Literature DB >> 21577390

(meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-azacyclo-tetra-deca-ne)copper(II) bis-(O,S-dibenzyl dithio-phosphate).

Jian-Shen Feng1, Li-Ke Zou, Bin Xie, Yu Wu.   

Abstract

In the crystal structure of the title compound, [Cu(C(16)H(36)N(4))](C(14)H(14)O(2)PS(2))(2), the Cu(II) atom is located on an inversion center and is chelated by four N atoms of the macrocyclic meso-5,5,7,12,12,14- hexa-methyl-1,4,8,11-tetra-azacyclo-tetra-decane ligand in a square-planar geometry, with Cu-N distances of 2.013 (3) and 2.014 (3) Å. In the crystal structure, one O,S-dibenzyl dithio-phosphate counter-anion links with the Cu(II) complex cation through N-H⋯O and N-H⋯S hydrogen bonding. During the synthesis, the structure of the anion re-arranged from O,O'-dibenzyl dithio-phosphate in the starting material to O,S-dibenzyl dithio-phosphate in the title compound.

Entities:  

Year:  2009        PMID: 21577390      PMCID: PMC2969959          DOI: 10.1107/S1600536809030037

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related NiII complex, see: Xie et al. (2008 ▶). For bond-length data, see Allen et al. (1987 ▶).

Experimental

Crystal data

[Cu(C16H36N4)](C14H14O2PS2)2 M = 966.71 Monoclinic, a = 11.476 (4) Å b = 17.592 (4) Å c = 11.945 (4) Å β = 99.78 (2)° V = 2376.4 (13) Å3 Z = 2 Mo Kα radiation μ = 0.75 mm−1 T = 289 K 0.44 × 0.40 × 0.35 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.730, T max = 0.770 4797 measured reflections 4420 independent reflections 2900 reflections with I > 2σ(I) R int = 0.006 3 standard reflections every 300 reflections intensity decay: 6.7%

