| Literature DB >> 21589160 |
Hadi Kargar, Reza Kia, Mehmet Akkurt, Orhan Büyükgüngör.
Abstract
The mol-ecule of the title compound, C(8)H(8)BrN(3)OS, is close to being planar, with maximum deviations of -0.127 (3) and 0.135 (5) Å for the N atoms of the -NH- and NH(2)- groups, respectively. Intra-molecular N-H⋯N and O-H⋯N hydrogen bonds to the same acceptor N atom generate S(5) and S(6) ring motifs. In the crystal structure, mol-ecules are connected into [010] chains by pairs of N-H⋯S hydrogen bonds with R(2) (2)(8) graph-set motifs. The crystal used for data collection was found to be an inversion twin.Entities:
Year: 2010 PMID: 21589160 PMCID: PMC3009273 DOI: 10.1107/S1600536810043357
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H8BrN3OS | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 17874 reflections |
| θ = 1.5–26.1° | |
| µ = 4.16 mm−1 | |
| Prism, colourless | |
| 0.13 × 0.09 × 0.05 mm |
| Stoe IPDS II diffractometer | 1934 independent reflections |
| Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 1782 reflections with |
| plane graphite | |
| Detector resolution: 6.67 pixels mm-1 | θmax = 25.6°, θmin = 2.6° |
| ω scans | |
| Absorption correction: integration ( | |
| 9532 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 1934 reflections | Δρmax = 0.54 e Å−3 |
| 144 parameters | Δρmin = −0.29 e Å−3 |
| 4 restraints | Absolute structure: Flack (1983), with 744 Freidel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.477 (11) |
| Geometry. Bond distances, angles |
| Refinement. Refinement on |
| Br1 | 0.80875 (10) | −0.32853 (5) | 0.06313 (1) | 0.0606 (1) | |
| S1 | −0.5577 (2) | 0.35791 (11) | 0.26412 (3) | 0.0517 (3) | |
| O1 | 0.2883 (6) | 0.3331 (3) | 0.08454 (10) | 0.0596 (9) | |
| N1 | −0.0227 (7) | 0.2201 (3) | 0.16022 (10) | 0.0407 (9) | |
| N2 | −0.2226 (8) | 0.2237 (3) | 0.19824 (9) | 0.0408 (9) | |
| N3 | −0.2703 (13) | 0.4940 (4) | 0.19194 (14) | 0.0786 (16) | |
| C1 | 0.4380 (8) | −0.0920 (4) | 0.10693 (12) | 0.0416 (10) | |
| C2 | 0.6401 (7) | −0.1207 (4) | 0.07038 (11) | 0.0420 (10) | |
| C3 | 0.7260 (8) | 0.0001 (5) | 0.03956 (13) | 0.0486 (11) | |
| C4 | 0.6033 (8) | 0.1505 (5) | 0.04464 (12) | 0.0485 (11) | |
| C5 | 0.3981 (7) | 0.1819 (5) | 0.08111 (11) | 0.0418 (10) | |
| C6 | 0.3119 (8) | 0.0589 (4) | 0.11293 (11) | 0.0382 (9) | |
| C7 | 0.0966 (8) | 0.0836 (4) | 0.15148 (11) | 0.0389 (10) | |
| C8 | −0.3365 (8) | 0.3610 (4) | 0.21496 (11) | 0.0416 (10) | |
| H1 | 0.38530 | −0.17450 | 0.12780 | 0.0500* | |
| HN2 | −0.323 (12) | 0.587 (3) | 0.2025 (16) | 0.089 (16)* | |
| HN1 | −0.260 (9) | 0.135 (3) | 0.2114 (12) | 0.050 (11)* | |
| H3 | 0.86620 | −0.01980 | 0.01540 | 0.0580* | |
| HO1 | 0.169 (8) | 0.334 (6) | 0.1064 (12) | 0.071 (14)* | |
| H4 | 0.65840 | 0.23180 | 0.02350 | 0.0580* | |
| HN3 | −0.144 (9) | 0.486 (5) | 0.1681 (12) | 0.071 (14)* | |
| H7 | 0.04290 | −0.00320 | 0.17060 | 0.0470* |
| Br1 | 0.0606 (2) | 0.0575 (2) | 0.0638 (2) | 0.0057 (2) | 0.0074 (2) | −0.0153 (2) |
| S1 | 0.0657 (6) | 0.0400 (5) | 0.0495 (5) | −0.0007 (5) | 0.0199 (4) | −0.0055 (4) |
| O1 | 0.0646 (16) | 0.0493 (14) | 0.0649 (15) | 0.007 (2) | 0.0180 (14) | 0.0102 (14) |
| N1 | 0.0400 (16) | 0.0458 (16) | 0.0364 (13) | −0.0052 (13) | 0.0067 (12) | −0.0039 (11) |
