Literature DB >> 21589276

(meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-ne)copper(II) bis-[O,O'-(o-phenyl-ene)dithio-phosphate].

Jian-Shen Feng1, Li-Ke Zou, Bin Xie, Yang-Guang Xiang, Chuan Lai.   

Abstract

In the title compound, [Cu(C(16)H(36)N(4))](C(6)H(4)O(2)PS(2))(2), the Cu(II) cation lies on an inversion center and is chelated by the macrocyclic tetra-amine ligand in a slightly distorted CuN(4) square-planar geometry. The axial positions are occupied by two O,O'-(o-phenyl-ene)dithio-phosphate anions with long Cu⋯S distances of 3.0940 (7) Å. Inter-molecular N-H⋯S and C-H⋯O hydrogen bonding is present between the anions and the cation and helps to stabilize the crystal structure.

Entities:  

Year:  2010        PMID: 21589276      PMCID: PMC3011723          DOI: 10.1107/S1600536810046684

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of macrocyclic tetra­amine compounds, see: Groeta et al. (2000 ▶); Aoki & Kimura (2002 ▶). For related structures, see: Feng et al. (2009 ▶); He et al. (2010 ▶); Xie et al. (2009 ▶).

Experimental

Crystal data

[Cu(C16H36N4)](C6H4O2PS2)2 M = 754.39 Monoclinic, a = 12.3107 (4) Å b = 12.1612 (3) Å c = 12.3703 (4) Å β = 107.136 (3)° V = 1769.78 (9) Å3 Z = 2 Mo Kα radiation μ = 0.98 mm−1 T = 294 K 0.38 × 0.34 × 0.28 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO RED; Oxford Diffraction, 2009 ▶) T min = 0.697, T max = 0.761 7203 measured reflections 3621 independent reflections 2662 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.072 S = 1.02 3621 reflections 199 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrysAlis PRO CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO CCD; data reduction: CrysAlis PRO RED (Oxford Diffraction, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810046684/xu5086sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046684/xu5086Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C16H36N4)](C6H4O2PS2)2F(000) = 790
Mr = 754.39Dx = 1.416 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ybcCell parameters from 4041 reflections
a = 12.3107 (4) Åθ = 3.2–29.2°
b = 12.1612 (3) ŵ = 0.98 mm1
c = 12.3703 (4) ÅT = 294 K
β = 107.136 (3)°Block, dark-violet
V = 1769.78 (9) Å30.38 × 0.34 × 0.28 mm
Z = 2
Oxford Diffraction Xcalibur Eos diffractometer3621 independent reflections
Radiation source: fine-focus sealed tube2662 reflections with I > 2σ(I)
graphiteRint = 0.018
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 3.3°
ω scansh = −14→15
Absorption correction: multi-scan (CrysAlis PRO RED; Oxford Diffraction, 2009)k = −15→14
Tmin = 0.697, Tmax = 0.761l = −15→8
7203 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.072H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0358P)2] where P = (Fo2 + 2Fc2)/3
3621 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.60607 (18)0.32263 (15)0.63651 (17)0.0421 (5)
H1A0.64600.25300.64380.050*
H1B0.55730.32100.68540.050*
C60.5147 (2)0.85983 (17)0.5043 (2)0.0750 (9)
H6B0.45880.87090.54340.113*
H6A0.48100.87340.42500.113*
H6C0.57700.90960.53360.113*
C30.69922 (17)0.62275 (15)0.67689 (17)0.0385 (5)
C40.62020 (18)0.72195 (15)0.64523 (18)0.0448 (5)
H4A0.56360.71540.68530.054*
