| Literature DB >> 21522859 |
Hossein Aghabozorg, Azadeh Mofidi Rouchi, Behrouz Notash, Masoud Mirzaei.
Abstract
The asymmetric unit of the title compound, (C(6)H(9)N(2))(2)[Cu(C(7)H(3)NO(4))(2)], contains half of a [Cu(pydc)(2)](2-) (pydcH(2) is pyridine-2,6-dicarb-oxy-lic acid) anion and one protonated 2-amino-4-methyl-pyridine (2a4mpH)(+) counter-ion. The anion is a six-coordinated complex with a distorted CuN(2)O(4) octa-hedral geometry around the Cu(II) ion. N-H⋯O and C-H⋯O hydrogen bonds along with π-π contacts between the pyridine rings of the (2a4mpH)(+) cations [centroid-centroid distance = 3.573 (2) Å] stabilize the crystal structure.Entities:
Year: 2011 PMID: 21522859 PMCID: PMC3051671 DOI: 10.1107/S1600536811001139
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C6H9N2)2[Cu(C7H3NO4)2] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 3509 reflections |
| θ = 2.9–29.2° | |
| µ = 0.9 mm−1 | |
| β = 107.01 (3)° | Needle, blue |
| 0.45 × 0.15 × 0.1 mm | |
| Stoe IPDS II diffractometer | 3509 independent reflections |
| Radiation source: fine-focus sealed tube | 2785 reflections with |
| graphite | |
| Detector resolution: 0.15 mm pixels mm-1 | θmax = 29.2°, θmin = 2.9° |
| rotation method scans | |
| Absorption correction: numerical [shape of crystal determined optically ( | |
| 8829 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3509 reflections | (Δ/σ)max < 0.001 |
| 201 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C2 | 0.04362 (14) | 0.1040 (2) | 0.8614 (4) | 0.0350 (6) | |
| O2 | 0.13708 (12) | 0.1246 (2) | 1.0589 (3) | 0.0592 (7) | |
| O1 | 0.07172 (11) | 0.23932 (17) | 1.0341 (3) | 0.0475 (6) | |
| C7 | 0.04400 (13) | 0.5659 (2) | 0.7068 (4) | 0.0338 (6) | |
| H7 | 0.0734 | 0.5980 | 0.6770 | 0.041* | |
| C8 | 0.0000 | 0.6143 (3) | 0.7500 | 0.0359 (9) | |
| H8 | 0.0000 | 0.6796 | 0.7500 | 0.043* | |
| Cu1 | 0.0000 | 0.29007 (3) | 0.7500 | 0.02835 (14) | |
| N2 | 0.0000 | 0.4244 (2) | 0.7500 | 0.0266 (6) | |
| N4 | 0.11686 (12) | 0.2123 (2) | 0.4309 (4) | 0.0461 (7) | |
| O3 | 0.07121 (9) | 0.31454 (14) | 0.6690 (3) | 0.0370 (5) | |
| N3 | 0.19892 (12) | 0.14346 (19) | 0.3935 (4) | 0.0388 (6) | |
| N1 | 0.0000 | 0.1521 (2) | 0.7500 | 0.0318 (7) | |
| C9 | 0.17056 (13) | 0.1785 (2) | 0.5020 (4) | 0.0345 (6) | |
| C11 | 0.25320 (16) | 0.1393 (2) | 0.7462 (4) | 0.0444 (7) | |
| C10 | 0.19805 (15) | 0.1743 (2) | 0.6831 (4) | 0.0420 (7) | |
| H10 | 0.1786 | 0.1957 | 0.7608 | 0.050* | |
