Literature DB >> 22969441

[1-(5-Bromo-2-oxidobenzyl-idene)thio-semicarbazidato-κ(3)O,N(1),S](pyridine-κN)nickel(II).

Fernanda Rosi Soares Pederzolli, Leandro Bresolin, Johannes Beck, Jörg Daniels, Adriano Bof de Oliveira.   

Abstract

The reaction of 5-bromo-salicyl-aldehyde thio-semicarbazone with nickel acetate tetra-hydrate and pyridine yielded the title compound, [Ni(C(8)H(6)BrN(3)OS)(C(5)H(5)N)]. The Ni(II) atom is four-coordinated in a square-planar environment by one deprotonated dianionic thio-semicarbazone ligand, acting in a tridentate chelating mode through N, O and S atoms forming two metalla-rings, and by one pyridine mol-ecule. The complex mol-ecules are linked into dimers by pairs of centrosym-metrical N-H⋯N inter-actions. In addition, mol-ecules are connected through inter-molecular BrBr inter-actions [3.545 (1) Å], forming chains along the b-axis direction.

Entities:  

Year:  2012        PMID: 22969441      PMCID: PMC3435568          DOI: 10.1107/S1600536812028917

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 5-bromo­salicyl­aldehyde thio­semi­carba­zones and for the anti­bacterial activity of their complexes, see: Joseph et al. (2010 ▶). For the crystal structure of 5-bromo­salicyl­aldehyde thio­semicarbazone, see: Kargar et al. (2010 ▶). For the crystal structure of an NiII complex with a similar coordination environment, see: Güveli et al. (2009 ▶). For the coordination chemistry of thio­semicarbazone derivatives, see: Lobana et al. (2009 ▶).