H4B0.66470.78720.67390.054*
C20.69001 (16)0.41537 (15)0.67066 (18)0.0417 (5)
H2B0.73150.40940.75030.050*
H2A0.74410.41220.62750.050*
C50.55801 (18)0.74158 (14)0.52163 (18)0.0412 (5)
H50.61160.73050.47770.049*
C80.7587 (2)0.62675 (19)0.80430 (19)0.0669 (7)
H8A0.70310.62140.84450.100*
H8C0.79930.69490.82310.100*
H8B0.81110.56650.82530.100*
C70.78770 (19)0.62258 (17)0.6133 (2)0.0589 (7)
H7B0.84420.56770.64490.088*
H7C0.82320.69360.61980.088*
H7A0.75160.60630.53490.088*
P10.76165 (4)0.41284 (4)0.34491 (4)0.03621 (14)
S10.62560 (5)0.50447 (5)0.31713 (5)0.05140 (17)
S20.77079 (5)0.27519 (4)0.42553 (5)0.04891 (16)
O10.79072 (12)0.39508 (11)0.22398 (12)0.0475 (4)
O20.87362 (11)0.49007 (10)0.40083 (12)0.0452 (4)
C90.91021 (16)0.53308 (17)0.31328 (19)0.0411 (5)
N10.53721 (13)0.33932 (11)0.51843 (12)0.0309 (4)
H10.58490.32630.47590.037*
C100.98455 (17)0.61848 (17)0.3208 (2)0.0554 (6)
H101.01620.65540.38860.067*
C130.8889 (2)0.50583 (19)0.1159 (2)0.0611 (7)
H130.85720.46850.04830.073*
C140.86346 (18)0.47825 (17)0.21245 (19)0.0438 (5)
Cu10.50000.50000.50000.03160 (11)
N20.62678 (12)0.52077 (11)0.64861 (13)0.0315 (4)
H20.58860.52110.70140.038*
C111.0108 (2)0.6478 (2)0.2226 (3)0.0656 (8)
H111.06050.70580.22460.079*
C120.9647 (2)0.5925 (2)0.1231 (3)0.0713 (8)
H120.98440.61330.05900.086*
U11U22U33U12U13U23
C10.0483 (13)0.0289 (10)0.0428 (12)0.0079 (9)0.0039 (10)0.0100 (9)
C60.095 (2)0.0260 (11)0.086 (2)−0.0022 (12)−0.0002 (17)0.0049 (12)
C30.0387 (11)0.0351 (11)0.0366 (12)−0.0048 (9)0.0034 (9)−0.0070 (9)
C40.0538 (14)0.0319 (11)0.0451 (13)−0.0057 (10)0.0093 (11)−0.0101 (10)
C20.0377 (11)0.0350 (11)0.0446 (13)0.0084 (10)−0.0001 (10)0.0061 (9)
C50.0477 (13)0.0242 (10)0.0493 (14)−0.0043 (9)0.0107 (11)0.0009 (9)
C80.0761 (18)0.0619 (15)0.0461 (15)−0.0064 (14)−0.0075 (13)−0.0119 (12)
C70.0427 (13)0.0543 (14)0.0793 (19)−0.0091 (11)0.0173 (13)−0.0009 (13)
P10.0333 (3)0.0453 (3)0.0317 (3)−0.0046 (2)0.0121 (2)−0.0077 (2)
S10.0385 (3)0.0599 (4)0.0593 (4)0.0075 (3)0.0198 (3)0.0164 (3)
S20.0556 (4)0.0443 (3)0.0498 (4)0.0056 (3)0.0203 (3)−0.0009 (3)
O10.0522 (9)0.0577 (9)0.0393 (9)−0.0202 (8)0.0239 (7)−0.0174 (7)
O20.0381 (8)0.0580 (9)0.0381 (8)−0.0114 (7)0.0092 (7)−0.0122 (7)
C90.0276 (11)0.0434 (12)0.0522 (14)−0.0006 (9)0.0116 (10)0.0005 (10)
N10.0352 (8)0.0224 (8)0.0354 (9)0.0057 (7)0.0107 (7)0.0047 (7)
C100.0321 (12)0.0496 (13)0.0775 (19)−0.0012 (10)0.0050 (12)0.0001 (13)
C130.0662 (16)0.0712 (17)0.0568 (16)−0.0033 (14)0.0352 (14)−0.0009 (13)
C140.0371 (12)0.0526 (14)0.0468 (14)−0.0015 (10)0.0201 (10)−0.0047 (10)
Cu10.03122 (18)0.02070 (16)0.0368 (2)0.00205 (14)0.00057 (14)0.00432 (14)
N20.0308 (9)0.0325 (9)0.0305 (9)0.0028 (7)0.0080 (7)0.0025 (7)
C110.0361 (13)0.0555 (15)0.109 (2)0.0023 (12)0.0270 (15)0.0229 (16)
C120.0622 (17)0.0794 (19)0.087 (2)0.0072 (15)0.0440 (17)0.0226 (16)
C1—H1A0.9700C7—H7A0.9600
C1—H1B0.9700P1—S11.9560 (7)
C1—C21.504 (3)P1—S21.9348 (8)
C1—N11.471 (2)P1—O11.6517 (14)
C6—H6B0.9600P1—O21.6429 (14)
C6—H6A0.9600O1—C141.386 (2)
C6—H6C0.9600O2—C91.392 (2)
C6—C51.527 (3)C9—C101.369 (3)
C3—C41.527 (3)C9—C141.382 (3)
C3—C81.531 (3)N1—C5i1.499 (2)
C3—C71.520 (3)N1—H10.9100
C3—N21.507 (2)N1—Cu12.0047 (13)
C4—H4A0.9700C10—H100.9300