| O4 | 0.12832 (10) | 0.43226 (18) | 0.6314 (3) | 0.0493 (6) | |
| C6 | 0.04298 (11) | 0.46879 (19) | 0.7094 (3) | 0.0272 (5) | |
| C5 | 0.08574 (12) | 0.4019 (2) | 0.6666 (4) | 0.0320 (6) | |
| C13 | 0.28131 (16) | 0.1052 (3) | 0.6265 (5) | 0.0516 (9) | |
| H13 | 0.3188 | 0.0808 | 0.6665 | 0.062* | |
| C14 | 0.25339 (15) | 0.1082 (3) | 0.4529 (5) | 0.0485 (8) | |
| H14 | 0.2719 | 0.0859 | 0.3734 | 0.058* | |
| C12 | 0.2851 (2) | 0.1384 (3) | 0.9394 (5) | 0.0679 (12) | |
| H12A | 0.3097 | 0.1927 | 0.9684 | 0.102* | |
| H12B | 0.3084 | 0.0826 | 0.9675 | 0.102* | |
| H12C | 0.2574 | 0.1393 | 1.0052 | 0.102* | |
| C1 | 0.08860 (15) | 0.1616 (2) | 0.9957 (4) | 0.0395 (7) | |
| C3 | 0.04539 (18) | 0.0064 (2) | 0.8605 (5) | 0.0485 (8) | |
| H3 | 0.0770 | −0.0255 | 0.9339 | 0.058* | |
| C4 | 0.0000 | −0.0425 (3) | 0.7500 | 0.0591 (15) | |
| H4 | 0.0000 | −0.1079 | 0.7500 | 0.071* | |
| H3A | 0.1810 (18) | 0.148 (3) | 0.275 (5) | 0.057 (11)* | |
| H4B | 0.1012 (19) | 0.245 (3) | 0.501 (6) | 0.062 (12)* | |
| H4A | 0.108 (2) | 0.225 (3) | 0.322 (7) | 0.074 (15)* |
| C2 | 0.0432 (17) | 0.0305 (14) | 0.0316 (14) | 0.0044 (12) | 0.0116 (13) | −0.0005 (11) |
| O2 | 0.0498 (15) | 0.0694 (18) | 0.0477 (14) | 0.0226 (13) | −0.0024 (12) | −0.0063 (12) |
| O1 | 0.0519 (14) | 0.0415 (13) | 0.0427 (12) | 0.0065 (11) | 0.0036 (11) | −0.0087 (10) |
| C7 | 0.0291 (14) | 0.0305 (14) | 0.0372 (14) | −0.0073 (11) | 0.0026 (12) | 0.0014 (11) |
| C8 | 0.033 (2) | 0.0240 (18) | 0.042 (2) | 0.000 | −0.0011 (18) | 0.000 |
| Cu1 | 0.0325 (3) | 0.0218 (2) | 0.0336 (2) | 0.000 | 0.01408 (19) | 0.000 |
| N2 | 0.0261 (16) | 0.0261 (15) | 0.0273 (15) | 0.000 | 0.0072 (13) | 0.000 |
| N4 | 0.0400 (14) | 0.0526 (17) | 0.0444 (15) | 0.0111 (14) | 0.0100 (12) | −0.0122 (15) |
| O3 | 0.0376 (11) | 0.0338 (11) | 0.0444 (11) | 0.0037 (9) | 0.0193 (10) | −0.0036 (9) |
| N3 | 0.0367 (14) | 0.0414 (14) | 0.0378 (13) | 0.0074 (11) | 0.0102 (11) | −0.0009 (11) |
| N1 | 0.042 (2) | 0.0233 (15) | 0.0304 (16) | 0.000 | 0.0112 (15) | 0.000 |
| C9 | 0.0320 (14) | 0.0303 (13) | 0.0410 (15) | −0.0003 (11) | 0.0104 (12) | −0.0066 (11) |
| C11 | 0.0478 (18) | 0.0351 (16) | 0.0440 (17) | −0.0024 (14) | 0.0033 (14) | −0.0012 (14) |
| C10 | 0.0445 (18) | 0.0415 (16) | 0.0399 (16) | 0.0009 (14) | 0.0120 (14) | −0.0061 (13) |
| O4 | 0.0357 (12) | 0.0546 (14) | 0.0658 (15) | −0.0093 (11) | 0.0279 (12) | −0.0084 (12) |
| C6 | 0.0249 (13) | 0.0304 (13) | 0.0254 (11) | −0.0025 (10) | 0.0059 (10) | −0.0004 (10) |
