-di-hydro-1H-pyrazol-4-yl)sydnone.

Jia Hao Goh, Hoong-Kun Fun, B Kalluraya.   

Abstract

IN THE TITLE SYDNONE COMPOUND [SYSTEMATIC NAME: 3-(2,3-dimethyl-5-oxo-1-phenyl-2,5-dihydro-1H-pyrazol-4-yl)-1,2,3-oxadiazol-3-ium-5-olate], C(13)H(12)N(4)O(3), the oxadiazole and pyrazole rings are essentially planar [maximum deviations = 0.006 (1) and 0.019 (1) Å, respectively] and are inclined at inter-planar angles of 37.84 (4) and 46.60 (4)°, respectively, with respect to the benzene ring. In the crystal, adjacent mol-ecules are inter-connected into a three-dimensional supra-molecular network via inter-molecular C-H⋯O hydrogen bonds. Weak inter-molecular π-π aromatic stacking inter-actions [centroid-centroid distance = 3.5251 (5) Å] further stabilize the crystal packing.

Entities:  

Year:  2010        PMID: 21579356      PMCID: PMC2979459          DOI: 10.1107/S1600536810015667

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of sydnone derivatives, see: Baker et al. (1949 ▶); Hedge et al. (2008 ▶); Rai et al. (2008 ▶). For the preparation of 3-aryl sydnones, see Kalluraya et al. (2004 ▶); Rai et al. (2008 ▶). For related structures, see: Baker & Ollis (1957 ▶); Goh et al. (2009 ▶, 2010 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C13H12N4O3 M = 272.27 Monoclinic, a = 10.6525 (3) Å b = 7.3014 (3) Å c = 15.6828 (4) Å β = 93.982 (1)° V = 1216.83 (7) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.56 × 0.17 × 0.08 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.941, T max = 0.992 44010 measured reflections 6426 independent reflections 4895 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.125 S = 1.04 6426 reflections 229 parameters All H-atom parameters refined Δρmax = 0.55 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810015667/sj2767sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810015667/sj2767Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12N4O3F(000) = 568
Mr = 272.27Dx = 1.486 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9368 reflections
a = 10.6525 (3) Åθ = 3.1–37.4°
b = 7.3014 (3) ŵ = 0.11 mm1
c = 15.6828 (4) ÅT = 100 K
β = 93.982 (1)°Block, brown
V = 1216.83 (7) Å30.56 × 0.17 × 0.08 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer6426 independent reflections
Radiation source: fine-focus sealed tube4895 reflections with I > 2σ(I)
graphiteRint = 0.048
φ and ω scansθmax = 37.6°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→18
Tmin = 0.941, Tmax = 0.992k = −12→12
44010 measured reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.0663P)2 + 0.1919P] where P = (Fo2 + 2Fc2)/3
6426 reflections(Δ/σ)max = 0.001
229 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.41 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.93586 (5)1.20867 (9)0.00540 (4)0.02015 (12)
O20.51808 (5)1.07724 (9)0.11293 (4)0.01697 (11)
O30.83681 (6)1.19975 (11)−0.12824 (4)0.02477 (14)
N10.59770 (5)0.96695 (9)0.24595 (4)0.01428 (11)
N20.71755 (6)0.94159 (9)0.28563 (4)0.01458 (11)
