| Literature DB >> 21577390 |
Jian-Shen Feng1, Li-Ke Zou, Bin Xie, Yu Wu.
Abstract
In the crystal structure of the title compound, [Cu(C(16)H(36)N(4))](C(14)H(14)O(2)PS(2))(2), the Cu(II) atom is located on an inversion center and is chelated by four N atoms of the macrocyclic meso-5,5,7,12,12,14- hexa-methyl-1,4,8,11-tetra-azacyclo-tetra-decane ligand in a square-planar geometry, with Cu-N distances of 2.013 (3) and 2.014 (3) Å. In the crystal structure, one O,S-dibenzyl dithio-phosphate counter-anion links with the Cu(II) complex cation through N-H⋯O and N-H⋯S hydrogen bonding. During the synthesis, the structure of the anion re-arranged from O,O'-dibenzyl dithio-phosphate in the starting material to O,S-dibenzyl dithio-phosphate in the title compound.Entities:
Year: 2009 PMID: 21577390 PMCID: PMC2969959 DOI: 10.1107/S1600536809030037
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C16H36N4)](C14H14O2PS2)2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 29 reflections |
| θ = 4.4–11.5° | |
| µ = 0.75 mm−1 | |
| β = 99.78 (2)° | Block, dark-violet |
| 0.44 × 0.40 × 0.35 mm | |
| Enraf–Nonius CAD-4 diffractometer | 2900 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.6°, θmin = 1.8° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 4797 measured reflections | 3 standard reflections every 300 reflections |
| 4420 independent reflections | intensity decay: 6.7% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4420 reflections | (Δ/σ)max < 0.001 |
| 275 parameters | Δρmax = 0.45 e Å−3 |
| 0 restraints | Δρmin = −0.69 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.5000 | 0.0000 | 0.5000 | 0.0373 (2) | |
| S1 | 0.45680 (10) | 0.16085 (8) | 0.65146 (9) | 0.0633 (3) | |
| S2 | 0.60091 (9) | 0.16270 (6) | 0.90486 (8) | 0.0523 (3) | |
| P1 | 0.46223 (8) | 0.11046 (6) | 0.79879 (8) | 0.0426 (3) | |
| O1 | 0.3474 (2) | 0.12698 (17) | 0.8538 (2) | 0.0550 (7) | |
| O2 | 0.4729 (3) | 0.02701 (17) | 0.8069 (3) | 0.0610 (8) | |
| N1 | 0.6456 (2) | 0.06574 (17) | 0.5164 (2) | 0.0376 (7) | |
| H1 | 0.6323 | 0.1022 | 0.5669 | 0.045* | |
| N2 | 0.4441 (2) | 0.05885 (17) | 0.3564 (2) | 0.0369 (7) | |
| H2 | 0.4682 | 0.0312 | 0.3002 | 0.044* | |
| C1 | 0.6406 (3) | 0.1077 (2) | 0.4085 (3) | 0.0475 (9) | |
| H1A | 0.6712 | 0.0762 | 0.3535 | 0.057* | |
| H1B | 0.6886 | 0.1533 | 0.4211 | 0.057* | |
| C2 | 0.5149 (3) | 0.1285 (2) | 0.3647 (3) | 0.0431 (9) | |
