Literature DB >> 21589160

5-Bromo-2-hy-droxy-benzaldehyde thio-semicarbazone.

Hadi Kargar, Reza Kia, Mehmet Akkurt, Orhan Büyükgüngör.   

Abstract

The mol-ecule of the title compound, C(8)H(8)BrN(3)OS, is close to being planar, with maximum deviations of -0.127 (3) and 0.135 (5) Å for the N atoms of the -NH- and NH(2)- groups, respectively. Intra-molecular N-H⋯N and O-H⋯N hydrogen bonds to the same acceptor N atom generate S(5) and S(6) ring motifs. In the crystal structure, mol-ecules are connected into [010] chains by pairs of N-H⋯S hydrogen bonds with R(2) (2)(8) graph-set motifs. The crystal used for data collection was found to be an inversion twin.

Entities:  

Year:  2010        PMID: 21589160      PMCID: PMC3009273          DOI: 10.1107/S1600536810043357

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the biological activities and pharmaceutical properties of thio­semicarbazones and their derivatives, see: Casas et al. (2000 ▶); Ferrari et al. (2000 ▶); Maccioni et al. (2003 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H8BrN3OS M = 274.14 Orthorhombic, a = 4.4564 (2) Å b = 8.3515 (3) Å c = 27.7153 (14) Å V = 1031.50 (8) Å3 Z = 4 Mo Kα radiation μ = 4.16 mm−1 T = 296 K 0.13 × 0.09 × 0.05 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.614, T max = 0.819 9532 measured reflections 1934 independent reflections 1782 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.063 S = 1.04 1934 reflections 144 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.54 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), with 744 Freidel pairs Flack parameter: 0.477 (11) Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810043357/hb5704sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043357/hb5704Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8BrN3OSF(000) = 544
Mr = 274.14Dx = 1.765 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 17874 reflections
a = 4.4564 (2) Åθ = 1.5–26.1°
b = 8.3515 (3) ŵ = 4.16 mm1
c = 27.7153 (14) ÅT = 296 K
V = 1031.50 (8) Å3Prism, colourless
Z = 40.13 × 0.09 × 0.05 mm
Stoe IPDS II diffractometer1934 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus1782 reflections with I > 2σ(I)
plane graphiteRint = 0.037
Detector resolution: 6.67 pixels mm-1θmax = 25.6°, θmin = 2.6°
ω scansh = −5→5
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −10→10
Tmin = 0.614, Tmax = 0.819l = −33→33
9532 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.063w = 1/[σ2(Fo2) + (0.0281P)2 + 0.5533P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1934 reflectionsΔρmax = 0.54 e Å3
144 parametersΔρmin = −0.29 e Å3
4 restraintsAbsolute structure: Flack (1983), with 744 Freidel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.477 (11)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.80875 (10)−0.32853 (5)0.06313 (1)0.0606 (1)
S1−0.5577 (2)0.35791 (11)0.26412 (3)0.0517 (3)
O10.2883 (6)0.3331 (3)0.08454 (10)0.0596 (9)
N1−0.0227 (7)0.2201 (3)0.16022 (10)0.0407 (9)
N2−0.2226 (8)0.2237 (3)0.19824 (9)0.0408 (9)
N3−0.2703 (13)0.4940 (4)0.19194 (14)0.0786 (16)
C10.4380 (8)−0.0920 (4)0.10693 (12)0.0416 (10)
C20.6401 (7)−0.1207 (4)0.07038 (11)0.0420 (10)
C30.7260 (8)0.0001 (5)0.03956 (13)0.0486 (11)