N30.79599 (6)1.09624 (9)0.08032 (4)0.01374 (11)
N40.91049 (6)1.16505 (11)0.08800 (4)0.01949 (13)
C10.37495 (7)0.95237 (11)0.26642 (5)0.01608 (13)
C20.27426 (7)0.99016 (12)0.31562 (6)0.01978 (14)
C30.29319 (8)1.07726 (13)0.39442 (6)0.02155 (15)
C40.41384 (8)1.12975 (12)0.42404 (5)0.01955 (14)
C50.51539 (7)1.09504 (11)0.37507 (5)0.01622 (13)
C60.49514 (6)1.00508 (10)0.29691 (4)0.01404 (12)
C70.80407 (6)0.97734 (10)0.22937 (5)0.01404 (12)
C80.74125 (6)1.03529 (10)0.15426 (4)0.01342 (12)
C90.60776 (6)1.03268 (10)0.16264 (4)0.01363 (12)
C100.83202 (7)1.16748 (12)−0.05217 (5)0.01728 (13)
C110.74198 (7)1.09301 (11)−0.00008 (5)0.01608 (13)
C120.73637 (7)0.82345 (12)0.36075 (5)0.01818 (14)
C130.93987 (7)0.94884 (12)0.25274 (5)0.01862 (14)
H1A0.3617 (12)0.8870 (19)0.2119 (9)0.023 (3)*
H2A0.1903 (13)0.953 (2)0.2965 (9)0.030 (3)*
H3A0.2226 (13)1.100 (2)0.4312 (9)0.031 (3)*
H4A0.4263 (14)1.193 (2)0.4800 (10)0.035 (4)*
H5A0.5999 (12)1.134 (2)0.3956 (8)0.026 (3)*
H11A0.6593 (12)1.0502 (18)−0.0133 (9)0.023 (3)*
H13A0.9830 (14)0.939 (2)0.2013 (9)0.033 (4)*
H13B0.9704 (14)1.055 (2)0.2880 (10)0.040 (4)*
H13C0.9524 (14)0.841 (2)0.2879 (10)0.036 (4)*
H12A0.7723 (15)0.894 (2)0.4061 (10)0.040 (4)*
H12B0.6549 (12)0.7786 (18)0.3781 (8)0.024 (3)*
H12C0.7870 (14)0.718 (2)0.3489 (9)0.033 (4)*
U11U22U33U12U13U23
O10.0160 (2)0.0304 (3)0.0140 (2)−0.0050 (2)0.00113 (18)0.0030 (2)
O20.0129 (2)0.0238 (3)0.0137 (2)0.00159 (19)−0.00223 (17)−0.00001 (19)
O30.0216 (3)0.0389 (4)0.0139 (2)−0.0011 (2)0.0019 (2)0.0053 (2)
N10.0093 (2)0.0214 (3)0.0119 (2)0.00001 (19)−0.00034 (18)0.0004 (2)
N20.0103 (2)0.0204 (3)0.0128 (2)0.00010 (19)−0.00083 (18)0.0023 (2)
N30.0120 (2)0.0165 (3)0.0126 (2)−0.00043 (19)0.00062 (18)−0.00050 (19)
N40.0159 (3)0.0288 (4)0.0138 (3)−0.0064 (2)0.0007 (2)0.0014 (2)
C10.0118 (3)0.0194 (3)0.0169 (3)0.0000 (2)0.0002 (2)0.0015 (2)
C20.0124 (3)0.0245 (4)0.0227 (3)0.0014 (2)0.0026 (2)0.0057 (3)
C30.0192 (3)0.0260 (4)0.0202 (3)0.0055 (3)0.0071 (3)0.0056 (3)
C40.0232 (3)0.0210 (3)0.0150 (3)0.0042 (3)0.0047 (3)0.0022 (3)
C50.0169 (3)0.0183 (3)0.0134 (3)−0.0001 (2)0.0008 (2)0.0002 (2)
C60.0119 (3)0.0171 (3)0.0132 (3)0.0001 (2)0.0016 (2)0.0007 (2)
C70.0114 (2)0.0171 (3)0.0136 (3)0.0003 (2)0.0006 (2)0.0003 (2)
C80.0116 (2)0.0170 (3)0.0116 (3)−0.0001 (2)0.0009 (2)0.0005 (2)
C90.0124 (3)0.0165 (3)0.0119 (3)−0.0003 (2)0.0002 (2)−0.0008 (2)
C100.0145 (3)0.0229 (3)0.0144 (3)0.0006 (2)0.0006 (2)0.0010 (2)
C110.0137 (3)0.0219 (3)0.0125 (3)−0.0006 (2)−0.0003 (2)0.0008 (2)
C120.0169 (3)0.0237 (4)0.0138 (3)−0.0005 (3)−0.0008 (2)0.0042 (3)
C130.0115 (3)0.0256 (4)0.0186 (3)0.0024 (2)−0.0004 (2)0.0030 (3)
O1—N41.3789 (9)C3—C41.3898 (13)
O1—C101.4108 (10)C3—H3A0.993 (14)
O2—C91.2340 (9)C4—C51.3926 (11)
O3—C101.2205 (9)C4—H4A0.992 (15)
N1—N21.3933 (8)C5—C61.3941 (10)
N1—C91.4030 (9)C5—H5A0.978 (13)
N1—C61.4252 (9)C7—C81.3801 (10)
N2—C71.3450 (9)C7—C131.4821 (10)
N2—C121.4626 (10)C8—C91.4373 (10)
N3—N41.3169 (9)C10—C111.4113 (10)
