Literature DB >> 21522859

Bis(2-amino-4-methyl-pyridinium) bis-(pyridine-2,6-dicarboxyl-ato)cuprate(II).

Hossein Aghabozorg, Azadeh Mofidi Rouchi, Behrouz Notash, Masoud Mirzaei.   

Abstract

The asymmetric unit of the title compound, (C(6)H(9)N(2))(2)[Cu(C(7)H(3)NO(4))(2)], contains half of a [Cu(pydc)(2)](2-) (pydcH(2) is pyridine-2,6-dicarb-oxy-lic acid) anion and one protonated 2-amino-4-methyl-pyridine (2a4mpH)(+) counter-ion. The anion is a six-coordinated complex with a distorted CuN(2)O(4) octa-hedral geometry around the Cu(II) ion. N-H⋯O and C-H⋯O hydrogen bonds along with π-π contacts between the pyridine rings of the (2a4mpH)(+) cations [centroid-centroid distance = 3.573 (2) Å] stabilize the crystal structure.

Entities:  

Year:  2011        PMID: 21522859      PMCID: PMC3051671          DOI: 10.1107/S1600536811001139

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to proton-transfer compounds, see: Aghabozorg et al. (2008 ▶). For related structures see: Aghabozorg et al. (2011 ▶); Eshtiagh-Hosseini, Aghabozorg et al. (2010 ▶); Eshtiagh-Hosseini, Gschwind et al. (2010 ▶); Sharif et al. (2010 ▶).