| H2A | 0.4867 | 0.1642 | 0.4159 | 0.052* | |
| H2B | 0.5086 | 0.1522 | 0.2906 | 0.052* | |
| C3 | 0.3165 (3) | 0.0731 (2) | 0.3165 (3) | 0.0444 (9) | |
| H3 | 0.2894 | 0.1101 | 0.3679 | 0.053* | |
| C4 | 0.2455 (3) | 0.0014 (2) | 0.3192 (3) | 0.0480 (9) | |
| H4A | 0.2786 | −0.0366 | 0.2747 | 0.058* | |
| H4B | 0.1658 | 0.0117 | 0.2804 | 0.058* | |
| C5 | 0.2935 (4) | 0.1062 (3) | 0.1966 (4) | 0.0708 (14) | |
| H5A | 0.3397 | 0.1514 | 0.1943 | 0.106* | |
| H5B | 0.2111 | 0.1183 | 0.1757 | 0.106* | |
| H5C | 0.3152 | 0.0695 | 0.1442 | 0.106* | |
| C6 | 0.7638 (3) | 0.0344 (2) | 0.5661 (3) | 0.0415 (8) | |
| C7 | 0.8558 (4) | 0.0984 (3) | 0.5855 (4) | 0.0667 (13) | |
| H7A | 0.8587 | 0.1237 | 0.5149 | 0.100* | |
| H7B | 0.9321 | 0.0773 | 0.6147 | 0.100* | |
| H7C | 0.8343 | 0.1342 | 0.6392 | 0.100* | |
| C8 | 0.8018 (4) | −0.0231 (2) | 0.4853 (4) | 0.0546 (10) | |
| H8A | 0.7366 | −0.0559 | 0.4572 | 0.082* | |
| H8B | 0.8662 | −0.0528 | 0.5246 | 0.082* | |
| H8C | 0.8268 | 0.0029 | 0.4228 | 0.082* | |
| C9 | 0.3028 (5) | 0.2003 (3) | 0.8600 (5) | 0.0731 (14) | |
| H9A | 0.2887 | 0.2232 | 0.7851 | 0.088* | |
| H9B | 0.3597 | 0.2314 | 0.9092 | 0.088* | |
| C10 | 0.1885 (3) | 0.1965 (2) | 0.9066 (3) | 0.0476 (9) | |
| C11 | 0.1010 (5) | 0.1453 (3) | 0.8683 (4) | 0.0669 (12) | |
| H11 | 0.1119 | 0.1113 | 0.8114 | 0.080* | |
| C12 | −0.0002 (4) | 0.1428 (3) | 0.9107 (5) | 0.0750 (14) | |
| H12 | −0.0577 | 0.1070 | 0.8832 | 0.090* | |
| C13 | −0.0188 (4) | 0.1915 (3) | 0.9925 (4) | 0.0703 (14) | |
| H13 | −0.0894 | 0.1895 | 1.0208 | 0.084* | |
| C14 | 0.0652 (5) | 0.2437 (3) | 1.0342 (4) | 0.0700 (14) | |
| H14 | 0.0530 | 0.2772 | 1.0914 | 0.084* | |
| C15 | 0.1705 (4) | 0.2460 (2) | 0.9893 (4) | 0.0579 (11) | |
| H15 | 0.2284 | 0.2817 | 1.0163 | 0.070* | |
| C16 | 0.5930 (4) | 0.1139 (3) | 1.0376 (3) | 0.0676 (14) | |
| H16A | 0.5285 | 0.1346 | 1.0710 | 0.081* | |
| H16B | 0.5778 | 0.0603 | 1.0230 | 0.081* | |
| C17 | 0.7064 (3) | 0.1235 (3) | 1.1178 (3) | 0.0492 (10) | |
| C18 | 0.7318 (4) | 0.1904 (3) | 1.1759 (4) | 0.0618 (12) | |
| H18 | 0.6778 | 0.2303 | 1.1655 | 0.074* | |
| C19 | 0.8376 (6) | 0.1983 (3) | 1.2498 (4) | 0.0812 (17) | |
| H19 | 0.8536 | 0.2437 | 1.2893 | 0.097* | |
| C20 | 0.9167 (5) | 0.1428 (4) | 1.2658 (4) | 0.0847 (18) | |
| H20 | 0.9882 | 0.1496 | 1.3145 | 0.102* | |
| C21 | 0.8919 (5) | 0.0752 (3) | 1.2098 (5) | 0.0809 (16) | |
