| Literature DB >> 29850036 |
Palaniyappan Sivajeyanthi1, Muthaiah Jeevaraj1, Bellarmin Edison1, Kasthuri Balasubramani1.
Abstract
The mol-ecule of the title Schiff base, C8H8BrN3OS·C2H6OS, which crystallizes as a di-methyl sulfoxide (DMSO) monosolvate, displays an E configuration with respect to the C=N bond, with a dihedral angle of 14.54 (11)° between the benzene ring and the mean plane of the N-N-C(N)=S unit. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, forming chains propagating along the b-axis direction. Within the chains there are R23(11) ring motifs, which are reinforced by C-H⋯ODMSO hydrogen bonds enclosing secondary R12(6) and R23(9) loops. The chains are linked by O-Hhydrox-yl⋯S hydrogen bonds, forming layers parallel to (011). Inversion-related layers are linked by short Br⋯Br inter-actions [3.5585 (5) Å], forming slabs parallel to (011). The inter-molecular inter-actions have been investigated using Hirshfeld surface studies and two-dimensional fingerprint plots. The crystal structure of the unsolvated form of the title compound has been reported previously [Kargar et al. (2010). Acta Cryst. E66, o2999], and its solid-state structure is compared with that of the title solvated form.Entities:
Keywords: Hirshfeld surface analysis; Schiff base; crystal structure; hydrazinecarbothioamide; hydrogen bonding
Year: 2018 PMID: 29850036 PMCID: PMC5956319 DOI: 10.1107/S2056989018000233
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the molecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Figure 2The structural overlay of the title molecule with that of the unsolvated form (CEDPAE; Kargar et al., 2010a ▸), showing the presence of the intramolecular O—H⋯N hydrogen bond (dashed line) in CEDPAE.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯S1i | 0.82 | 2.40 | 3.1655 (17) | 157 |
| N2—H2⋯O2ii | 0.86 | 2.10 | 2.897 (2) | 155 |
| N3—H3 | 0.86 | 2.37 | 3.048 (2) | 136 |
| N3—H3 | 0.86 | 2.11 | 2.930 (3) | 160 |
| C7—H7⋯O2ii | 0.93 | 2.53 | 3.315 (3) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 3A partial view, almost normal to the (011) plane, of the hydrogen-bonded chain (dashed lines; see Table 1 ▸) propagating along the [010] direction. In this and subsequent figures, only the H atoms involved in hydrogen bonding have been included.
Figure 4A view, almost normal to (011), of the hydrogen-bonded sheets parallel to (011). The hydrogen bonds are shown as dashed lines and details are given in Table 1 ▸.
Figure 5A view along the b axis of the crystal packing of the title compound. The hydrogen bonds (see Table 1 ▸) and the short Br⋯Br interactions are shown as dashed lines.
Figure 6Hirshfeld surfaces mapped over d norm for the title compound.
Figure 7Two-dimensional fingerprint plots of the crystal and the relative contributions of the atom pairs to the Hirshfeld surface.
Experimental details
| Crystal data | |
| Chemical formula | C8H8BrN3OS·C2H6OS |
|
| 352.26 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 296 |
|
| 6.5411 (4), 7.3889 (6), 15.0662 (12) |
| α, β, γ (°) | 78.772 (3), 86.872 (3), 87.376 (3) |
|
| 712.71 (9) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 3.17 |
| Crystal size (mm) | 0.30 × 0.20 × 0.20 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.449, 0.569 |
| No. of measured, independent and observed [ | 6030, 3299, 2661 |
|
| 0.018 |
| (sin θ/λ)max (Å−1) | 0.666 |
| Refinement | |
|
| 0.030, 0.106, 0.79 |
| No. of reflections | 3299 |
| No. of parameters | 165 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.27, −0.34 |
Computer programs: APEX2, SAINT and XPREP (Bruker, 2004 ▸), SIR92 (Altomare et al., 1993 ▸), SHELXL2017/1 (Sheldrick, 2015 ▸), PLATON (Spek 2009 ▸), Mercury (Macrae et al., 2008 ▸) and publCIF (Westrip, 2010 ▸).