Experimental

Crystal data

(C6H9N2)2[Cu(C7H3NO4)2] M = 612.06 Monoclinic, a = 24.034 (5) Å b = 14.231 (3) Å c = 7.9780 (16) Å β = 107.01 (3)° V = 2609.3 (10) Å3 Z = 4 Mo Kα radiation μ = 0.9 mm−1 T = 298 K 0.45 × 0.15 × 0.10 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: numerical [shape of crystal determined optically (X-RED32; Stoe & Cie, 2005 ▶)] T min = 0.743, T max = 0.846 8829 measured reflections 3509 independent reflections 2785 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.119 S = 1.15 3509 reflections 201 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.30 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001139/bt5449sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001139/bt5449Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C6H9N2)2[Cu(C7H3NO4)2]F(000) = 1260
Mr = 612.06Dx = 1.558 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3509 reflections
a = 24.034 (5) Åθ = 2.9–29.2°
b = 14.231 (3) ŵ = 0.9 mm1
c = 7.9780 (16) ÅT = 298 K
β = 107.01 (3)°Needle, blue
V = 2609.3 (10) Å30.45 × 0.15 × 0.1 mm
Z = 4
Stoe IPDS II diffractometer3509 independent reflections
Radiation source: fine-focus sealed tube2785 reflections with I > 2σ(I)
graphiteRint = 0.061
Detector resolution: 0.15 mm pixels mm-1θmax = 29.2°, θmin = 2.9°
rotation method scansh = −30→32
Absorption correction: numerical [shape of crystal determined optically (X-RED32, Stoe & Cie, 2005)]k = −19→16
Tmin = 0.743, Tmax = 0.846l = −10→10
8829 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.15w = 1/[σ2(Fo2) + (0.0336P)2 + 5.0605P] where P = (Fo2 + 2Fc2)/3
3509 reflections(Δ/σ)max < 0.001
201 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.04362 (14)0.1040 (2)0.8614 (4)0.0350 (6)
O20.13708 (12)0.1246 (2)1.0589 (3)0.0592 (7)
O10.07172 (11)0.23932 (17)1.0341 (3)0.0475 (6)
C70.04400 (13)0.5659 (2)0.7068 (4)0.0338 (6)
H70.07340.59800.67700.041*
C80.00000.6143 (3)0.75000.0359 (9)
H80.00000.67960.75000.043*
Cu10.00000.29007 (3)0.75000.02835 (14)
N20.00000.4244 (2)0.75000.0266 (6)
N40.11686 (12)0.2123 (2)0.4309 (4)0.0461 (7)
O30.07121 (9)0.31454 (14)0.6690 (3)0.0370 (5)
N30.19892 (12)0.14346 (19)0.3935 (4)0.0388 (6)
N10.00000.1521 (2)0.75000.0318 (7)
C90.17056 (13)0.1785 (2)0.5020 (4)0.0345 (6)
C110.25320 (16)0.1393 (2)0.7462 (4)0.0444 (7)
C100.19805 (15)0.1743 (2)0.6831 (4)0.0420 (7)
H100.17860.19570.76080.050*
O40.12832 (10)0.43226 (18)0.6314 (3)0.0493 (6)
C60.04298 (11)0.46879 (19)0.7094 (3)0.0272 (5)
C50.08574 (12)0.4019 (2)0.6666 (4)0.0320 (6)
C130.28131 (16)0.1052 (3)0.6265 (5)0.0516 (9)
H130.31880.08080.66650.062*
C140.25339 (15)0.1082 (3)0.4529 (5)0.0485 (8)
H140.27190.08590.37340.058*
C120.2851 (2)0.1384 (3)0.9394 (5)0.0679 (12)
H12A0.30970.19270.96840.102*
H12B0.30840.08260.96750.102*
H12C0.25740.13931.00520.102*
C10.08860 (15)0.1616 (2)0.9957 (4)0.0395 (7)
C30.04539 (18)0.0064 (2)0.8605 (5)0.0485 (8)
