Literature DB >> 22199659

(meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-ne)nickel(II) bis-[O,O'-(1,2-phenyl-ene) dithio-phosphate].

Li-Ke Zou1, Yan Lu, Jie Cheng, Xi-Yang He, Bin Xie.   

Abstract

In the crystal structure of the title compound, [Ni(C(16)H(36)N(4))](C(6)H(4)O(2)PS(2))(2), the Ni(II) cation is located on a center of inversion and is chelated by the folded tetra-amine macrocycle ligand in a slightly distorted NiN(4) square-planar geometry. Two symmetry-related O,O'-(1,2-phenyl-ene)dithio-phosphate anions are located on either side of the Ni(II) cation, with Ni⋯S of 3.9558 (5) Å, and link to the tetra-amine macrocycle ligand via N-H⋯S hydrogen bonding.

Entities:  

Year:  2011        PMID: 22199659      PMCID: PMC3238782          DOI: 10.1107/S1600536811050951

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to tetra­amine macrocycle compounds, see: Aoki & Kimura (2002 ▶). For the structures of analogous adducts, see: Feng et al. (2010 ▶); Lai et al. (2011 ▶); Zou et al. (2010 ▶). For the synthesis of [Et3NH][(o-C6H4O2)PS2], see: Feng et al. (2010 ▶).