| C8H8BrN3OS·C2H6OS | |
| Triclinic, | |
| Mo | |
| Cell parameters from 2934 reflections | |
| θ = 5.5–55.9° | |
| α = 78.772 (3)° | µ = 3.17 mm−1 |
| β = 86.872 (3)° | |
| γ = 87.376 (3)° | Block, colourless |
| 0.30 × 0.20 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 2661 reflections with |
| Radiation source: fine-focus sealed tube | |
| ω and φ scan | θmax = 28.3°, θmin = 3.4° |
| Absorption correction: multi-scan (SADABS; Bruker, 2004) | |
| 6030 measured reflections | |
| 3299 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3299 reflections | (Δ/σ)max = 0.001 |
| 165 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | 0.20262 (4) | 0.63938 (4) | 0.51812 (2) | 0.0512 (1) | |
| S1 | 1.36501 (8) | 0.37819 (8) | 0.83370 (4) | 0.0359 (2) | |
| S2 | 0.24643 (10) | 0.89596 (8) | 0.93448 (4) | 0.0421 (2) | |
| O1 | 0.6312 (2) | 1.1359 (2) | 0.71559 (12) | 0.0382 (5) | |
| N1 | 0.8705 (3) | 0.6223 (3) | 0.72520 (13) | 0.0300 (5) | |
| N2 | 1.0553 (3) | 0.5884 (2) | 0.76701 (13) | 0.0305 (5) | |
| N3 | 1.0303 (3) | 0.2820 (3) | 0.76421 (15) | 0.0389 (6) | |
| C1 | 0.6169 (3) | 0.8495 (3) | 0.66806 (14) | 0.0267 (6) | |
| O2 | 0.1487 (3) | 0.9012 (2) | 0.84564 (14) | 0.0512 (6) | |
| C2 | 0.5325 (3) | 1.0274 (3) | 0.66902 (15) | 0.0287 (6) | |
| C3 | 0.3559 (3) | 1.0884 (3) | 0.62389 (16) | 0.0346 (7) | |
| C4 | 0.2574 (4) | 0.9727 (3) | 0.57957 (17) | 0.0385 (7) | |
| C5 | 0.3383 (3) | 0.7961 (3) | 0.58003 (15) | 0.0325 (6) | |
| C6 | 0.5159 (3) | 0.7339 (3) | 0.62232 (15) | 0.0309 (6) | |
| C7 | 0.8054 (3) | 0.7906 (3) | 0.71317 (15) | 0.0300 (6) | |
| C8 | 1.1348 (3) | 0.4159 (3) | 0.78513 (14) | 0.0274 (6) | |
| C9 | 0.5074 (4) | 0.8287 (4) | 0.9172 (2) | 0.0493 (9) | |
| C10 | 0.1671 (5) | 0.6884 (4) | 1.0067 (2) | 0.0578 (10) | |
| H1 | 0.54961 | 1.21258 | 0.73121 | 0.0570* | |
| H2 | 1.11849 | 0.67747 | 0.78122 | 0.0360* | |
| H3 | 0.30338 | 1.20764 | 0.62341 | 0.0410* | |
| H3A | 0.91417 | 0.30700 | 0.73958 | 0.0470* | |
| H3B | 1.07844 | 0.17008 | 0.77525 | 0.0470* | |
| H4 | 0.13811 | 1.01311 | 0.54976 | 0.0460* | |
| H6 | 0.56908 | 0.61567 | 0.62069 | 0.0370* | |
| H7 | 0.88039 | 0.87680 | 0.73376 | 0.0360* | |
| H9A | 0.51533 | 0.72024 | 0.89072 | 0.0740* | |