H30.0770−0.02550.93390.058*
C40.0000−0.0425 (3)0.75000.0591 (15)
H40.0000−0.10790.75000.071*
H3A0.1810 (18)0.148 (3)0.275 (5)0.057 (11)*
H4B0.1012 (19)0.245 (3)0.501 (6)0.062 (12)*
H4A0.108 (2)0.225 (3)0.322 (7)0.074 (15)*
U11U22U33U12U13U23
C20.0432 (17)0.0305 (14)0.0316 (14)0.0044 (12)0.0116 (13)−0.0005 (11)
O20.0498 (15)0.0694 (18)0.0477 (14)0.0226 (13)−0.0024 (12)−0.0063 (12)
O10.0519 (14)0.0415 (13)0.0427 (12)0.0065 (11)0.0036 (11)−0.0087 (10)
C70.0291 (14)0.0305 (14)0.0372 (14)−0.0073 (11)0.0026 (12)0.0014 (11)
C80.033 (2)0.0240 (18)0.042 (2)0.000−0.0011 (18)0.000
Cu10.0325 (3)0.0218 (2)0.0336 (2)0.0000.01408 (19)0.000
N20.0261 (16)0.0261 (15)0.0273 (15)0.0000.0072 (13)0.000
N40.0400 (14)0.0526 (17)0.0444 (15)0.0111 (14)0.0100 (12)−0.0122 (15)
O30.0376 (11)0.0338 (11)0.0444 (11)0.0037 (9)0.0193 (10)−0.0036 (9)
N30.0367 (14)0.0414 (14)0.0378 (13)0.0074 (11)0.0102 (11)−0.0009 (11)
N10.042 (2)0.0233 (15)0.0304 (16)0.0000.0112 (15)0.000
C90.0320 (14)0.0303 (13)0.0410 (15)−0.0003 (11)0.0104 (12)−0.0066 (11)
C110.0478 (18)0.0351 (16)0.0440 (17)−0.0024 (14)0.0033 (14)−0.0012 (14)
C100.0445 (18)0.0415 (16)0.0399 (16)0.0009 (14)0.0120 (14)−0.0061 (13)
O40.0357 (12)0.0546 (14)0.0658 (15)−0.0093 (11)0.0279 (12)−0.0084 (12)
C60.0249 (13)0.0304 (13)0.0254 (11)−0.0025 (10)0.0059 (10)−0.0004 (10)
C50.0304 (14)0.0357 (14)0.0305 (13)−0.0020 (11)0.0098 (11)−0.0030 (11)
C130.0375 (18)0.049 (2)0.062 (2)0.0101 (15)0.0032 (16)−0.0013 (16)
C140.0394 (18)0.051 (2)0.058 (2)0.0144 (15)0.0181 (16)−0.0010 (16)
C120.080 (3)0.058 (2)0.049 (2)0.000 (2)−0.008 (2)0.0008 (18)
C10.0470 (18)0.0404 (17)0.0294 (14)0.0049 (14)0.0086 (13)−0.0005 (12)
C30.065 (2)0.0306 (15)0.0484 (18)0.0147 (15)0.0148 (17)0.0050 (13)
C40.088 (4)0.022 (2)0.067 (3)0.0000.022 (3)0.000
C2—N11.346 (3)N3—C141.351 (4)
C2—C31.390 (4)N3—H3A0.92 (4)
C2—C11.520 (4)N1—C2i1.346 (3)
O2—C11.243 (4)C9—C101.403 (4)
O1—C11.246 (4)C11—C101.367 (5)
C7—C61.382 (4)C11—C131.407 (5)
C7—C81.387 (4)C11—C121.507 (5)
C7—H70.9300C10—H100.9300
C8—C7i1.387 (4)O4—C51.217 (3)
C8—H80.9300C6—C51.511 (4)
Cu1—N21.911 (3)C13—C141.352 (5)
Cu1—N11.964 (3)C13—H130.9300
Cu1—O32.029 (2)C14—H140.9300
Cu1—O3i2.029 (2)C12—H12A0.9600
N2—C61.330 (3)C12—H12B0.9600
N2—C6i1.330 (3)C12—H12C0.9600
N4—C91.338 (4)C3—C41.374 (5)
N4—H4B0.89 (5)C3—H30.9300
N4—H4A0.85 (5)C4—C3i1.374 (5)
O3—C51.292 (4)C4—H40.9300
N3—C91.344 (4)
N1—C2—C3121.6 (3)C10—C11—C12121.8 (3)
N1—C2—C1116.5 (3)C13—C11—C12119.3 (3)
C3—C2—C1121.8 (3)C11—C10—C9120.5 (3)
C6—C7—C8118.3 (3)C11—C10—H10119.7
C6—C7—H7120.8C9—C10—H10119.7
C8—C7—H7120.8N2—C6—C7119.8 (3)
C7i—C8—C7120.5 (4)N2—C6—C5112.5 (2)
C7i—C8—H8119.8C7—C6—C5127.6 (3)
C7—C8—H8119.8O4—C5—O3126.4 (3)
N2—Cu1—N1180.000 (1)O4—C5—C6120.1 (3)
N2—Cu1—O380.12 (6)O3—C5—C6113.5 (2)
N1—Cu1—O399.88 (6)C14—C13—C11119.4 (3)
N2—Cu1—O3i80.12 (6)C14—C13—H13120.3
N1—Cu1—O3i99.88 (6)C11—C13—H13120.3
O3—Cu1—O3i160.24 (12)N3—C14—C13120.7 (3)