Experimental

Crystal data

[Ni(C16H36N4)](C6H4O2PS2)2 M = 749.56 Monoclinic, a = 9.0012 (15) Å b = 20.500 (3) Å c = 9.6682 (17) Å β = 101.029 (3)° V = 1751.1 (5) Å3 Z = 2 Mo Kα radiation μ = 0.92 mm−1 T = 103 K 0.24 × 0.21 × 0.18 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.809, T max = 0.852 9094 measured reflections 3103 independent reflections 2504 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.087 S = 1.04 3103 reflections 197 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811050951/xu5399sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050951/xu5399Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C16H36N4)](C6H4O2PS2)2F(000) = 788
Mr = 749.56Dx = 1.422 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2892 reflections
a = 9.0012 (15) Åθ = 2.4–24.5°
b = 20.500 (3) ŵ = 0.92 mm1
c = 9.6682 (17) ÅT = 103 K
β = 101.029 (3)°Block, orange
V = 1751.1 (5) Å30.24 × 0.21 × 0.18 mm
Z = 2
Bruker SMART 1000 CCD area-detector diffractometer3103 independent reflections
Radiation source: fine-focus sealed tube2504 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 25.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→10
Tmin = 0.809, Tmax = 0.852k = −24→21
9094 measured reflectionsl = −10→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0391P)2 + 0.6628P] where P = (Fo2 + 2Fc2)/3
3103 reflections(Δ/σ)max < 0.001
197 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.00000.50000.03286 (14)
S10.84141 (10)0.04903 (4)0.31736 (11)0.0756 (3)
S20.57109 (9)0.16238 (5)0.21370 (10)0.0726 (3)
P10.78079 (8)0.13550 (4)0.24736 (8)0.0500 (2)
O10.8895 (2)0.18987 (10)0.34393 (19)0.0570 (5)
O20.8521 (2)0.14989 (10)0.10467 (19)0.0585 (5)
N10.3804 (2)0.03328 (10)0.3268 (2)0.0399 (5)
H10.44500.05650.29350.060*
N20.3989 (2)0.06439 (9)0.5965 (2)0.0382 (5)
H20.32560.04110.61480.057*
C10.3140 (3)−0.01378 (13)0.2112 (3)0.0480 (7)
C20.2676 (3)0.08059 (14)0.3600 (3)0.0586 (8)
H2A0.24070.11160.28360.070*
H2B0.17660.05800.37290.070*
C30.3369 (4)0.11486 (13)0.4913 (3)0.0557 (8)
H3A0.26150.14090.52550.067*
H3B0.41720.14350.47410.067*
C40.4665 (3)0.09635 (12)0.7326 (3)0.0446 (6)
H40.53710.13000.71310.054*
C50.5544 (3)0.04792 (14)0.8347 (3)0.0519 (7)
H5A0.48440.01480.85460.062*
H5B0.59270.07060.92230.062*
C60.2265 (4)0.02438 (17)0.0854 (3)0.0718 (10)
H6A0.13770.04330.11040.108*
H6B0.1972−0.00460.00690.108*
H6C0.28970.05830.06000.108*
C70.2087 (3)−0.06079 (15)0.2663 (4)0.0655 (9)
H7A0.2609−0.08030.35220.098*
H7B0.1769−0.09420.19750.098*
H7C0.1217−0.03750.28410.098*
C80.3449 (4)0.12954 (15)0.7982 (3)0.0619 (8)
H8A0.29890.16400.73760.093*
H8B0.39020.14730.88830.093*
H8C0.26920.09820.81020.093*
C90.9811 (3)0.18714 (13)0.1402 (3)0.0471 (7)
C101.0029 (3)0.20927 (12)0.2761 (3)0.0468 (7)
C111.1268 (3)0.24600 (14)0.3339 (4)0.0624 (9)
H111.14220.26080.42650.075*
C121.2278 (4)0.25961 (15)0.2455 (5)0.0791 (12)
H121.31410.28390.28070.095*
C131.2051 (4)0.23869 (18)0.1089 (5)0.0787 (11)
H131.27430.24970.05270.094*
C141.0806 (3)0.20142 (16)0.0538 (4)0.0641 (9)