| N2 | 0.0436 (18) | 0.0372 (14) | 0.0415 (14) | −0.0028 (13) | 0.0117 (13) | −0.0030 (11) |
| N3 | 0.122 (4) | 0.0397 (17) | 0.074 (2) | 0.011 (2) | 0.051 (3) | 0.0063 (17) |
| C1 | 0.0408 (17) | 0.0454 (19) | 0.0387 (17) | −0.0065 (16) | 0.0004 (15) | −0.0037 (15) |
| C2 | 0.0341 (18) | 0.0532 (19) | 0.0386 (16) | −0.0029 (14) | 0.0002 (13) | −0.0098 (14) |
| C3 | 0.038 (2) | 0.065 (2) | 0.0428 (17) | −0.0032 (18) | 0.0111 (15) | 0.0010 (16) |
| C4 | 0.0427 (19) | 0.062 (2) | 0.0407 (16) | −0.0058 (19) | 0.0012 (13) | 0.0095 (17) |
| C5 | 0.0368 (17) | 0.0475 (19) | 0.0411 (15) | −0.0069 (17) | 0.0005 (12) | 0.0020 (15) |
| C6 | 0.0320 (14) | 0.0477 (18) | 0.0350 (15) | −0.0045 (17) | −0.0008 (15) | −0.0019 (13) |
| C7 | 0.0374 (19) | 0.0462 (18) | 0.0332 (15) | −0.0033 (15) | 0.0027 (13) | −0.0010 (14) |
| C8 | 0.0465 (18) | 0.0381 (18) | 0.0402 (15) | −0.0006 (17) | 0.0002 (15) | −0.0030 (13) |
| Br1—C2 | 1.902 (3) | C1—C2 | 1.377 (5) |
| S1—C8 | 1.682 (3) | C1—C6 | 1.390 (5) |
| O1—C5 | 1.358 (5) | C2—C3 | 1.376 (5) |
| O1—HO1 | 0.81 (3) | C3—C4 | 1.377 (6) |
| N1—N2 | 1.380 (4) | C4—C5 | 1.388 (5) |
| N1—C7 | 1.281 (4) | C5—C6 | 1.407 (5) |
| N2—C8 | 1.337 (4) | C6—C7 | 1.451 (5) |
| N3—C8 | 1.315 (5) | C1—H1 | 0.9300 |
| N2—HN1 | 0.84 (3) | C3—H3 | 0.9300 |
| N3—HN2 | 0.86 (3) | C4—H4 | 0.9300 |
| N3—HN3 | 0.87 (4) | C7—H7 | 0.9300 |
| C5—O1—HO1 | 107 (4) | O1—C5—C4 | 117.7 (3) |
| N2—N1—C7 | 115.6 (3) | C5—C6—C7 | 122.6 (3) |
| N1—N2—C8 | 121.9 (3) | C1—C6—C5 | 118.5 (3) |
| C8—N2—HN1 | 122 (2) | C1—C6—C7 | 119.0 (3) |
| N1—N2—HN1 | 116 (2) | N1—C7—C6 | 122.7 (3) |
| HN2—N3—HN3 | 120 (4) | N2—C8—N3 | 118.1 (3) |
| C8—N3—HN2 | 122 (3) | S1—C8—N2 | 119.4 (3) |
| C8—N3—HN3 | 117 (3) | S1—C8—N3 | 122.5 (3) |
| C2—C1—C6 | 120.7 (3) | C2—C1—H1 | 120.00 |
| Br1—C2—C3 | 119.6 (3) | C6—C1—H1 | 120.00 |
| C1—C2—C3 | 120.7 (3) | C2—C3—H3 | 120.00 |
| Br1—C2—C1 | 119.7 (2) | C4—C3—H3 | 120.00 |
| C2—C3—C4 | 119.7 (3) | C3—C4—H4 | 120.00 |
| C3—C4—C5 | 120.6 (4) | C5—C4—H4 | 120.00 |
| C4—C5—C6 | 119.9 (4) | N1—C7—H7 | 119.00 |
| O1—C5—C6 | 122.5 (3) | C6—C7—H7 | 119.00 |
| C7—N1—N2—C8 | 172.0 (3) | C2—C3—C4—C5 | 1.2 (5) |
| N2—N1—C7—C6 | −179.8 (3) | C3—C4—C5—O1 | 179.2 (3) |
| N1—N2—C8—S1 | −175.2 (3) | C3—C4—C5—C6 | −0.6 (5) |
| N1—N2—C8—N3 | 4.9 (5) | C4—C5—C6—C1 | 0.4 (5) |
| C2—C1—C6—C7 | 179.1 (3) | O1—C5—C6—C1 | −179.5 (3) |
| C2—C1—C6—C5 | −0.7 (5) | O1—C5—C6—C7 | 0.7 (5) |
| C6—C1—C2—Br1 | 180.0 (3) | C4—C5—C6—C7 | −179.4 (3) |
| C6—C1—C2—C3 | 1.2 (5) | C1—C6—C7—N1 | 177.9 (3) |
| Br1—C2—C3—C4 | 179.8 (3) | C5—C6—C7—N1 | −2.3 (5) |
| C1—C2—C3—C4 | −1.5 (5) |
| H··· | ||||
| O1—HO1···N1 | 0.81 (3) | 1.97 (4) | 2.685 (4) | 149 (5) |
| N3—HN3···N1 | 0.87 (4) | 2.30 (4) | 2.688 (5) | 107 (3) |
| N2—HN1···S1i | 0.84 (3) | 2.55 (3) | 3.373 (3) | 168 (3) |
| N3—HN2···S1ii | 0.86 (3) | 2.50 (3) | 3.363 (4) | 176 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—HO1⋯N1 | 0.81 (3) | 1.97 (4) | 2.685 (4) | 149 (5) |
| N3—HN3⋯N1 | 0.87 (4) | 2.30 (4) | 2.688 (5) | 107 (3) |
| N2—HN1⋯S1i | 0.84 (3) | 2.55 (3) | 3.373 (3) | 168 (3) |
| N3—HN2⋯S1ii | 0.86 (3) | 2.50 (3) | 3.363 (4) | 176 (6) |
Symmetry codes: (i) ; (ii) .