| H9B | 0.57191 | 0.80243 | 0.97422 | 0.0740* | |
| H9C | 0.57610 | 0.92693 | 0.87721 | 0.0740* | |
| H10A | 0.02145 | 0.69522 | 1.01827 | 0.0870* | |
| H10B | 0.23443 | 0.67244 | 1.06288 | 0.0870* | |
| H10C | 0.20263 | 0.58551 | 0.97788 | 0.0870* |
| Br1 | 0.0489 (2) | 0.0567 (2) | 0.0538 (2) | −0.0095 (1) | −0.0172 (1) | −0.0193 (1) |
| S1 | 0.0323 (3) | 0.0315 (3) | 0.0469 (4) | 0.0088 (2) | −0.0164 (2) | −0.0132 (2) |
| S2 | 0.0571 (4) | 0.0295 (3) | 0.0432 (4) | −0.0032 (3) | −0.0125 (3) | −0.0124 (3) |
| O1 | 0.0344 (8) | 0.0356 (8) | 0.0498 (10) | 0.0071 (7) | −0.0122 (7) | −0.0203 (7) |
| N1 | 0.0244 (8) | 0.0301 (9) | 0.0365 (10) | 0.0043 (7) | −0.0081 (7) | −0.0086 (7) |
| N2 | 0.0273 (9) | 0.0241 (8) | 0.0417 (11) | 0.0023 (7) | −0.0132 (7) | −0.0082 (7) |
| N3 | 0.0374 (10) | 0.0260 (9) | 0.0566 (14) | 0.0019 (8) | −0.0182 (9) | −0.0123 (9) |
| C1 | 0.0254 (10) | 0.0273 (10) | 0.0267 (10) | 0.0031 (8) | −0.0038 (7) | −0.0040 (8) |
| O2 | 0.0724 (13) | 0.0296 (8) | 0.0554 (12) | 0.0027 (8) | −0.0339 (10) | −0.0099 (8) |
| C2 | 0.0294 (10) | 0.0280 (10) | 0.0288 (11) | 0.0017 (8) | −0.0032 (8) | −0.0057 (8) |
| C3 | 0.0341 (11) | 0.0302 (11) | 0.0390 (13) | 0.0091 (9) | −0.0089 (9) | −0.0059 (9) |
| C4 | 0.0303 (11) | 0.0460 (13) | 0.0373 (13) | 0.0063 (10) | −0.0115 (9) | −0.0024 (10) |
| C5 | 0.0314 (10) | 0.0377 (11) | 0.0289 (11) | −0.0033 (9) | −0.0054 (8) | −0.0063 (9) |
| C6 | 0.0328 (11) | 0.0306 (10) | 0.0297 (11) | 0.0012 (8) | −0.0047 (8) | −0.0063 (9) |
| C7 | 0.0306 (11) | 0.0290 (10) | 0.0314 (11) | 0.0008 (8) | −0.0039 (8) | −0.0084 (8) |
| C8 | 0.0283 (10) | 0.0249 (10) | 0.0301 (11) | 0.0030 (8) | −0.0031 (8) | −0.0083 (8) |
| C9 | 0.0524 (16) | 0.0504 (15) | 0.0462 (16) | −0.0097 (12) | −0.0098 (12) | −0.0079 (12) |
| C10 | 0.0619 (18) | 0.0567 (17) | 0.0521 (18) | −0.0143 (14) | 0.0035 (13) | −0.0025 (14) |
| Br1—C5 | 1.898 (2) | N3—H3B | 0.8600 |
| S1—C8 | 1.698 (2) | C3—C4 | 1.383 (3) |
| S2—C10 | 1.780 (3) | N3—H3A | 0.8600 |
| S2—O2 | 1.508 (2) | C4—C5 | 1.384 (3) |
| S2—C9 | 1.776 (3) | C5—C6 | 1.373 (3) |
| O1—C2 | 1.367 (3) | C3—H3 | 0.9300 |
| N1—N2 | 1.384 (3) | C4—H4 | 0.9300 |
| N1—C7 | 1.278 (3) | C6—H6 | 0.9300 |
| O1—H1 | 0.8200 | C7—H7 | 0.9300 |