Experimental

Crystal data

[Ni(C8H6BrN3OS)(C5H5N)] M = 409.94 Monoclinic, a = 12.2447 (4) Å b = 4.1135 (1) Å c = 31.1380 (11) Å β = 112.646 (1)° V = 1447.46 (8) Å3 Z = 4 Mo Kα radiation μ = 4.25 mm−1 T = 293 K 0.93 × 0.10 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.443, T max = 0.830 13946 measured reflections 3224 independent reflections 2697 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.083 S = 1.05 3224 reflections 190 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.66 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812028917/zl2486sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028917/zl2486Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C8H6BrN3OS)(C5H5N)]F(000) = 816
Mr = 409.94Dx = 1.881 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 17227 reflections
a = 12.2447 (4) Åθ = 2.9–27.5°
b = 4.1135 (1) ŵ = 4.25 mm1
c = 31.1380 (11) ÅT = 293 K
β = 112.646 (1)°Needle, red
V = 1447.46 (8) Å30.93 × 0.10 × 0.05 mm
Z = 4
Nonius KappaCCD diffractometer3224 independent reflections
Radiation source: fine-focus sealed tube, Bruker Kappa CCD2697 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.051
Detector resolution: 9 pixels mm-1θmax = 27.6°, θmin = 3.3°
CCD rotation images, thick slices scansh = −15→15
Absorption correction: multi-scan (Blessing, 1995)k = −5→5
Tmin = 0.443, Tmax = 0.830l = −40→40
13946 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0442P)2 + 0.6555P] where P = (Fo2 + 2Fc2)/3
3224 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.66 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br11.37247 (2)0.72025 (7)0.228104 (10)0.04622 (11)
Ni10.80812 (3)−0.06339 (9)0.089703 (11)0.03527 (11)
S10.71884 (6)−0.35252 (19)0.02859 (2)0.04380 (17)
O10.87955 (16)0.1736 (5)0.14418 (7)0.0419 (4)
N10.93997 (18)−0.0757 (5)0.07408 (7)0.0339 (4)
N20.9399 (2)−0.2507 (6)0.03540 (8)0.0403 (5)
N30.8245 (2)−0.5541 (7)−0.02746 (9)0.0519 (6)
H10.8831−0.6069−0.030.062*
H20.7769−0.6986−0.03340.062*
N40.67067 (19)−0.0743 (6)0.10494 (8)0.0383 (5)
C11.0684 (2)0.2490 (6)0.13889 (9)0.0350 (5)
C20.9877 (2)0.2887 (6)0.16117 (9)0.0357 (5)
C31.0269 (2)0.4575 (7)0.20359 (10)0.0423 (6)
H30.97510.48580.21870.051*
C41.1399 (2)0.5829 (7)0.22359 (10)0.0428 (6)
H41.16420.69230.25190.051*
C51.2167 (2)0.5430 (6)0.20077 (9)0.0377 (5)
C61.1830 (2)0.3830 (7)0.15955 (10)0.0377 (5)
H61.23580.36160.14480.045*
C71.0394 (2)0.0704 (7)0.09658 (9)0.0380 (6)
H71.09710.05790.08410.046*
C80.8393 (2)−0.3869 (7)0.01258 (9)0.0390 (6)
C90.5660 (2)0.0532 (7)0.07772 (10)0.0439 (6)
H90.5580.14370.04930.053*
C100.4699 (3)0.0547 (9)0.09040 (12)0.0553 (8)
H100.39860.14750.07110.066*
C110.4810 (3)−0.0826 (9)0.13187 (12)0.0586 (8)
H110.4172−0.08450.14110.07*
C120.5869 (3)−0.2171 (8)0.15973 (11)0.0569 (8)
H120.5955−0.31310.18790.068*
C130.6808 (3)−0.2087 (8)0.14557 (10)0.0476 (7)
H130.7528−0.29850.16470.057*
U11U22U33U12U13U23
Br10.03290 (15)0.0510 (2)0.05011 (18)−0.00359 (11)0.01082 (12)−0.00312 (13)
Ni10.03052 (17)0.0412 (2)0.03447 (17)0.00019 (13)0.01296 (13)0.00106 (13)
S10.0378 (3)0.0507 (4)0.0424 (4)−0.0046 (3)0.0148 (3)−0.0052 (3)
O10.0321 (9)0.0540 (12)0.0406 (10)−0.0025 (8)0.0151 (8)−0.0049 (9)
N10.0352 (10)0.0337 (11)0.0336 (10)0.0034 (8)0.0141 (9)0.0010 (9)
N20.0419 (12)0.0419 (13)0.0399 (12)0.0010 (10)0.0189 (10)−0.0039 (10)
N30.0488 (14)0.0583 (17)0.0502 (14)−0.0046 (12)0.0210 (12)−0.0152 (12)
N40.0346 (11)0.0443 (13)0.0356 (11)−0.0030 (9)0.0130 (9)−0.0002 (9)
C10.0327 (12)0.0355 (13)0.0367 (13)0.0030 (10)0.0132 (10)0.0025 (10)
C20.0297 (11)0.0387 (14)0.0389 (13)0.0030 (10)0.0134 (10)0.0046 (11)