| C5 | 0.0304 (14) | 0.0357 (14) | 0.0305 (13) | −0.0020 (11) | 0.0098 (11) | −0.0030 (11) |
| C13 | 0.0375 (18) | 0.049 (2) | 0.062 (2) | 0.0101 (15) | 0.0032 (16) | −0.0013 (16) |
| C14 | 0.0394 (18) | 0.051 (2) | 0.058 (2) | 0.0144 (15) | 0.0181 (16) | −0.0010 (16) |
| C12 | 0.080 (3) | 0.058 (2) | 0.049 (2) | 0.000 (2) | −0.008 (2) | 0.0008 (18) |
| C1 | 0.0470 (18) | 0.0404 (17) | 0.0294 (14) | 0.0049 (14) | 0.0086 (13) | −0.0005 (12) |
| C3 | 0.065 (2) | 0.0306 (15) | 0.0484 (18) | 0.0147 (15) | 0.0148 (17) | 0.0050 (13) |
| C4 | 0.088 (4) | 0.022 (2) | 0.067 (3) | 0.000 | 0.022 (3) | 0.000 |
| C2—N1 | 1.346 (3) | N3—C14 | 1.351 (4) |
| C2—C3 | 1.390 (4) | N3—H3A | 0.92 (4) |
| C2—C1 | 1.520 (4) | N1—C2i | 1.346 (3) |
| O2—C1 | 1.243 (4) | C9—C10 | 1.403 (4) |
| O1—C1 | 1.246 (4) | C11—C10 | 1.367 (5) |
| C7—C6 | 1.382 (4) | C11—C13 | 1.407 (5) |
| C7—C8 | 1.387 (4) | C11—C12 | 1.507 (5) |
| C7—H7 | 0.9300 | C10—H10 | 0.9300 |
| C8—C7i | 1.387 (4) | O4—C5 | 1.217 (3) |
| C8—H8 | 0.9300 | C6—C5 | 1.511 (4) |
| Cu1—N2 | 1.911 (3) | C13—C14 | 1.352 (5) |
| Cu1—N1 | 1.964 (3) | C13—H13 | 0.9300 |
| Cu1—O3 | 2.029 (2) | C14—H14 | 0.9300 |
| Cu1—O3i | 2.029 (2) | C12—H12A | 0.9600 |
| N2—C6 | 1.330 (3) | C12—H12B | 0.9600 |
| N2—C6i | 1.330 (3) | C12—H12C | 0.9600 |
| N4—C9 | 1.338 (4) | C3—C4 | 1.374 (5) |
| N4—H4B | 0.89 (5) | C3—H3 | 0.9300 |
| N4—H4A | 0.85 (5) | C4—C3i | 1.374 (5) |
| O3—C5 | 1.292 (4) | C4—H4 | 0.9300 |
| N3—C9 | 1.344 (4) | ||
| N1—C2—C3 | 121.6 (3) | C10—C11—C12 | 121.8 (3) |
| N1—C2—C1 | 116.5 (3) | C13—C11—C12 | 119.3 (3) |
| C3—C2—C1 | 121.8 (3) | C11—C10—C9 | 120.5 (3) |
| C6—C7—C8 | 118.3 (3) | C11—C10—H10 | 119.7 |
| C6—C7—H7 | 120.8 | C9—C10—H10 | 119.7 |
| C8—C7—H7 | 120.8 | N2—C6—C7 | 119.8 (3) |
| C7i—C8—C7 | 120.5 (4) | N2—C6—C5 | 112.5 (2) |
| C7i—C8—H8 | 119.8 | C7—C6—C5 | 127.6 (3) |
| C7—C8—H8 | 119.8 | O4—C5—O3 | 126.4 (3) |
| N2—Cu1—N1 | 180.000 (1) | O4—C5—C6 | 120.1 (3) |
| N2—Cu1—O3 | 80.12 (6) | O3—C5—C6 | 113.5 (2) |
| N1—Cu1—O3 | 99.88 (6) | C14—C13—C11 | 119.4 (3) |
| N2—Cu1—O3i | 80.12 (6) | C14—C13—H13 | 120.3 |
| N1—Cu1—O3i | 99.88 (6) | C11—C13—H13 | 120.3 |
| O3—Cu1—O3i | 160.24 (12) | N3—C14—C13 | 120.7 (3) |
| C6—N2—C6i | 123.2 (3) | N3—C14—H14 | 119.6 |
| C6—N2—Cu1 | 118.39 (17) | C13—C14—H14 | 119.6 |
| C6i—N2—Cu1 | 118.39 (17) | C11—C12—H12A | 109.5 |
| C9—N4—H4B | 117 (3) | C11—C12—H12B | 109.5 |
| C9—N4—H4A | 116 (3) | H12A—C12—H12B | 109.5 |
