Literature DB >> 22346958

(E)-1-(2-Hy-droxy-5-meth-oxy-benzyl-idene)thio-semicarbazide.

Amir Adabi Ardakani, Hadi Kargar, Reza Kia, Muhammad Nawaz Tahir.   

Abstract

In the title mol-ecule, C(9)H(11)N(3)O(2)S, an intra-molecular O-H⋯N hydrogen bond generates an S(6) ring motif. In the crystal, mol-ecules are linked via pairs of N-H⋯S inter-actions, forming inversion dimers with R(2) (2)(8) ring motifs. These dimers are further linked via N-H⋯S and N-H⋯O hydrogen bonds, forming a two-dimensional network lying parallel to (100). The crystal structure is further stabilized by inter-molecular π-π inter-actions [centroid-centroid distance = 3.7972 (9) Å].

Entities:  

Year:  2012        PMID: 22346958      PMCID: PMC3275013          DOI: 10.1107/S1600536811056182

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For background to thio­semicarbazones in coordination chemistry, see: Casas et al. (2000 ▶). For their biological applications, see: Maccioni et al. (2003 ▶); Ferrari et al. (2000 ▶). For related structures, see: Kargar et al. (2010a ▶,b ▶); Adabi Ardakani et al. (2012 ▶).

Experimental

Crystal data

C9H11N3O2S M = 225.27 Monoclinic, a = 7.4878 (2) Å b = 9.9880 (2) Å c = 14.3754 (3) Å β = 91.846 (1)° V = 1074.55 (4) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 291 K 0.24 × 0.14 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.800, T max = 0.926 10176 measured reflections 2673 independent reflections 2365 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.110 S = 1.07 2673 reflections 138 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056182/su2361sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056182/su2361Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811056182/su2361Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O2SF(000) = 472
Mr = 225.27Dx = 1.392 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2750 reflections
a = 7.4878 (2) Åθ = 2.4–27.5°
b = 9.9880 (2) ŵ = 0.29 mm1
c = 14.3754 (3) ÅT = 291 K
β = 91.846 (1)°Plate, colourless
V = 1074.55 (4) Å30.24 × 0.14 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2673 independent reflections
Radiation source: fine-focus sealed tube2365 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 28.4°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.800, Tmax = 0.926k = −13→13
10176 measured reflectionsl = −17→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0594P)2 + 0.2733P] where P = (Fo2 + 2Fc2)/3
2673 reflections(Δ/σ)max = 0.001
138 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.26170 (16)0.48062 (13)0.97372 (9)0.0346 (3)
C20.24057 (17)0.58273 (14)1.03826 (10)0.0386 (3)
C30.2907 (2)0.71257 (15)1.01635 (13)0.0510 (4)
H30.27580.78121.05910.061*
C40.3626 (2)0.73967 (16)0.93147 (14)0.0573 (4)
H40.39620.82680.91750.069*
C50.3857 (2)0.63922 (17)0.86653 (12)0.0512 (4)
C60.33436 (19)0.51057 (16)0.88716 (10)0.0438 (3)
H60.34780.44290.84350.053*
C70.4842 (3)0.5753 (3)0.71703 (14)0.0797 (7)
H7A0.55740.50540.74370.120*
H7B0.54150.61240.66410.120*
H7C0.37010.53920.69780.120*
C80.21137 (17)0.34293 (13)0.99115 (9)0.0365 (3)
H80.22700.27980.94450.044*
C90.02639 (18)0.11834 (12)1.14708 (9)0.0353 (3)
N10.14624 (14)0.30443 (10)1.06812 (8)0.0349 (2)