| H21 | 0.9456 | 0.0352 | 1.2222 | 0.097* | |
| C22 | 0.7873 (4) | 0.0666 (3) | 1.1349 (4) | 0.0663 (12) | |
| H22 | 0.7718 | 0.0211 | 1.0955 | 0.080* |
| Cu1 | 0.0326 (3) | 0.0406 (4) | 0.0394 (3) | 0.0051 (3) | 0.0081 (2) | 0.0141 (3) |
| S1 | 0.0623 (7) | 0.0895 (9) | 0.0385 (5) | 0.0165 (6) | 0.0100 (5) | 0.0071 (5) |
| S2 | 0.0512 (6) | 0.0614 (7) | 0.0420 (5) | −0.0119 (5) | 0.0015 (4) | 0.0061 (5) |
| P1 | 0.0407 (5) | 0.0505 (6) | 0.0381 (5) | 0.0035 (4) | 0.0110 (4) | −0.0066 (4) |
| O1 | 0.0499 (16) | 0.0567 (18) | 0.0628 (17) | 0.0093 (14) | 0.0223 (13) | −0.0028 (14) |
| O2 | 0.083 (2) | 0.0394 (16) | 0.0649 (18) | 0.0009 (15) | 0.0241 (16) | −0.0094 (14) |
| N1 | 0.0390 (15) | 0.0383 (17) | 0.0360 (15) | 0.0010 (13) | 0.0080 (12) | 0.0041 (13) |
| N2 | 0.0401 (15) | 0.0398 (17) | 0.0317 (14) | 0.0087 (13) | 0.0085 (12) | 0.0053 (13) |
| C1 | 0.051 (2) | 0.049 (2) | 0.044 (2) | −0.0070 (18) | 0.0104 (17) | 0.0137 (17) |
| C2 | 0.054 (2) | 0.034 (2) | 0.0422 (19) | 0.0028 (17) | 0.0115 (16) | 0.0112 (16) |
| C3 | 0.040 (2) | 0.045 (2) | 0.047 (2) | 0.0107 (17) | 0.0050 (16) | 0.0115 (17) |
| C4 | 0.041 (2) | 0.056 (2) | 0.045 (2) | 0.0057 (18) | −0.0001 (16) | 0.0022 (18) |
| C5 | 0.060 (3) | 0.088 (4) | 0.059 (3) | 0.010 (3) | −0.003 (2) | 0.036 (3) |
| C6 | 0.0346 (18) | 0.043 (2) | 0.046 (2) | −0.0012 (16) | 0.0029 (15) | 0.0039 (17) |
| C7 | 0.052 (3) | 0.067 (3) | 0.075 (3) | −0.019 (2) | −0.004 (2) | 0.010 (2) |
| C8 | 0.053 (2) | 0.058 (3) | 0.055 (2) | 0.011 (2) | 0.0157 (19) | 0.006 (2) |
| C9 | 0.077 (3) | 0.051 (3) | 0.100 (4) | 0.000 (2) | 0.041 (3) | 0.006 (3) |
| C10 | 0.040 (2) | 0.050 (2) | 0.056 (2) | 0.0059 (18) | 0.0167 (17) | 0.0112 (19) |
| C11 | 0.084 (3) | 0.055 (3) | 0.064 (3) | 0.006 (3) | 0.015 (2) | −0.004 (2) |
| C12 | 0.056 (3) | 0.080 (4) | 0.087 (4) | −0.015 (3) | 0.007 (3) | 0.006 (3) |
| C13 | 0.051 (3) | 0.096 (4) | 0.068 (3) | 0.015 (3) | 0.019 (2) | 0.028 (3) |
| C14 | 0.081 (3) | 0.082 (4) | 0.049 (2) | 0.035 (3) | 0.015 (2) | 0.003 (2) |
| C15 | 0.057 (3) | 0.050 (3) | 0.062 (3) | 0.002 (2) | −0.003 (2) | 0.001 (2) |
| C16 | 0.055 (3) | 0.102 (4) | 0.045 (2) | −0.023 (3) | 0.0031 (19) | 0.018 (2) |
| C17 | 0.046 (2) | 0.063 (3) | 0.039 (2) | −0.013 (2) | 0.0062 (16) | 0.0060 (19) |
| C18 | 0.074 (3) | 0.066 (3) | 0.048 (2) | −0.006 (2) | 0.018 (2) | 0.005 (2) |
| C19 | 0.114 (5) | 0.084 (4) | 0.044 (3) | −0.044 (4) | 0.008 (3) | −0.004 (3) |