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.154 S = 1.04 4420 reflections 275 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.69 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809030037/xu2568sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030037/xu2568Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C16H36N4)](C14H14O2PS2)2F(000) = 1022
Mr = 966.71Dx = 1.351 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 29 reflections
a = 11.476 (4) Åθ = 4.4–11.5°
b = 17.592 (4) ŵ = 0.75 mm1
c = 11.945 (4) ÅT = 289 K
β = 99.78 (2)°Block, dark-violet
V = 2376.4 (13) Å30.44 × 0.40 × 0.35 mm
Z = 2
Enraf–Nonius CAD-4 diffractometer2900 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.006
graphiteθmax = 25.6°, θmin = 1.8°
ω/2θ scansh = −13→13
Absorption correction: ψ scan (North et al., 1968)k = 0→21
Tmin = 0.730, Tmax = 0.770l = −4→14
4797 measured reflections3 standard reflections every 300 reflections
4420 independent reflections intensity decay: 6.7%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0968P)2] where P = (Fo2 + 2Fc2)/3
4420 reflections(Δ/σ)max < 0.001
275 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.69 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50000.00000.50000.0373 (2)
S10.45680 (10)0.16085 (8)0.65146 (9)0.0633 (3)
S20.60091 (9)0.16270 (6)0.90486 (8)0.0523 (3)
P10.46223 (8)0.11046 (6)0.79879 (8)0.0426 (3)
O10.3474 (2)0.12698 (17)0.8538 (2)0.0550 (7)
O20.4729 (3)0.02701 (17)0.8069 (3)0.0610 (8)
N10.6456 (2)0.06574 (17)0.5164 (2)0.0376 (7)
H10.63230.10220.56690.045*
N20.4441 (2)0.05885 (17)0.3564 (2)0.0369 (7)
H20.46820.03120.30020.044*
C10.6406 (3)0.1077 (2)0.4085 (3)0.0475 (9)
H1A0.67120.07620.35350.057*
H1B0.68860.15330.42110.057*
C20.5149 (3)0.1285 (2)0.3647 (3)0.0431 (9)
H2A0.48670.16420.41590.052*
H2B0.50860.15220.29060.052*
C30.3165 (3)0.0731 (2)0.3165 (3)0.0444 (9)
H30.28940.11010.36790.053*
C40.2455 (3)0.0014 (2)0.3192 (3)0.0480 (9)
H4A0.2786−0.03660.27470.058*
H4B0.16580.01170.28040.058*
C50.2935 (4)0.1062 (3)0.1966 (4)0.0708 (14)
H5A0.33970.15140.19430.106*
H5B0.21110.11830.17570.106*
H5C0.31520.06950.14420.106*
C60.7638 (3)0.0344 (2)0.5661 (3)0.0415 (8)
C70.8558 (4)0.0984 (3)0.5855 (4)0.0667 (13)
H7A0.85870.12370.51490.100*
H7B0.93210.07730.61470.100*
H7C0.83430.13420.63920.100*
C80.8018 (4)−0.0231 (2)0.4853 (4)0.0546 (10)
H8A0.7366−0.05590.45720.082*
H8B0.8662−0.05280.52460.082*
H8C0.82680.00290.42280.082*
C90.3028 (5)0.2003 (3)0.8600 (5)0.0731 (14)
H9A0.28870.22320.78510.088*
H9B0.35970.23140.90920.088*
C100.1885 (3)0.1965 (2)0.9066 (3)0.0476 (9)
C110.1010 (5)0.1453 (3)0.8683 (4)0.0669 (12)
H110.11190.11130.81140.080*
C12−0.0002 (4)0.1428 (3)0.9107 (5)0.0750 (14)
H12−0.05770.10700.88320.090*
C13−0.0188 (4)0.1915 (3)0.9925 (4)0.0703 (14)
H13−0.08940.18951.02080.084*
C140.0652 (5)0.2437 (3)1.0342 (4)0.0700 (14)
H140.05300.27721.09140.084*
C150.1705 (4)0.2460 (2)0.9893 (4)0.0579 (11)
H150.22840.28171.01630.070*
C160.5930 (4)0.1139 (3)1.0376 (3)0.0676 (14)
H16A0.52850.13461.07100.081*
H16B0.57780.06031.02300.081*
C170.7064 (3)0.1235 (3)1.1178 (3)0.0492 (10)
C180.7318 (4)0.1904 (3)1.1759 (4)0.0618 (12)
H180.67780.23031.16550.074*
C190.8376 (6)0.1983 (3)1.2498 (4)0.0812 (17)
H190.85360.24371.28930.097*
C200.9167 (5)0.1428 (4)1.2658 (4)0.0847 (18)
H200.98820.14961.31450.102*
C210.8919 (5)0.0752 (3)1.2098 (5)0.0809 (16)
H210.94560.03521.22220.097*
C220.7873 (4)0.0666 (3)1.1349 (4)0.0663 (12)
H220.77180.02111.09550.080*
U11U22U33U12U13U23
Cu10.0326 (3)0.0406 (4)0.0394 (3)0.0051 (3)0.0081 (2)0.0141 (3)
S10.0623 (7)0.0895 (9)0.0385 (5)0.0165 (6)0.0100 (5)0.0071 (5)
S20.0512 (6)0.0614 (7)0.0420 (5)−0.0119 (5)0.0015 (4)0.0061 (5)
P10.0407 (5)0.0505 (6)0.0381 (5)0.0035 (4)0.0110 (4)−0.0066 (4)
O10.0499 (16)0.0567 (18)0.0628 (17)0.0093 (14)0.0223 (13)−0.0028 (14)
O20.083 (2)0.0394 (16)0.0649 (18)0.0009 (15)0.0241 (16)−0.0094 (14)
N10.0390 (15)0.0383 (17)0.0360 (15)0.0010 (13)0.0080 (12)0.0041 (13)
N20.0401 (15)0.0398 (17)0.0317 (14)0.0087 (13)0.0085 (12)0.0053 (13)
C10.051 (2)0.049 (2)0.044 (2)−0.0070 (18)0.0104 (17)0.0137 (17)
C20.054 (2)0.034 (2)0.0422 (19)0.0028 (17)0.0115 (16)0.0112 (16)
C30.040 (2)0.045 (2)0.047 (2)0.0107 (17)0.0050 (16)0.0115 (17)
C40.041 (2)0.056 (2)0.045 (2)0.0057 (18)−0.0001 (16)0.0022 (18)