N20.10299 (16)0.17032 (11)1.07211 (8)0.0388 (3)
H20.12550.11921.02580.047*
N30.0098 (2)0.19397 (12)1.22149 (8)0.0507 (3)
H3A0.04780.27521.22140.061*
H3B−0.03900.16201.27010.061*
O10.17090 (17)0.56061 (11)1.12351 (8)0.0514 (3)
H10.14840.48071.12920.077*
O20.4601 (2)0.67718 (16)0.78420 (11)0.0777 (4)
S1−0.04238 (6)−0.04281 (3)1.14369 (3)0.04739 (14)
U11U22U33U12U13U23
C10.0324 (6)0.0336 (6)0.0378 (6)−0.0011 (5)0.0011 (5)0.0040 (5)
C20.0356 (6)0.0346 (6)0.0455 (7)0.0003 (5)0.0019 (5)0.0011 (5)
C30.0486 (8)0.0323 (7)0.0722 (10)−0.0006 (6)0.0028 (7)−0.0008 (7)
C40.0489 (8)0.0387 (7)0.0844 (12)−0.0041 (6)0.0022 (8)0.0213 (8)
C50.0422 (7)0.0543 (9)0.0573 (9)−0.0021 (6)0.0051 (6)0.0232 (7)
C60.0430 (7)0.0474 (8)0.0411 (7)−0.0017 (6)0.0048 (5)0.0072 (6)
C70.0654 (11)0.123 (2)0.0515 (10)0.0004 (12)0.0163 (9)0.0260 (12)
C80.0411 (6)0.0329 (6)0.0356 (6)−0.0024 (5)0.0041 (5)−0.0009 (5)
C90.0440 (6)0.0293 (6)0.0326 (6)0.0004 (5)0.0021 (5)0.0016 (5)
N10.0401 (5)0.0285 (5)0.0362 (5)−0.0025 (4)0.0027 (4)0.0010 (4)
N20.0540 (6)0.0282 (5)0.0346 (5)−0.0040 (4)0.0091 (5)−0.0012 (4)
N30.0834 (9)0.0347 (6)0.0347 (6)−0.0109 (6)0.0138 (6)−0.0034 (5)
O10.0678 (7)0.0401 (5)0.0473 (6)−0.0046 (5)0.0163 (5)−0.0072 (4)
O20.0770 (9)0.0822 (10)0.0750 (9)−0.0103 (7)0.0193 (7)0.0389 (8)
S10.0754 (3)0.02908 (19)0.0382 (2)−0.00904 (14)0.01049 (17)0.00096 (12)
C1—C21.3912 (19)C7—H7A0.9600
C1—C61.4063 (18)C7—H7B0.9600
C1—C81.4499 (17)C7—H7C0.9600
C2—O11.3653 (17)C8—N11.2824 (16)
C2—C31.389 (2)C8—H80.9300
C3—C41.376 (2)C9—N31.3187 (17)
C3—H30.9300C9—N21.3415 (16)
C4—C51.385 (3)C9—S11.6901 (13)
C4—H40.9300N1—N21.3797 (14)
C5—C61.376 (2)N2—H20.8600
C5—O21.3774 (19)N3—H3A0.8600
C6—H60.9300N3—H3B0.8600
C7—O21.418 (3)O1—H10.8200
C2—C1—C6119.32 (13)H7A—C7—H7B109.5
C2—C1—C8122.98 (12)O2—C7—H7C109.5
C6—C1—C8117.70 (12)H7A—C7—H7C109.5
O1—C2—C3117.94 (13)H7B—C7—H7C109.5
O1—C2—C1122.33 (12)N1—C8—C1122.80 (12)
C3—C2—C1119.72 (13)N1—C8—H8118.6
C4—C3—C2120.06 (15)C1—C8—H8118.6
C4—C3—H3120.0N3—C9—N2118.93 (12)
C2—C3—H3120.0N3—C9—S1122.17 (10)
C3—C4—C5121.07 (14)N2—C9—S1118.89 (10)
C3—C4—H4119.5C8—N1—N2115.04 (11)
C5—C4—H4119.5C9—N2—N1121.08 (11)
C6—C5—O2124.45 (17)C9—N2—H2119.5
C6—C5—C4119.29 (14)N1—N2—H2119.5
O2—C5—C4116.26 (15)C9—N3—H3A120.0
C5—C6—C1120.53 (15)C9—N3—H3B120.0
C5—C6—H6119.7H3A—N3—H3B120.0
C1—C6—H6119.7C2—O1—H1109.5
O2—C7—H7A109.5C5—O2—C7116.83 (15)
O2—C7—H7B109.5
C6—C1—C2—O1179.97 (12)C2—C1—C6—C50.6 (2)
C8—C1—C2—O10.2 (2)C8—C1—C6—C5−179.64 (13)
C6—C1—C2—C30.2 (2)C2—C1—C8—N1−1.2 (2)
C8—C1—C2—C3−179.54 (13)C6—C1—C8—N1179.03 (12)
O1—C2—C3—C4179.62 (14)C1—C8—N1—N2178.93 (11)
C1—C2—C3—C4−0.6 (2)N3—C9—N2—N1−7.2 (2)
C2—C3—C4—C50.2 (2)S1—C9—N2—N1173.92 (10)
C3—C4—C5—C60.6 (2)C8—N1—N2—C9−177.01 (12)
C3—C4—C5—O2−179.49 (14)C6—C5—O2—C70.0 (2)
O2—C5—C6—C1179.10 (14)C4—C5—O2—C7−179.90 (16)
C4—C5—C6—C1−1.0 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.972.6844 (15)146
N2—H2···S1i0.862.613.3706 (12)148
N3—H3A···S1ii0.862.663.2706 (12)129
N3—H3B···O1iii0.862.112.9604 (17)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.972.6844 (15)146
N2—H2⋯S1i0.862.613.3706 (12)148
N3—H3A⋯S1ii0.862.663.2706 (12)129
N3—H3B⋯O1iii0.862.112.9604 (17)172

Symmetry codes: (i) ; (ii) ; (iii) .

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