C40.6033 (8)0.1505 (5)0.04464 (12)0.0485 (11)
C50.3981 (7)0.1819 (5)0.08111 (11)0.0418 (10)
C60.3119 (8)0.0589 (4)0.11293 (11)0.0382 (9)
C70.0966 (8)0.0836 (4)0.15148 (11)0.0389 (10)
C8−0.3365 (8)0.3610 (4)0.21496 (11)0.0416 (10)
H10.38530−0.174500.127800.0500*
HN2−0.323 (12)0.587 (3)0.2025 (16)0.089 (16)*
HN1−0.260 (9)0.135 (3)0.2114 (12)0.050 (11)*
H30.86620−0.019800.015400.0580*
HO10.169 (8)0.334 (6)0.1064 (12)0.071 (14)*
H40.658400.231800.023500.0580*
HN3−0.144 (9)0.486 (5)0.1681 (12)0.071 (14)*
H70.04290−0.003200.170600.0470*
U11U22U33U12U13U23
Br10.0606 (2)0.0575 (2)0.0638 (2)0.0057 (2)0.0074 (2)−0.0153 (2)
S10.0657 (6)0.0400 (5)0.0495 (5)−0.0007 (5)0.0199 (4)−0.0055 (4)
O10.0646 (16)0.0493 (14)0.0649 (15)0.007 (2)0.0180 (14)0.0102 (14)
N10.0400 (16)0.0458 (16)0.0364 (13)−0.0052 (13)0.0067 (12)−0.0039 (11)
N20.0436 (18)0.0372 (14)0.0415 (14)−0.0028 (13)0.0117 (13)−0.0030 (11)
N30.122 (4)0.0397 (17)0.074 (2)0.011 (2)0.051 (3)0.0063 (17)
C10.0408 (17)0.0454 (19)0.0387 (17)−0.0065 (16)0.0004 (15)−0.0037 (15)
C20.0341 (18)0.0532 (19)0.0386 (16)−0.0029 (14)0.0002 (13)−0.0098 (14)
C30.038 (2)0.065 (2)0.0428 (17)−0.0032 (18)0.0111 (15)0.0010 (16)
C40.0427 (19)0.062 (2)0.0407 (16)−0.0058 (19)0.0012 (13)0.0095 (17)
C50.0368 (17)0.0475 (19)0.0411 (15)−0.0069 (17)0.0005 (12)0.0020 (15)
C60.0320 (14)0.0477 (18)0.0350 (15)−0.0045 (17)−0.0008 (15)−0.0019 (13)
C70.0374 (19)0.0462 (18)0.0332 (15)−0.0033 (15)0.0027 (13)−0.0010 (14)
C80.0465 (18)0.0381 (18)0.0402 (15)−0.0006 (17)0.0002 (15)−0.0030 (13)
Br1—C21.902 (3)C1—C21.377 (5)
S1—C81.682 (3)C1—C61.390 (5)
O1—C51.358 (5)C2—C31.376 (5)
O1—HO10.81 (3)C3—C41.377 (6)
N1—N21.380 (4)C4—C51.388 (5)
N1—C71.281 (4)C5—C61.407 (5)
N2—C81.337 (4)C6—C71.451 (5)
N3—C81.315 (5)C1—H10.9300
N2—HN10.84 (3)C3—H30.9300
N3—HN20.86 (3)C4—H40.9300
N3—HN30.87 (4)C7—H70.9300
C5—O1—HO1107 (4)O1—C5—C4117.7 (3)
N2—N1—C7115.6 (3)C5—C6—C7122.6 (3)
N1—N2—C8121.9 (3)C1—C6—C5118.5 (3)
C8—N2—HN1122 (2)C1—C6—C7119.0 (3)
N1—N2—HN1116 (2)N1—C7—C6122.7 (3)
HN2—N3—HN3120 (4)N2—C8—N3118.1 (3)
C8—N3—HN2122 (3)S1—C8—N2119.4 (3)
C8—N3—HN3117 (3)S1—C8—N3122.5 (3)
C2—C1—C6120.7 (3)C2—C1—H1120.00
Br1—C2—C3119.6 (3)C6—C1—H1120.00
C1—C2—C3120.7 (3)C2—C3—H3120.00
Br1—C2—C1119.7 (2)C4—C3—H3120.00
C2—C3—C4119.7 (3)C3—C4—H4120.00
C3—C4—C5120.6 (4)C5—C4—H4120.00
C4—C5—C6119.9 (4)N1—C7—H7119.00
O1—C5—C6122.5 (3)C6—C7—H7119.00
C7—N1—N2—C8172.0 (3)C2—C3—C4—C51.2 (5)
N2—N1—C7—C6−179.8 (3)C3—C4—C5—O1179.2 (3)
N1—N2—C8—S1−175.2 (3)C3—C4—C5—C6−0.6 (5)
N1—N2—C8—N34.9 (5)C4—C5—C6—C10.4 (5)
C2—C1—C6—C7179.1 (3)O1—C5—C6—C1−179.5 (3)
C2—C1—C6—C5−0.7 (5)O1—C5—C6—C70.7 (5)
C6—C1—C2—Br1180.0 (3)C4—C5—C6—C7−179.4 (3)
C6—C1—C2—C31.2 (5)C1—C6—C7—N1177.9 (3)
Br1—C2—C3—C4179.8 (3)C5—C6—C7—N1−2.3 (5)
C1—C2—C3—C4−1.5 (5)
D—H···AD—HH···AD···AD—H···A
O1—HO1···N10.81 (3)1.97 (4)2.685 (4)149 (5)
N3—HN3···N10.87 (4)2.30 (4)2.688 (5)107 (3)
N2—HN1···S1i0.84 (3)2.55 (3)3.373 (3)168 (3)
N3—HN2···S1ii0.86 (3)2.50 (3)3.363 (4)176 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—HO1⋯N10.81 (3)1.97 (4)2.685 (4)149 (5)
N3—HN3⋯N10.87 (4)2.30 (4)2.688 (5)107 (3)
N2—HN1⋯S1i0.84 (3)2.55 (3)3.373 (3)168 (3)
N3—HN2⋯S1ii0.86 (3)2.50 (3)3.363 (4)176 (6)

Symmetry codes: (i) ; (ii) .

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