| C20 | 0.070 (3) | 0.113 (5) | 0.061 (3) | −0.036 (3) | −0.016 (3) | 0.023 (3) |
| C21 | 0.059 (3) | 0.093 (4) | 0.085 (4) | 0.012 (3) | −0.004 (3) | 0.029 (3) |
| C22 | 0.072 (3) | 0.055 (3) | 0.070 (3) | −0.010 (2) | 0.008 (2) | 0.004 (2) |
| Cu1—N2i | 2.013 (3) | C7—H7B | 0.9600 |
| Cu1—N2 | 2.013 (3) | C7—H7C | 0.9600 |
| Cu1—N1i | 2.014 (3) | C8—H8A | 0.9600 |
| Cu1—N1 | 2.014 (3) | C8—H8B | 0.9600 |
| S1—P1 | 1.9619 (15) | C8—H8C | 0.9600 |
| S2—C16 | 1.818 (4) | C9—C10 | 1.510 (6) |
| S2—P1 | 2.0729 (15) | C9—H9A | 0.9700 |
| P1—O2 | 1.475 (3) | C9—H9B | 0.9700 |
| P1—O1 | 1.596 (3) | C10—C15 | 1.359 (6) |
| O1—C9 | 1.394 (5) | C10—C11 | 1.368 (6) |
| N1—C1 | 1.478 (4) | C11—C12 | 1.344 (7) |
| N1—C6 | 1.491 (4) | C11—H11 | 0.9300 |
| N1—H1 | 0.9100 | C12—C13 | 1.343 (7) |
| N2—C2 | 1.465 (5) | C12—H12 | 0.9300 |
| N2—C3 | 1.482 (4) | C13—C14 | 1.364 (7) |
| N2—H2 | 0.9100 | C13—H13 | 0.9300 |
| C1—C2 | 1.493 (5) | C14—C15 | 1.404 (7) |
| C1—H1A | 0.9700 | C14—H14 | 0.9300 |
| C1—H1B | 0.9700 | C15—H15 | 0.9300 |
| C2—H2A | 0.9700 | C16—C17 | 1.489 (5) |
| C2—H2B | 0.9700 | C16—H16A | 0.9700 |
| C3—C4 | 1.506 (5) | C16—H16B | 0.9700 |
| C3—C5 | 1.527 (5) | C17—C22 | 1.356 (6) |
| C3—H3 | 0.9800 | C17—C18 | 1.372 (6) |
| C4—C6i | 1.528 (5) | C18—C19 | 1.382 (7) |
| C4—H4A | 0.9700 | C18—H18 | 0.9300 |
| C4—H4B | 0.9700 | C19—C20 | 1.325 (8) |
| C5—H5A | 0.9600 | C19—H19 | 0.9300 |
| C5—H5B | 0.9600 | C20—C21 | 1.370 (8) |
| C5—H5C | 0.9600 | C20—H20 | 0.9300 |
| C6—C8 | 1.513 (5) | C21—C22 | 1.379 (7) |
| C6—C4i | 1.528 (5) | C21—H21 | 0.9300 |
| C6—C7 | 1.533 (5) | C22—H22 | 0.9300 |
| C7—H7A | 0.9600 | ||
| N2i—Cu1—N2 | 180.0 | C4i—C6—C7 | 108.6 (3) |
| N2i—Cu1—N1i | 85.80 (11) | C6—C7—H7A | 109.5 |
| N2—Cu1—N1i | 94.20 (12) | C6—C7—H7B | 109.5 |
| N2i—Cu1—N1 | 94.20 (12) | H7A—C7—H7B | 109.5 |
| N2—Cu1—N1 | 85.80 (11) | C6—C7—H7C | 109.5 |
| N1i—Cu1—N1 | 180.0 | H7A—C7—H7C | 109.5 |
| C16—S2—P1 | 100.18 (15) | H7B—C7—H7C | 109.5 |
| O2—P1—O1 | 102.66 (17) | C6—C8—H8A | 109.5 |
| O2—P1—S1 | 119.89 (13) | C6—C8—H8B | 109.5 |
| O1—P1—S1 | 112.60 (12) | H8A—C8—H8B | 109.5 |
| O2—P1—S2 | 110.77 (14) | C6—C8—H8C | 109.5 |
| O1—P1—S2 | 105.65 (12) | H8A—C8—H8C | 109.5 |
| S1—P1—S2 | 104.60 (7) | H8B—C8—H8C | 109.5 |
| C9—O1—P1 | 121.8 (3) | O1—C9—C10 | 109.2 (4) |
| C1—N1—C6 | 115.4 (3) | O1—C9—H9A | 109.8 |