C4—H4B0.9700C10—C111.391 (3)
C4—C51.514 (3)C13—H130.9300
C2—H2B0.9700C13—C141.363 (3)
C2—H2A0.9700C13—C121.393 (3)
C2—N21.483 (2)Cu1—N1i2.0047 (13)
C5—H50.9800Cu1—N22.0466 (15)
C5—N1i1.498 (2)Cu1—N2i2.0466 (15)
C8—H8A0.9600N2—H20.9100
C8—H8C0.9600C11—H110.9300
C8—H8B0.9600C11—C121.370 (4)
C7—H7B0.9600C12—H120.9300
C7—H7C0.9600
C1—C2—H2B110.0S2—P1—S1120.01 (4)
C1—C2—H2A110.0O1—P1—S1108.55 (6)
C1—N1—C5i113.81 (14)O1—P1—S2111.01 (6)
C1—N1—H1105.6O2—P1—S1108.48 (5)
C1—N1—Cu1107.04 (11)O2—P1—S2111.31 (6)
H1A—C1—H1B108.3O2—P1—O194.43 (7)
C6—C5—H5108.4C9—O2—P1108.12 (12)
H6B—C6—H6A109.5C9—C10—H10121.4
H6B—C6—H6C109.5C9—C10—C11117.2 (2)
H6A—C6—H6C109.5C9—C14—O1111.67 (19)
C3—C4—H4A107.7N1—C1—H1A109.9
C3—C4—H4B107.7N1—C1—H1B109.9
C3—C8—H8A109.5N1—C1—C2108.83 (15)
C3—C8—H8C109.5N1i—C5—C6111.41 (17)
C3—C8—H8B109.5N1i—C5—C4110.13 (15)
C3—C7—H7B109.5N1i—C5—H5108.4
C3—C7—H7C109.5N1—Cu1—N1i180.0
C3—C7—H7A109.5N1i—Cu1—N2i85.98 (6)
C3—N2—Cu1123.54 (11)N1—Cu1—N2i94.02 (6)
C3—N2—H2103.1N1—Cu1—N285.98 (6)
C4—C3—C8108.33 (17)N1i—Cu1—N294.02 (6)
C4—C5—C6110.00 (17)C10—C9—O2126.6 (2)
C4—C5—H5108.4C10—C9—C14121.3 (2)
H4A—C4—H4B107.1C10—C11—H11119.4
C2—C1—H1A109.9C13—C14—O1126.3 (2)
C2—C1—H1B109.9C13—C14—C9122.0 (2)
C2—N2—C3115.21 (15)C13—C12—H12119.3
C2—N2—Cu1106.18 (11)C14—O1—P1108.47 (12)
C2—N2—H2103.1C14—C9—O2112.15 (18)
H2B—C2—H2A108.4C14—C13—H13121.5
C5—C6—H6B109.5C14—C13—C12116.9 (2)
C5—C6—H6A109.5Cu1—N1—H1105.6
C5—C6—H6C109.5Cu1—N2—H2103.1
C5—C4—C3118.56 (17)N2—C3—C4107.57 (15)
C5—C4—H4A107.7N2—C3—C8109.63 (16)
C5—C4—H4B107.7N2—C3—C7110.12 (16)
C5i—N1—H1105.6N2—C2—C1108.46 (15)
C5i—N1—Cu1118.17 (12)N2—C2—H2B110.0
H8A—C8—H8C109.5N2—C2—H2A110.0
H8A—C8—H8B109.5N2—Cu1—N2i180.0
H8C—C8—H8B109.5C11—C10—H10121.4
C7—C3—C4111.59 (18)C11—C12—C13121.4 (3)
C7—C3—C8109.55 (19)C11—C12—H12119.3
H7B—C7—H7C109.5C12—C13—H13121.5
H7B—C7—H7A109.5C12—C11—C10121.1 (2)
H7C—C7—H7A109.5C12—C11—H11119.4
C1—C2—N2—C3−179.14 (16)S1—P1—O2—C9−90.46 (12)
C1—C2—N2—Cu1−38.57 (18)S2—P1—O1—C14−135.33 (12)
C1—N1—Cu1—N215.68 (13)S2—P1—O2—C9135.39 (11)
C1—N1—Cu1—N2i−164.32 (13)O1—P1—O2—C920.78 (13)
C3—C4—C5—C6−162.4 (2)O2—P1—O1—C14−20.48 (14)
C3—C4—C5—N1i74.4 (2)O2—C9—C10—C11179.29 (18)
C4—C3—N2—C2178.22 (16)O2—C9—C14—O10.8 (3)
C4—C3—N2—Cu145.3 (2)O2—C9—C14—C13−179.1 (2)
C2—C1—N1—C5i−173.86 (16)C9—C10—C11—C12−0.6 (3)
C2—C1—N1—Cu1−41.42 (18)N1—C1—C2—N254.5 (2)
C5i—N1—Cu1—N2145.70 (14)N1—Cu1—N2—C3149.25 (14)
C5i—N1—Cu1—N2i−34.30 (14)N1i—Cu1—N2—C3−30.75 (14)
C8—C3—C4—C5175.34 (19)N1i—Cu1—N2—C2−167.17 (12)
C8—C3—N2—C2−64.2 (2)N1—Cu1—N2—C212.83 (12)
C8—C3—N2—Cu1162.85 (14)C10—C9—C14—O1−179.94 (17)
C7—C3—C4—C554.7 (2)C10—C9—C14—C130.2 (3)
C7—C3—N2—C256.4 (2)C10—C11—C12—C130.7 (4)
C7—C3—N2—Cu1−76.55 (19)C14—C9—C10—C110.1 (3)
P1—O1—C14—C914.3 (2)C14—C13—C12—C11−0.4 (4)
P1—O1—C14—C13−165.8 (2)N2—C3—C4—C5−66.2 (2)
P1—O2—C9—C10165.19 (17)C12—C13—C14—O1−179.9 (2)
P1—O2—C9—C14−15.6 (2)C12—C13—C14—C9−0.1 (3)
S1—P1—O1—C1490.71 (13)
D—H···AD—HH···AD···AD—H···A
N1—H1···S20.912.623.4849 (16)160
N2—H2···S1i0.912.603.2715 (16)132
C1—H1A···O1ii0.972.523.449 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S20.912.623.4849 (16)160
N2—H2⋯S1i0.912.603.2715 (16)132
C1—H1A⋯O1ii0.972.523.449 (2)160