| N2—C8 | 1.338 (3) | C9—H9A | 0.9600 |
| N3—C8 | 1.324 (3) | C9—H9B | 0.9600 |
| C1—C7 | 1.449 (3) | C9—H9C | 0.9600 |
| C1—C2 | 1.405 (3) | C10—H10A | 0.9600 |
| C1—C6 | 1.404 (3) | C10—H10B | 0.9600 |
| C2—C3 | 1.385 (3) | C10—H10C | 0.9600 |
| N2—H2 | 0.8600 | ||
| C9—S2—C10 | 97.89 (14) | S1—C8—N2 | 118.69 (16) |
| O2—S2—C9 | 105.88 (12) | N2—C8—N3 | 118.41 (19) |
| O2—S2—C10 | 105.84 (12) | S1—C8—N3 | 122.90 (18) |
| N2—N1—C7 | 114.45 (19) | C2—C3—H3 | 120.00 |
| C2—O1—H1 | 110.00 | C4—C3—H3 | 120.00 |
| N1—N2—C8 | 119.44 (18) | C5—C4—H4 | 120.00 |
| C2—C1—C7 | 119.58 (19) | C3—C4—H4 | 120.00 |
| C2—C1—C6 | 118.62 (19) | C1—C6—H6 | 120.00 |
| C6—C1—C7 | 121.8 (2) | C5—C6—H6 | 120.00 |
| O1—C2—C3 | 122.0 (2) | N1—C7—H7 | 119.00 |
| C1—C2—C3 | 120.5 (2) | C1—C7—H7 | 119.00 |
| N1—N2—H2 | 120.00 | S2—C9—H9A | 109.00 |
| C8—N2—H2 | 120.00 | S2—C9—H9B | 110.00 |
| O1—C2—C1 | 117.53 (18) | S2—C9—H9C | 109.00 |
| H3A—N3—H3B | 120.00 | H9A—C9—H9B | 109.00 |
| C2—C3—C4 | 120.3 (2) | H9A—C9—H9C | 109.00 |
| C8—N3—H3B | 120.00 | H9B—C9—H9C | 109.00 |
| C8—N3—H3A | 120.00 | S2—C10—H10A | 109.00 |
| C3—C4—C5 | 119.3 (2) | S2—C10—H10B | 109.00 |
| Br1—C5—C6 | 119.57 (17) | S2—C10—H10C | 109.00 |
| Br1—C5—C4 | 118.85 (17) | H10A—C10—H10B | 109.00 |
| C4—C5—C6 | 121.6 (2) | H10A—C10—H10C | 109.00 |
| C1—C6—C5 | 119.8 (2) | H10B—C10—H10C | 109.00 |
| N1—C7—C1 | 121.2 (2) | ||
| C7—N1—N2—C8 | 178.2 (2) | C2—C1—C7—N1 | 169.6 (2) |
| N2—N1—C7—C1 | 178.29 (19) | C6—C1—C7—N1 | −10.9 (3) |
| N1—N2—C8—S1 | 178.26 (15) | O1—C2—C3—C4 | −178.3 (2) |
| N1—N2—C8—N3 | −1.7 (3) | C1—C2—C3—C4 | 1.9 (3) |
| C6—C1—C2—O1 | 178.65 (19) | C2—C3—C4—C5 | −0.7 (4) |
| C6—C1—C2—C3 | −1.5 (3) | C3—C4—C5—Br1 | −179.52 (18) |
| C7—C1—C2—O1 | −1.9 (3) | C3—C4—C5—C6 | −1.0 (4) |
| C7—C1—C2—C3 | 178.0 (2) | Br1—C5—C6—C1 | 179.90 (16) |
| C2—C1—C6—C5 | −0.1 (3) | C4—C5—C6—C1 | 1.4 (3) |
| C7—C1—C6—C5 | −179.6 (2) |
| H··· | ||||
| O1—H1···S1i | 0.82 | 2.40 | 3.1655 (17) | 157 |
| N2—H2···O2ii | 0.86 | 2.10 | 2.897 (2) | 155 |
| N3—H3 | 0.86 | 2.37 | 3.048 (2) | 136 |
| N3—H3 | 0.86 | 2.30 | 2.648 (3) | 104 |
| N3—H3 | 0.86 | 2.11 | 2.930 (3) | 160 |
| C7—H7···O1 | 0.93 | 2.44 | 2.752 (3) | 100 |
| C7—H7···O2ii | 0.93 | 2.53 | 3.315 (3) | 142 |