H141.06470.1865−0.03870.077*
U11U22U33U12U13U23
Ni10.0389 (3)0.0275 (2)0.0334 (2)−0.00032 (19)0.00984 (18)0.00063 (18)
S10.0628 (5)0.0595 (5)0.1091 (7)−0.0099 (4)0.0279 (5)0.0137 (5)
S20.0503 (5)0.0852 (7)0.0857 (6)−0.0006 (4)0.0217 (4)0.0079 (5)
P10.0474 (4)0.0560 (5)0.0498 (4)−0.0123 (4)0.0176 (3)−0.0053 (3)
O10.0628 (12)0.0608 (13)0.0503 (11)−0.0129 (10)0.0184 (10)−0.0141 (9)
O20.0536 (11)0.0802 (14)0.0446 (11)−0.0208 (11)0.0167 (9)−0.0084 (10)
N10.0484 (12)0.0350 (12)0.0364 (11)0.0004 (10)0.0083 (9)−0.0002 (9)
N20.0435 (12)0.0317 (11)0.0410 (12)−0.0022 (9)0.0126 (9)−0.0001 (9)
C10.0514 (16)0.0494 (17)0.0402 (15)−0.0020 (13)0.0014 (12)−0.0059 (12)
C20.0638 (19)0.0555 (18)0.0521 (17)0.0238 (15)−0.0002 (14)−0.0023 (14)
C30.073 (2)0.0432 (16)0.0505 (17)0.0183 (14)0.0106 (15)0.0000 (13)
C40.0549 (16)0.0376 (14)0.0432 (15)−0.0049 (12)0.0138 (12)−0.0072 (12)
C50.0651 (18)0.0538 (17)0.0369 (15)−0.0001 (15)0.0100 (13)−0.0087 (13)
C60.083 (2)0.079 (2)0.0445 (18)0.0131 (19)−0.0088 (16)−0.0060 (16)
C70.0553 (19)0.0515 (18)0.090 (2)−0.0115 (15)0.0137 (17)−0.0112 (17)
C80.081 (2)0.0542 (18)0.0559 (18)0.0109 (16)0.0270 (16)−0.0090 (14)
C90.0394 (15)0.0453 (16)0.0571 (17)0.0003 (12)0.0103 (13)0.0099 (13)
C100.0436 (15)0.0351 (14)0.0619 (18)0.0019 (12)0.0109 (13)0.0032 (13)
C110.0501 (17)0.0376 (16)0.091 (2)0.0022 (14)−0.0069 (17)−0.0060 (15)
C120.0405 (18)0.0412 (19)0.152 (4)−0.0033 (15)0.010 (2)0.015 (2)
C130.050 (2)0.069 (2)0.123 (3)0.0075 (18)0.031 (2)0.040 (2)
C140.0521 (19)0.075 (2)0.070 (2)0.0051 (17)0.0218 (16)0.0247 (17)
Ni1—N11.9332 (19)C4—C81.526 (4)
Ni1—N1i1.9332 (19)C4—H40.9800
Ni1—N2i1.9410 (19)C5—C1i1.514 (4)
Ni1—N21.9410 (19)C5—H5A0.9700
S1—P11.9383 (12)C5—H5B0.9700
S2—P11.9332 (12)C6—H6A0.9600
P1—O11.6497 (19)C6—H6B0.9600
P1—O21.6554 (19)C6—H6C0.9600
O1—C101.374 (3)C7—H7A0.9600
O2—C91.377 (3)C7—H7B0.9600
N1—C21.483 (3)C7—H7C0.9600
N1—C11.511 (3)C8—H8A0.9600
N1—H10.8600C8—H8B0.9600
N2—C31.483 (3)C8—H8C0.9600
N2—C41.491 (3)C9—C101.368 (4)
N2—H20.8600C9—C141.368 (4)
C1—C5i1.514 (4)C10—C111.373 (4)
C1—C71.518 (4)C11—C121.390 (5)
C1—C61.532 (4)C11—H110.9300
C2—C31.480 (4)C12—C131.366 (5)
C2—H2A0.9700C12—H120.9300
C2—H2B0.9700C13—C141.377 (5)
C3—H3A0.9700C13—H130.9300
C3—H3B0.9700C14—H140.9300
C4—C51.512 (4)
N1—Ni1—N1i180.00 (13)C5—C4—C8110.4 (2)
N1—Ni1—N2i93.33 (8)N2—C4—H4108.0
N1i—Ni1—N2i86.67 (8)C5—C4—H4108.0
N1—Ni1—N286.67 (8)C8—C4—H4108.0
N1i—Ni1—N293.33 (8)C4—C5—C1i117.0 (2)
N2i—Ni1—N2180.00 (9)C4—C5—H5A108.1
O1—P1—O293.95 (10)C1i—C5—H5A108.1
O1—P1—S2110.90 (9)C4—C5—H5B108.1
O2—P1—S2109.30 (9)C1i—C5—H5B108.1
O1—P1—S1108.88 (9)H5A—C5—H5B107.3
O2—P1—S1109.02 (9)C1—C6—H6A109.5
S2—P1—S1121.33 (5)C1—C6—H6B109.5
C10—O1—P1109.87 (17)H6A—C6—H6B109.5
C9—O2—P1109.47 (16)C1—C6—H6C109.5
C2—N1—C1112.8 (2)H6A—C6—H6C109.5
C2—N1—Ni1109.51 (16)H6B—C6—H6C109.5
C1—N1—Ni1119.43 (16)C1—C7—H7A109.5
C2—N1—H1105.0C1—C7—H7B109.5
C1—N1—H1106.1H7A—C7—H7B109.5
Ni1—N1—H1102.4C1—C7—H7C109.5
C3—N2—C4109.58 (19)H7A—C7—H7C109.5