C6—N2—C6i123.2 (3)N3—C14—H14119.6
C6—N2—Cu1118.39 (17)C13—C14—H14119.6
C6i—N2—Cu1118.39 (17)C11—C12—H12A109.5
C9—N4—H4B117 (3)C11—C12—H12B109.5
C9—N4—H4A116 (3)H12A—C12—H12B109.5
H4B—N4—H4A120 (4)C11—C12—H12C109.5
C5—O3—Cu1115.23 (17)H12A—C12—H12C109.5
C9—N3—C14122.2 (3)H12B—C12—H12C109.5
C9—N3—H3A118 (3)O2—C1—O1127.6 (3)
C14—N3—H3A120 (3)O2—C1—C2116.4 (3)
C2i—N1—C2118.9 (4)O1—C1—C2115.9 (3)
C2i—N1—Cu1120.56 (18)C4—C3—C2119.3 (3)
C2—N1—Cu1120.56 (18)C4—C3—H3120.3
N4—C9—N3118.0 (3)C2—C3—H3120.3
N4—C9—C10123.8 (3)C3i—C4—C3119.2 (4)
N3—C9—C10118.2 (3)C3i—C4—H4120.4
C10—C11—C13118.8 (3)C3—C4—H4120.4
C6—C7—C8—C7i−0.48 (18)Cu1—N2—C6—C7179.50 (19)
O3—Cu1—N2—C6−2.65 (14)C6i—N2—C6—C5−179.4 (2)
O3i—Cu1—N2—C6177.35 (14)Cu1—N2—C6—C50.6 (2)
O3—Cu1—N2—C6i177.35 (14)C8—C7—C6—N21.0 (4)
O3i—Cu1—N2—C6i−2.65 (14)C8—C7—C6—C5179.7 (2)
N2—Cu1—O3—C54.56 (19)Cu1—O3—C5—O4176.0 (3)
N1—Cu1—O3—C5−175.44 (19)Cu1—O3—C5—C6−5.4 (3)
O3i—Cu1—O3—C54.56 (19)N2—C6—C5—O4−178.1 (2)
C3—C2—N1—C2i1.8 (2)C7—C6—C5—O43.2 (5)
C1—C2—N1—C2i−174.4 (3)N2—C6—C5—O33.2 (3)
C3—C2—N1—Cu1−178.2 (2)C7—C6—C5—O3−175.5 (3)
C1—C2—N1—Cu15.6 (3)C10—C11—C13—C140.3 (5)
O3—Cu1—N1—C2i−114.82 (16)C12—C11—C13—C14−178.2 (4)
O3i—Cu1—N1—C2i65.18 (16)C9—N3—C14—C131.3 (5)
O3—Cu1—N1—C265.18 (16)C11—C13—C14—N3−0.1 (6)
O3i—Cu1—N1—C2−114.82 (16)N1—C2—C1—O2−157.6 (3)
C14—N3—C9—N4179.6 (3)C3—C2—C1—O226.2 (5)
C14—N3—C9—C10−2.6 (5)N1—C2—C1—O124.9 (4)
C13—C11—C10—C9−1.6 (5)C3—C2—C1—O1−151.3 (3)
C12—C11—C10—C9176.8 (3)N1—C2—C3—C4−3.6 (5)
N4—C9—C10—C11−179.6 (3)C1—C2—C3—C4172.4 (3)
N3—C9—C10—C112.7 (5)C2—C3—C4—C3i1.7 (2)
C6i—N2—C6—C7−0.50 (19)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O2ii0.92 (4)1.77 (4)2.662 (4)163 (4)
N4—H4A···O1ii0.85 (5)2.22 (5)3.056 (4)170 (4)
N4—H4B···O30.89 (5)1.97 (5)2.854 (4)176 (4)
C7—H7···O1iii0.932.583.250 (4)130
C14—H14···O4iv0.932.423.160 (4)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯O2i0.92 (4)1.77 (4)2.662 (4)163 (4)
N4—H4A⋯O1i0.85 (5)2.22 (5)3.056 (4)170 (4)
N4—H4B⋯O30.89 (5)1.97 (5)2.854 (4)176 (4)
C7—H7⋯O1ii0.932.583.250 (4)130
C14—H14⋯O4iii0.932.423.160 (4)136

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Amino-4-methyl-pyridinium 6-carb-oxy-pyridine-2-carboxyl-ate sesquihydrate.

Authors:  Mahboubeh A Sharif; Masoumeh Tabatabaee; Mahnaz Adinehloo; Hossein Aghabozorg
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-20

3.  2-Amino-4-methyl-pyridinium 6-carb-oxy-pyridine-2-carboxyl-ate methanol monosolvate.

Authors:  Hossein Aghabozorg; Azadeh Mofidi Rouchi; Masoud Mirzaei; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-08

4.  Bis(2-amino-4-methyl-pyridinium) trans-diaqua-bis-(pyrazine-2,3-dicarboxyl-ato)cuprate(II) hexa-hydrate.

Authors:  Hossein Eshtiagh-Hosseini; Fabienne Gschwind; Nafiseh Alfi; Masoud Mirzaei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23
  4 in total

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