N3—C111.3494 (10)C11—H11A0.944 (13)
N3—C81.4060 (9)C12—H12A0.939 (16)
C1—C61.3896 (10)C12—H12B0.984 (13)
C1—C21.3916 (11)C12—H12C0.964 (15)
C1—H1A0.981 (13)C13—H13A0.958 (15)
C2—C31.3920 (13)C13—H13B0.993 (16)
C2—H2A0.962 (15)C13—H13C0.962 (16)
N4—O1—C10110.85 (6)C5—C6—N1120.48 (6)
N2—N1—C9109.54 (5)N2—C7—C8107.80 (6)
N2—N1—C6119.34 (6)N2—C7—C13120.80 (7)
C9—N1—C6124.51 (6)C8—C7—C13131.39 (7)
C7—N2—N1109.25 (6)C7—C8—N3126.63 (6)
C7—N2—C12125.52 (6)C7—C8—C9110.00 (6)
N1—N2—C12120.54 (6)N3—C8—C9123.32 (6)
N4—N3—C11115.11 (6)O2—C9—N1124.94 (6)
N4—N3—C8118.67 (6)O2—C9—C8131.77 (7)
C11—N3—C8126.22 (6)N1—C9—C8103.28 (6)
N3—N4—O1104.05 (6)O3—C10—O1120.01 (7)
C6—C1—C2118.78 (7)O3—C10—C11135.75 (7)
C6—C1—H1A120.5 (8)O1—C10—C11104.24 (6)
C2—C1—H1A120.7 (8)N3—C11—C10105.74 (6)
C1—C2—C3120.87 (7)N3—C11—H11A122.8 (8)
C1—C2—H2A120.5 (9)C10—C11—H11A131.5 (8)
C3—C2—H2A118.6 (9)N2—C12—H12A108.2 (10)
C4—C3—C2119.75 (7)N2—C12—H12B110.2 (8)
C4—C3—H3A118.7 (8)H12A—C12—H12B107.1 (12)
C2—C3—H3A121.6 (9)N2—C12—H12C111.3 (9)
C3—C4—C5120.08 (8)H12A—C12—H12C112.3 (13)
C3—C4—H4A119.2 (9)H12B—C12—H12C107.6 (12)
C5—C4—H4A120.7 (9)C7—C13—H13A108.6 (9)
C4—C5—C6119.46 (7)C7—C13—H13B107.8 (9)
C4—C5—H5A119.9 (8)H13A—C13—H13B111.8 (12)
C6—C5—H5A120.7 (8)C7—C13—H13C110.5 (9)
C1—C6—C5121.04 (7)H13A—C13—H13C111.3 (13)
C1—C6—N1118.48 (7)H13B—C13—H13C106.8 (13)
C9—N1—N2—C7−3.85 (9)N2—C7—C8—N3176.29 (7)
C6—N1—N2—C7−156.60 (7)C13—C7—C8—N3−5.07 (14)
C9—N1—N2—C12−160.86 (7)N2—C7—C8—C9−1.23 (9)
C6—N1—N2—C1246.38 (10)C13—C7—C8—C9177.42 (8)
C11—N3—N4—O1−1.06 (9)N4—N3—C8—C7−24.91 (12)
C8—N3—N4—O1179.40 (6)C11—N3—C8—C7155.61 (8)
C10—O1—N4—N31.21 (9)N4—N3—C8—C9152.29 (8)
C6—C1—C2—C3−0.73 (12)C11—N3—C8—C9−27.19 (12)
C1—C2—C3—C40.93 (13)N2—N1—C9—O2−176.15 (7)
C2—C3—C4—C5−0.10 (13)C6—N1—C9—O2−25.12 (12)
C3—C4—C5—C6−0.92 (12)N2—N1—C9—C82.90 (8)
C2—C1—C6—C5−0.31 (12)C6—N1—C9—C8153.93 (7)
C2—C1—C6—N1−179.62 (7)C7—C8—C9—O2177.90 (8)
C4—C5—C6—C11.14 (12)N3—C8—C9—O20.29 (13)
C4—C5—C6—N1−179.58 (7)C7—C8—C9—N1−1.05 (8)
N2—N1—C6—C1−152.08 (7)N3—C8—C9—N1−178.67 (7)
C9—N1—C6—C159.49 (10)N4—O1—C10—O3178.89 (8)
N2—N1—C6—C528.61 (11)N4—O1—C10—C11−0.94 (9)
C9—N1—C6—C5−119.82 (8)N4—N3—C11—C100.50 (10)
N1—N2—C7—C83.07 (9)C8—N3—C11—C10180.00 (7)
C12—N2—C7—C8158.67 (7)O3—C10—C11—N3−179.50 (10)
N1—N2—C7—C13−175.74 (7)O1—C10—C11—N30.29 (9)
C12—N2—C7—C13−20.15 (12)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O3i0.981 (14)2.492 (13)3.2155 (10)130.4 (10)
C11—H11A···O2i0.944 (13)2.543 (13)3.4163 (10)153.9 (11)
C12—H12B···O2ii0.984 (13)2.369 (13)3.3022 (10)158.1 (11)
C13—H13A···O3iii0.958 (14)2.516 (15)3.3606 (10)147.0 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O3i0.981 (14)2.492 (13)3.2155 (10)130.4 (10)
C11—H11A⋯O2i0.944 (13)2.543 (13)3.4163 (10)153.9 (11)
C12—H12B⋯O2ii0.984 (13)2.369 (13)3.3022 (10)158.1 (11)
C13—H13A⋯O3iii0.958 (14)2.516 (15)3.3606 (10)147.0 (12)

Symmetry codes: (i) ; (ii) ; (iii) .

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