C3—N2—Ni1107.08 (15)H7B—C7—H7C109.5
C4—N2—Ni1124.98 (15)C4—C8—H8A109.5
C3—N2—H2109.1C4—C8—H8B109.5
C4—N2—H2105.2H8A—C8—H8B109.5
Ni1—N2—H299.7C4—C8—H8C109.5
N1—C1—C5i106.9 (2)H8A—C8—H8C109.5
N1—C1—C7109.4 (2)H8B—C8—H8C109.5
C5i—C1—C7112.7 (2)C10—C9—C14121.7 (3)
N1—C1—C6109.4 (2)C10—C9—O2112.5 (2)
C5i—C1—C6108.4 (2)C14—C9—O2125.8 (3)
C7—C1—C6110.0 (2)C9—C10—C11121.9 (3)
C3—C2—N1107.6 (2)C9—C10—O1112.3 (2)
C3—C2—H2A110.2C11—C10—O1125.8 (3)
N1—C2—H2A110.2C10—C11—C12115.8 (3)
C3—C2—H2B110.2C10—C11—H11122.1
N1—C2—H2B110.2C12—C11—H11122.1
H2A—C2—H2B108.5C13—C12—C11122.5 (3)
C2—C3—N2107.4 (2)C13—C12—H12118.8
C2—C3—H3A110.2C11—C12—H12118.8
N2—C3—H3A110.2C12—C13—C14120.6 (3)
C2—C3—H3B110.2C12—C13—H13119.7
N2—C3—H3B110.2C14—C13—H13119.7
H3A—C3—H3B108.5C9—C14—C13117.5 (3)
N2—C4—C5111.2 (2)C9—C14—H14121.3
N2—C4—C8111.0 (2)C13—C14—H14121.3
O2—P1—O1—C10−12.84 (19)C4—N2—C3—C2−178.4 (2)
S2—P1—O1—C10−125.24 (16)Ni1—N2—C3—C243.3 (3)
S1—P1—O1—C1098.80 (17)C3—N2—C4—C5−170.2 (2)
O1—P1—O2—C912.24 (19)Ni1—N2—C4—C5−41.2 (3)
S2—P1—O2—C9126.01 (16)C3—N2—C4—C866.5 (3)
S1—P1—O2—C9−99.28 (17)Ni1—N2—C4—C8−164.52 (18)
N2i—Ni1—N1—C2172.52 (18)N2—C4—C5—C1i60.0 (3)
N2—Ni1—N1—C2−7.48 (18)C8—C4—C5—C1i−176.3 (2)
N2i—Ni1—N1—C140.32 (19)P1—O2—C9—C10−8.4 (3)
N2—Ni1—N1—C1−139.68 (19)P1—O2—C9—C14171.1 (2)
N1—Ni1—N2—C3−19.90 (17)C14—C9—C10—C11−1.1 (4)
N1i—Ni1—N2—C3160.10 (17)O2—C9—C10—C11178.4 (2)
N1—Ni1—N2—C4−149.9 (2)C14—C9—C10—O1179.5 (2)
N1i—Ni1—N2—C430.1 (2)O2—C9—C10—O1−1.0 (3)
C2—N1—C1—C5i167.1 (2)P1—O1—C10—C910.0 (3)
Ni1—N1—C1—C5i−62.1 (3)P1—O1—C10—C11−169.3 (2)
C2—N1—C1—C7−70.6 (3)C9—C10—C11—C120.4 (4)
Ni1—N1—C1—C760.1 (3)O1—C10—C11—C12179.7 (3)
C2—N1—C1—C649.9 (3)C10—C11—C12—C130.8 (5)
Ni1—N1—C1—C6−179.32 (19)C11—C12—C13—C14−1.5 (5)
C1—N1—C2—C3169.0 (2)C10—C9—C14—C130.5 (4)
Ni1—N1—C2—C333.5 (3)O2—C9—C14—C13−179.0 (3)
N1—C2—C3—N2−50.3 (3)C12—C13—C14—C90.8 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1···S20.862.633.444 (2)158
N2—H2···S1i0.862.553.386 (2)166
Table 1

Selected bond lengths (Å)

Ni1—N11.9332 (19)
Ni1—N21.9410 (19)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S20.862.633.444 (2)158
N2—H2⋯S1i0.862.553.386 (2)166

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Recent progress in artificial receptors for phosphate anions in aqueous solution.

Authors:  Shin Aoki; Eiichi Kimura
Journal:  J Biotechnol       Date:  2002-04       Impact factor: 3.307

3.  (C-meso-N-meso-5,12-Dimethyl-7,14-diphenyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-4,11-diene)copper(II) bis-[O,O'-bis-(4-methyl-phen-yl)dithio-phosphate].

Authors:  Li-Ke Zou; Bin Xie; Jian-Shen Feng; Chuan Lai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-17

4.  (meso-5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-ne)copper(II) bis-[O,O'-(o-phenyl-ene)dithio-phosphate].

Authors:  Jian-Shen Feng; Li-Ke Zou; Bin Xie; Yang-Guang Xiang; Chuan Lai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-17
  4 in total

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