C50.060 (3)0.088 (4)0.059 (3)0.010 (3)−0.003 (2)0.036 (3)
C60.0346 (18)0.043 (2)0.046 (2)−0.0012 (16)0.0029 (15)0.0039 (17)
C70.052 (3)0.067 (3)0.075 (3)−0.019 (2)−0.004 (2)0.010 (2)
C80.053 (2)0.058 (3)0.055 (2)0.011 (2)0.0157 (19)0.006 (2)
C90.077 (3)0.051 (3)0.100 (4)0.000 (2)0.041 (3)0.006 (3)
C100.040 (2)0.050 (2)0.056 (2)0.0059 (18)0.0167 (17)0.0112 (19)
C110.084 (3)0.055 (3)0.064 (3)0.006 (3)0.015 (2)−0.004 (2)
C120.056 (3)0.080 (4)0.087 (4)−0.015 (3)0.007 (3)0.006 (3)
C130.051 (3)0.096 (4)0.068 (3)0.015 (3)0.019 (2)0.028 (3)
C140.081 (3)0.082 (4)0.049 (2)0.035 (3)0.015 (2)0.003 (2)
C150.057 (3)0.050 (3)0.062 (3)0.002 (2)−0.003 (2)0.001 (2)
C160.055 (3)0.102 (4)0.045 (2)−0.023 (3)0.0031 (19)0.018 (2)
C170.046 (2)0.063 (3)0.039 (2)−0.013 (2)0.0062 (16)0.0060 (19)
C180.074 (3)0.066 (3)0.048 (2)−0.006 (2)0.018 (2)0.005 (2)
C190.114 (5)0.084 (4)0.044 (3)−0.044 (4)0.008 (3)−0.004 (3)
C200.070 (3)0.113 (5)0.061 (3)−0.036 (3)−0.016 (3)0.023 (3)
C210.059 (3)0.093 (4)0.085 (4)0.012 (3)−0.004 (3)0.029 (3)
C220.072 (3)0.055 (3)0.070 (3)−0.010 (2)0.008 (2)0.004 (2)
Cu1—N2i2.013 (3)C7—H7B0.9600
Cu1—N22.013 (3)C7—H7C0.9600
Cu1—N1i2.014 (3)C8—H8A0.9600
Cu1—N12.014 (3)C8—H8B0.9600
S1—P11.9619 (15)C8—H8C0.9600
S2—C161.818 (4)C9—C101.510 (6)
S2—P12.0729 (15)C9—H9A0.9700
P1—O21.475 (3)C9—H9B0.9700
P1—O11.596 (3)C10—C151.359 (6)
O1—C91.394 (5)C10—C111.368 (6)
N1—C11.478 (4)C11—C121.344 (7)
N1—C61.491 (4)C11—H110.9300
N1—H10.9100C12—C131.343 (7)
N2—C21.465 (5)C12—H120.9300
N2—C31.482 (4)C13—C141.364 (7)
N2—H20.9100C13—H130.9300
C1—C21.493 (5)C14—C151.404 (7)
C1—H1A0.9700C14—H140.9300
C1—H1B0.9700C15—H150.9300
C2—H2A0.9700C16—C171.489 (5)
C2—H2B0.9700C16—H16A0.9700
C3—C41.506 (5)C16—H16B0.9700
C3—C51.527 (5)C17—C221.356 (6)
C3—H30.9800C17—C181.372 (6)
C4—C6i1.528 (5)C18—C191.382 (7)
C4—H4A0.9700C18—H180.9300
C4—H4B0.9700C19—C201.325 (8)
C5—H5A0.9600C19—H190.9300
C5—H5B0.9600C20—C211.370 (8)
C5—H5C0.9600C20—H200.9300
C6—C81.513 (5)C21—C221.379 (7)
C6—C4i1.528 (5)C21—H210.9300
C6—C71.533 (5)C22—H220.9300
C7—H7A0.9600
N2i—Cu1—N2180.0C4i—C6—C7108.6 (3)
N2i—Cu1—N1i85.80 (11)C6—C7—H7A109.5
N2—Cu1—N1i94.20 (12)C6—C7—H7B109.5
N2i—Cu1—N194.20 (12)H7A—C7—H7B109.5
N2—Cu1—N185.80 (11)C6—C7—H7C109.5
N1i—Cu1—N1180.0H7A—C7—H7C109.5
C16—S2—P1100.18 (15)H7B—C7—H7C109.5
O2—P1—O1102.66 (17)C6—C8—H8A109.5
O2—P1—S1119.89 (13)C6—C8—H8B109.5
O1—P1—S1112.60 (12)H8A—C8—H8B109.5
O2—P1—S2110.77 (14)C6—C8—H8C109.5
O1—P1—S2105.65 (12)H8A—C8—H8C109.5
S1—P1—S2104.60 (7)H8B—C8—H8C109.5
C9—O1—P1121.8 (3)O1—C9—C10109.2 (4)
C1—N1—C6115.4 (3)O1—C9—H9A109.8
C1—N1—Cu1107.0 (2)C10—C9—H9A109.8
C6—N1—Cu1120.7 (2)O1—C9—H9B109.8
C1—N1—H1103.9C10—C9—H9B109.8
C6—N1—H1103.9H9A—C9—H9B108.3
Cu1—N1—H1103.9C15—C10—C11118.1 (4)
C2—N2—C3112.7 (3)C15—C10—C9119.2 (4)
C2—N2—Cu1106.3 (2)C11—C10—C9122.6 (4)
C3—N2—Cu1121.0 (2)C12—C11—C10121.9 (5)
C2—N2—H2105.2C12—C11—H11119.1
C3—N2—H2105.2C10—C11—H11119.1
Cu1—N2—H2105.2C13—C12—C11120.5 (5)
N1—C1—C2108.7 (3)C13—C12—H12119.8
N1—C1—H1A110.0C11—C12—H12119.8
C2—C1—H1A110.0C12—C13—C14120.4 (4)
N1—C1—H1B110.0C12—C13—H13119.8
C2—C1—H1B110.0C14—C13—H13119.8
H1A—C1—H1B108.3C13—C14—C15118.7 (4)
N2—C2—C1108.1 (3)C13—C14—H14120.7
N2—C2—H2A110.1C15—C14—H14120.7
C1—C2—H2A110.1C10—C15—C14120.4 (4)
N2—C2—H2B110.1C10—C15—H15119.8
C1—C2—H2B110.1C14—C15—H15119.8
H2A—C2—H2B108.4C17—C16—S2109.9 (3)
N2—C3—C4111.1 (3)C17—C16—H16A109.7
N2—C3—C5111.7 (3)S2—C16—H16A109.7
C4—C3—C5109.3 (3)C17—C16—H16B109.7
N2—C3—H3108.2S2—C16—H16B109.7
C4—C3—H3108.2H16A—C16—H16B108.2
C5—C3—H3108.2C22—C17—C18118.4 (4)
C3—C4—C6i119.0 (3)C22—C17—C16120.9 (4)
C3—C4—H4A107.6C18—C17—C16120.6 (4)
C6i—C4—H4A107.6C17—C18—C19119.8 (5)
C3—C4—H4B107.6C17—C18—H18120.1
C6i—C4—H4B107.6C19—C18—H18120.1
H4A—C4—H4B107.0C20—C19—C18121.6 (5)
C3—C5—H5A109.5C20—C19—H19119.2
C3—C5—H5B109.5C18—C19—H19119.2
H5A—C5—H5B109.5C19—C20—C21119.3 (5)
C3—C5—H5C109.5C19—C20—H20120.3
H5A—C5—H5C109.5C21—C20—H20120.3
H5B—C5—H5C109.5C20—C21—C22119.8 (5)
N1—C6—C8109.6 (3)C20—C21—H21120.1
N1—C6—C4i108.1 (3)C22—C21—H21120.1
C8—C6—C4i111.6 (3)C17—C22—C21121.0 (5)
N1—C6—C7110.2 (3)C17—C22—H22119.5
C8—C6—C7108.8 (3)C21—C22—H22119.5
D—H···AD—HH···AD···AD—H···A
N1—H1···S10.912.613.359 (3)140
N2—H2···O2i0.911.852.762 (4)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S10.912.613.359 (3)140
N2—H2⋯O2i0.911.852.762 (4)176