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (meso-5,7,7,12,14,14-Hexamethyl-1,4,8,11-tetra-azacyclo-tetra-deca-4,11-diene)nickel(II) bis-[O,O'-bis(4-methyl-phen-yl) dithio-phosphate].

Authors:  Bin Xie; Yang-Guang Xiang; Li-Ke Zou; Xiu-Li Chang; Chang-You Ji
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

3.  (meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-azacyclo-tetra-deca-ne)copper(II) bis-(O,S-dibenzyl dithio-phosphate).

Authors:  Jian-Shen Feng; Li-Ke Zou; Bin Xie; Yu Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

Review 4.  Recent progress in artificial receptors for phosphate anions in aqueous solution.

Authors:  Shin Aoki; Eiichi Kimura
Journal:  J Biotechnol       Date:  2002-04       Impact factor: 3.307

5.  (meso-5,7,7,12,14,14-Hexamethyl-1,4,8,11-tetra-azacyclo-tetra-deca-4,11-diene)copper(II) bis-[O,O'-bis-(4-methyl-phen-yl) dithio-phosphate].

Authors:  Lin-Xin He; Li-Ke Zou; Bin Xie; Yang-Guang Xiang; Jian-Shen Feng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-20
  5 in total
  3 in total

1.  (meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-ne)nickel(II) bis-[O,O'-bis-(4-methyl-phen-yl) thio-phosphate].

Authors:  Yang-Guang Xiang; Bin Xie; Li-Ke Zou; Jian-Shen Feng; Chuan Lai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11

2.  (5,7,7,12,14,14-Hexamethyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-4,11-diene)nickel(II) bis-[O,O'-bis-(4-tert-butyl-phen-yl) dithio-phosphate].

Authors:  Chuan Lai; Bin Xie; Li-Ke Zou; Jian-Shen Feng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-04

3.  (meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-ne)nickel(II) bis-[O,O'-(1,2-phenyl-ene) dithio-phosphate].

Authors:  Li-Ke Zou; Yan Lu; Jie Cheng; Xi-Yang He; Bin Xie
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30
  3 in total

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