| H4B—N4—H4A | 120 (4) | C11—C12—H12C | 109.5 |
| C5—O3—Cu1 | 115.23 (17) | H12A—C12—H12C | 109.5 |
| C9—N3—C14 | 122.2 (3) | H12B—C12—H12C | 109.5 |
| C9—N3—H3A | 118 (3) | O2—C1—O1 | 127.6 (3) |
| C14—N3—H3A | 120 (3) | O2—C1—C2 | 116.4 (3) |
| C2i—N1—C2 | 118.9 (4) | O1—C1—C2 | 115.9 (3) |
| C2i—N1—Cu1 | 120.56 (18) | C4—C3—C2 | 119.3 (3) |
| C2—N1—Cu1 | 120.56 (18) | C4—C3—H3 | 120.3 |
| N4—C9—N3 | 118.0 (3) | C2—C3—H3 | 120.3 |
| N4—C9—C10 | 123.8 (3) | C3i—C4—C3 | 119.2 (4) |
| N3—C9—C10 | 118.2 (3) | C3i—C4—H4 | 120.4 |
| C10—C11—C13 | 118.8 (3) | C3—C4—H4 | 120.4 |
| C6—C7—C8—C7i | −0.48 (18) | Cu1—N2—C6—C7 | 179.50 (19) |
| O3—Cu1—N2—C6 | −2.65 (14) | C6i—N2—C6—C5 | −179.4 (2) |
| O3i—Cu1—N2—C6 | 177.35 (14) | Cu1—N2—C6—C5 | 0.6 (2) |
| O3—Cu1—N2—C6i | 177.35 (14) | C8—C7—C6—N2 | 1.0 (4) |
| O3i—Cu1—N2—C6i | −2.65 (14) | C8—C7—C6—C5 | 179.7 (2) |
| N2—Cu1—O3—C5 | 4.56 (19) | Cu1—O3—C5—O4 | 176.0 (3) |
| N1—Cu1—O3—C5 | −175.44 (19) | Cu1—O3—C5—C6 | −5.4 (3) |
| O3i—Cu1—O3—C5 | 4.56 (19) | N2—C6—C5—O4 | −178.1 (2) |
| C3—C2—N1—C2i | 1.8 (2) | C7—C6—C5—O4 | 3.2 (5) |
| C1—C2—N1—C2i | −174.4 (3) | N2—C6—C5—O3 | 3.2 (3) |
| C3—C2—N1—Cu1 | −178.2 (2) | C7—C6—C5—O3 | −175.5 (3) |
| C1—C2—N1—Cu1 | 5.6 (3) | C10—C11—C13—C14 | 0.3 (5) |
| O3—Cu1—N1—C2i | −114.82 (16) | C12—C11—C13—C14 | −178.2 (4) |
| O3i—Cu1—N1—C2i | 65.18 (16) | C9—N3—C14—C13 | 1.3 (5) |
| O3—Cu1—N1—C2 | 65.18 (16) | C11—C13—C14—N3 | −0.1 (6) |
| O3i—Cu1—N1—C2 | −114.82 (16) | N1—C2—C1—O2 | −157.6 (3) |
| C14—N3—C9—N4 | 179.6 (3) | C3—C2—C1—O2 | 26.2 (5) |
| C14—N3—C9—C10 | −2.6 (5) | N1—C2—C1—O1 | 24.9 (4) |
| C13—C11—C10—C9 | −1.6 (5) | C3—C2—C1—O1 | −151.3 (3) |
| C12—C11—C10—C9 | 176.8 (3) | N1—C2—C3—C4 | −3.6 (5) |
| N4—C9—C10—C11 | −179.6 (3) | C1—C2—C3—C4 | 172.4 (3) |
| N3—C9—C10—C11 | 2.7 (5) | C2—C3—C4—C3i | 1.7 (2) |
| C6i—N2—C6—C7 | −0.50 (19) |
| H··· | ||||
| N3—H3A···O2ii | 0.92 (4) | 1.77 (4) | 2.662 (4) | 163 (4) |
| N4—H4A···O1ii | 0.85 (5) | 2.22 (5) | 3.056 (4) | 170 (4) |
| N4—H4B···O3 | 0.89 (5) | 1.97 (5) | 2.854 (4) | 176 (4) |
| C7—H7···O1iii | 0.93 | 2.58 | 3.250 (4) | 130 |
| C14—H14···O4iv | 0.93 | 2.42 | 3.160 (4) | 136 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.92 (4) | 1.77 (4) | 2.662 (4) | 163 (4) |
| N4—H4 | 0.85 (5) | 2.22 (5) | 3.056 (4) | 170 (4) |
| N4—H4 | 0.89 (5) | 1.97 (5) | 2.854 (4) | 176 (4) |
| C7—H7⋯O1ii | 0.93 | 2.58 | 3.250 (4) | 130 |
| C14—H14⋯O4iii | 0.93 | 2.42 | 3.160 (4) | 136 |
Symmetry codes: (i) ; (ii) ; (iii) .