| C1—N1—Cu1 | 107.0 (2) | C10—C9—H9A | 109.8 |
| C6—N1—Cu1 | 120.7 (2) | O1—C9—H9B | 109.8 |
| C1—N1—H1 | 103.9 | C10—C9—H9B | 109.8 |
| C6—N1—H1 | 103.9 | H9A—C9—H9B | 108.3 |
| Cu1—N1—H1 | 103.9 | C15—C10—C11 | 118.1 (4) |
| C2—N2—C3 | 112.7 (3) | C15—C10—C9 | 119.2 (4) |
| C2—N2—Cu1 | 106.3 (2) | C11—C10—C9 | 122.6 (4) |
| C3—N2—Cu1 | 121.0 (2) | C12—C11—C10 | 121.9 (5) |
| C2—N2—H2 | 105.2 | C12—C11—H11 | 119.1 |
| C3—N2—H2 | 105.2 | C10—C11—H11 | 119.1 |
| Cu1—N2—H2 | 105.2 | C13—C12—C11 | 120.5 (5) |
| N1—C1—C2 | 108.7 (3) | C13—C12—H12 | 119.8 |
| N1—C1—H1A | 110.0 | C11—C12—H12 | 119.8 |
| C2—C1—H1A | 110.0 | C12—C13—C14 | 120.4 (4) |
| N1—C1—H1B | 110.0 | C12—C13—H13 | 119.8 |
| C2—C1—H1B | 110.0 | C14—C13—H13 | 119.8 |
| H1A—C1—H1B | 108.3 | C13—C14—C15 | 118.7 (4) |
| N2—C2—C1 | 108.1 (3) | C13—C14—H14 | 120.7 |
| N2—C2—H2A | 110.1 | C15—C14—H14 | 120.7 |
| C1—C2—H2A | 110.1 | C10—C15—C14 | 120.4 (4) |
| N2—C2—H2B | 110.1 | C10—C15—H15 | 119.8 |
| C1—C2—H2B | 110.1 | C14—C15—H15 | 119.8 |
| H2A—C2—H2B | 108.4 | C17—C16—S2 | 109.9 (3) |
| N2—C3—C4 | 111.1 (3) | C17—C16—H16A | 109.7 |
| N2—C3—C5 | 111.7 (3) | S2—C16—H16A | 109.7 |
| C4—C3—C5 | 109.3 (3) | C17—C16—H16B | 109.7 |
| N2—C3—H3 | 108.2 | S2—C16—H16B | 109.7 |
| C4—C3—H3 | 108.2 | H16A—C16—H16B | 108.2 |
| C5—C3—H3 | 108.2 | C22—C17—C18 | 118.4 (4) |
| C3—C4—C6i | 119.0 (3) | C22—C17—C16 | 120.9 (4) |
| C3—C4—H4A | 107.6 | C18—C17—C16 | 120.6 (4) |
| C6i—C4—H4A | 107.6 | C17—C18—C19 | 119.8 (5) |
| C3—C4—H4B | 107.6 | C17—C18—H18 | 120.1 |
| C6i—C4—H4B | 107.6 | C19—C18—H18 | 120.1 |
| H4A—C4—H4B | 107.0 | C20—C19—C18 | 121.6 (5) |
| C3—C5—H5A | 109.5 | C20—C19—H19 | 119.2 |
| C3—C5—H5B | 109.5 | C18—C19—H19 | 119.2 |
| H5A—C5—H5B | 109.5 | C19—C20—C21 | 119.3 (5) |
| C3—C5—H5C | 109.5 | C19—C20—H20 | 120.3 |
| H5A—C5—H5C | 109.5 | C21—C20—H20 | 120.3 |
| H5B—C5—H5C | 109.5 | C20—C21—C22 | 119.8 (5) |
| N1—C6—C8 | 109.6 (3) | C20—C21—H21 | 120.1 |
| N1—C6—C4i | 108.1 (3) | C22—C21—H21 | 120.1 |
| C8—C6—C4i | 111.6 (3) | C17—C22—C21 | 121.0 (5) |
| N1—C6—C7 | 110.2 (3) | C17—C22—H22 | 119.5 |
| C8—C6—C7 | 108.8 (3) | C21—C22—H22 | 119.5 |
| H··· | ||||
| N1—H1···S1 | 0.91 | 2.61 | 3.359 (3) | 140 |
| N2—H2···O2i | 0.91 | 1.85 | 2.762 (4) | 176 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯S1 | 0.91 | 2.61 | 3.359 (3) | 140 |
| N2—H2⋯O2i | 0.91 | 1.85 | 2.762 (4) | 176 |
Symmetry code: (i) .