C30.0359 (13)0.0526 (17)0.0410 (13)0.0018 (12)0.0179 (11)−0.0023 (12)
C40.0387 (13)0.0475 (16)0.0393 (13)0.0025 (12)0.0118 (11)−0.0041 (12)
C50.0289 (11)0.0358 (14)0.0438 (14)0.0008 (10)0.0089 (10)0.0030 (11)
C60.0311 (12)0.0391 (14)0.0443 (14)0.0020 (10)0.0159 (11)0.0018 (11)
C70.0348 (12)0.0405 (15)0.0426 (14)0.0023 (11)0.0191 (11)0.0007 (11)
C80.0431 (14)0.0363 (14)0.0376 (13)0.0049 (11)0.0157 (11)0.0021 (11)
C90.0365 (13)0.0535 (18)0.0393 (14)0.0004 (12)0.0120 (11)0.0060 (12)
C100.0349 (14)0.072 (2)0.0588 (18)0.0048 (14)0.0179 (13)0.0068 (16)
C110.0478 (17)0.076 (2)0.064 (2)−0.0003 (16)0.0339 (16)0.0031 (17)
C120.062 (2)0.071 (2)0.0460 (17)−0.0009 (17)0.0303 (16)0.0069 (16)
C130.0418 (14)0.0607 (19)0.0390 (14)0.0018 (13)0.0141 (12)0.0074 (13)
Br1—C51.909 (3)C2—C31.403 (4)
Ni1—N11.858 (2)C3—C41.380 (4)
Ni1—O11.8576 (19)C3—H30.93
Ni1—N41.917 (2)C4—C51.390 (4)
Ni1—S12.1516 (8)C4—H40.93
S1—C81.735 (3)C5—C61.358 (4)
O1—C21.311 (3)C6—H60.93
N1—C71.295 (3)C7—H70.93
N1—N21.403 (3)C9—C101.378 (4)
N2—C81.289 (4)C9—H90.93
N3—C81.373 (4)C10—C111.367 (5)
N3—H10.7822C10—H100.93
N3—H20.8025C11—C121.369 (5)
N4—C91.341 (4)C11—H110.93
N4—C131.342 (4)C12—C131.381 (4)
C1—C61.411 (4)C12—H120.93
C1—C21.419 (3)C13—H130.93
C1—C71.429 (4)
N1—Ni1—O195.87 (9)C5—C4—H4120.5
N1—Ni1—N4177.00 (10)C6—C5—C4121.4 (2)
O1—Ni1—N486.32 (9)C6—C5—Br1119.63 (19)
N1—Ni1—S187.15 (7)C4—C5—Br1118.9 (2)
O1—Ni1—S1176.46 (6)C5—C6—C1120.5 (2)
N4—Ni1—S190.60 (7)C5—C6—H6119.8
C8—S1—Ni195.77 (10)C1—C6—H6119.8
C2—O1—Ni1127.26 (17)N1—C7—C1125.8 (2)
C7—N1—N2113.1 (2)N1—C7—H7117.1
C7—N1—Ni1125.23 (18)C1—C7—H7117.1
N2—N1—Ni1121.70 (16)N2—C8—N3118.8 (2)
C8—N2—N1112.4 (2)N2—C8—S1122.9 (2)
C8—N3—H1115.1N3—C8—S1118.2 (2)
C8—N3—H2114.2N4—C9—C10122.3 (3)
H1—N3—H2112.6N4—C9—H9118.8
C9—N4—C13118.4 (2)C10—C9—H9118.8
C9—N4—Ni1123.42 (18)C11—C10—C9118.9 (3)
C13—N4—Ni1118.17 (19)C11—C10—H10120.5
C6—C1—C2119.3 (2)C9—C10—H10120.5
C6—C1—C7118.2 (2)C10—C11—C12119.4 (3)
C2—C1—C7122.5 (2)C10—C11—H11120.3
O1—C2—C3119.0 (2)C12—C11—H11120.3
O1—C2—C1123.2 (2)C11—C12—C13119.3 (3)
C3—C2—C1117.8 (2)C11—C12—H12120.4
C4—C3—C2122.0 (2)C13—C12—H12120.4
C4—C3—H3119N4—C13—C12121.7 (3)
C2—C3—H3119N4—C13—H13119.2
C3—C4—C5118.9 (3)C12—C13—H13119.2
C3—C4—H4120.5
N1—Ni1—S1—C81.82 (11)C3—C4—C5—C6−0.3 (4)
N4—Ni1—S1—C8−176.20 (12)C3—C4—C5—Br1179.4 (2)
N1—Ni1—O1—C21.9 (2)C4—C5—C6—C1−0.7 (4)
N4—Ni1—O1—C2179.8 (2)Br1—C5—C6—C1179.7 (2)
O1—Ni1—N1—C7−4.3 (2)C2—C1—C6—C51.3 (4)
S1—Ni1—N1—C7177.6 (2)C7—C1—C6—C5−177.2 (2)
O1—Ni1—N1—N2175.74 (19)N2—N1—C7—C1−175.7 (2)
S1—Ni1—N1—N2−2.40 (18)Ni1—N1—C7—C14.3 (4)
C7—N1—N2—C8−178.1 (2)C6—C1—C7—N1177.7 (3)
Ni1—N1—N2—C81.9 (3)C2—C1—C7—N1−0.7 (4)
O1—Ni1—N4—C9119.2 (2)N1—N2—C8—N3177.0 (2)
S1—Ni1—N4—C9−62.5 (2)N1—N2—C8—S10.2 (3)
O1—Ni1—N4—C13−58.9 (2)Ni1—S1—C8—N2−1.6 (3)
S1—Ni1—N4—C13119.3 (2)Ni1—S1—C8—N3−178.4 (2)
Ni1—O1—C2—C3−178.72 (19)C13—N4—C9—C101.0 (4)
Ni1—O1—C2—C10.8 (4)Ni1—N4—C9—C10−177.1 (2)
C6—C1—C2—O1179.6 (2)N4—C9—C10—C11−0.9 (5)
C7—C1—C2—O1−2.0 (4)C9—C10—C11—C120.1 (5)
C6—C1—C2—C3−0.9 (4)C10—C11—C12—C130.6 (5)
C7—C1—C2—C3177.5 (2)C9—N4—C13—C12−0.2 (4)
O1—C2—C3—C4179.5 (3)Ni1—N4—C13—C12178.0 (2)
C1—C2—C3—C40.0 (4)C11—C12—C13—N4−0.6 (5)
C2—C3—C4—C50.6 (4)
D—H···AD—HH···AD···AD—H···A
N3—H1···N2i0.782.313.095 (3)178
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H1⋯N2i 0.782.313.095 (3)178

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  5-Bromo-2-hy-droxy-benzaldehyde thio-semicarbazone.

Authors:  Hadi Kargar; Reza Kia; Mehmet Akkurt; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-31
  3 in total

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