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-azacyclo-tetra-deca-ne)nickel(II) bis-(O,O'-dibenzyl dithio-phosphate).

Authors:  Bin Xie; Li-Ke Zou; Yi-Guo He; Jian-Shen Feng; Xiu-Lan Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-04
  2 in total
  4 in total

1.  (C-meso-N-meso-5,12-Dimethyl-7,14-diphenyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-4,11-diene)copper(II) bis-[O,O'-bis-(4-methyl-phen-yl)dithio-phosphate].

Authors:  Li-Ke Zou; Bin Xie; Jian-Shen Feng; Chuan Lai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-17

2.  (C-meso-N-meso-5,12-Dimethyl-7,14-diphenyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-4,11-diene)nickel(II) bis-[O,O'-bis-(4-methyl-phen-yl) dithio-phosphate].

Authors:  Li-Ke Zou; Bin Xie; Jian-Shen Feng; Chuan Lai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27

3.  (meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-ne)copper(II) bis-[O,O'-(o-phenyl-ene)dithio-phosphate].

Authors:  Jian-Shen Feng; Li-Ke Zou; Bin Xie; Yang-Guang Xiang; Chuan Lai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-17

4.  5,5,7,12,12,14-Hexamethyl-1,8-bis-(4-nitro-benz-yl)-1,4,8,11-tetra-aza-cyclo-tetra-deca-ne.

Authors:  K Gayathri; S Sathya; G Usha; G Ramanjaneya Reddy; S Balasubramanian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-14
  4 in total

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