Literature DB >> 26594567

Crystal structure of {[2-hy-droxy-2-(3-meth-oxy-phen-yl)cyclo-hex-yl]meth-yl}di-methyl-ammonium benzoate.

S N Sheshadri1, P Nagendra2, B P Siddaraju3, K H Hemakumar4, K Byrappa5, N K Lokanath6, S Madan Kumar7.   

Abstract

The title compound, C16H26NO2 (+)·C7H5O2 (-), is a benzoate salt of the painkiller Tramadol. The six-membered cyclo-hexane ring of the cation adopts a slightly distorted chair conformation and carries OH and 3-meth-oxy-phenyl substituents at the 2-position and a protonated methyl-aza-niumylmethyl group at the 3-position. In addition, a weak intra-molecular C-H⋯O hydrogen bond is observed in the cation. In the crystal, weak O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds link the components into chains along [010]. A C-H⋯π contact is also observed.

Entities:  

Keywords:  Tramadol; crystal structure; inter­molecular hydrogen bonds

Year:  2015        PMID: 26594567      PMCID: PMC4645060          DOI: 10.1107/S2056989015019362

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For pharmaceutical applications of Tramadol and related analgesics, see: Scott & Perry (2000 ▸). For related structures, see: Tessler & Goldberg (2004 ▸); Arman et al. (2010 ▸); Hemamalini & Fun (2010 ▸); Siddaraju et al. (2011 ▸); Lin & Zhang (2013 ▸); Smith (2014 ▸); Jasinski et al. (2015 ▸); Sun et al. (2012 ▸).

Experimental

Crystal data

C16H26NO2 +·C7H5O2 M = 385.49 Triclinic, a = 9.013 (4) Å b = 9.767 (4) Å c = 12.726 (6) Å α = 75.008 (16)° β = 89.79 (2)° γ = 76.493 (16)° V = 1050.3 (8) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.55 × 0.51 × 0.3 mm

Data collection

Rigaku Saturn724+ diffractometer Absorption correction: multi-scan (NUMABS; Rigaku 1999 ▸) T min = 0.955, T max = 0.975 11931 measured reflections 5660 independent reflections 3504 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.134 S = 1.03 5660 reflections 257 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.21 e Å−3

Data collection: CrystalClear SM Expert (Rigaku, 2011 ▸); cell refinement: CrystalClear SM Expert; data reduction: CrystalClear SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸) and Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015019362/sj5480sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015019362/sj5480Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015019362/sj5480Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015019362/sj5480fig1.tif A view of the title mol­ecule, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level and an intra­molecular hydrogen bond is drawn as a dashed line. Click here for additional data file. a . DOI: 10.1107/S2056989015019362/sj5480fig2.tif A viewed along the a axis of the crystal packing of the title compound. Hydrogen bonds are drawn as a dashed lines. CCDC reference: 1425991 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H26NO2+·C7H5O2Z = 2
Mr = 385.49F(000) = 416
Triclinic, P1Dx = 1.219 Mg m3
a = 9.013 (4) ÅMo Kα radiation, λ = 0.71075 Å
b = 9.767 (4) ÅCell parameters from 5660 reflections
c = 12.726 (6) Åθ = 3.0–29.5°
α = 75.008 (16)°µ = 0.08 mm1
β = 89.79 (2)°T = 293 K
γ = 76.493 (16)°Block, colourless
V = 1050.3 (8) Å30.55 × 0.51 × 0.3 mm
Rigaku Saturn724+ diffractometer5660 independent reflections
Radiation source: Sealed tube, Rotating Anode3504 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.029
Detector resolution: 28.5714 pixels mm-1θmax = 29.5°, θmin = 3.0°
profile data from ω–scansh = −12→11
Absorption correction: multi-scan (NUMABS; Rigaku 1999)k = −13→13
Tmin = 0.955, Tmax = 0.975l = −17→14
11931 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.134w = 1/[σ2(Fo2) + (0.0598P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
5660 reflectionsΔρmax = 0.17 e Å3
257 parametersΔρmin = −0.21 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.51600 (17)0.30154 (17)0.58415 (12)0.0418 (4)
C20.39216 (17)0.38352 (18)0.62190 (13)0.0502 (4)
H20.29410.39590.59250.060*
C30.41457 (17)0.44717 (17)0.70353 (14)0.0520 (4)
H30.33140.50320.72900.062*
C40.56018 (16)0.42788 (16)0.74757 (13)0.0448 (4)
H40.57380.47080.80290.054*
C50.68653 (15)0.34553 (14)0.71072 (11)0.0332 (3)
C60.66294 (15)0.28320 (15)0.62715 (11)0.0366 (3)
H60.74590.22910.60010.044*
C80.6071 (2)0.1648 (2)0.45646 (15)0.0697 (5)
H8A0.56880.13110.40000.104*
H8B0.66590.08290.51110.104*
H8C0.67070.22970.42580.104*
C90.84766 (14)0.31719 (13)0.76345 (10)0.0310 (3)
C110.85527 (17)0.21038 (15)0.87622 (11)0.0406 (3)
H11A0.76880.24730.91520.049*
H11B0.84510.11740.86700.049*
C121.00060 (18)0.18474 (16)0.94543 (12)0.0465 (4)
H12A1.08650.13380.91300.056*
H12B0.99230.12391.01760.056*
C131.0282 (2)0.32939 (16)0.95426 (12)0.0491 (4)
H13A0.94710.37600.99290.059*
H13B1.12430.31180.99540.059*
C141.03296 (17)0.42967 (16)0.84145 (11)0.0417 (4)
H14A1.11710.38450.80440.050*
H14B1.05120.52100.84860.050*
C150.88435 (15)0.46093 (13)0.77334 (10)0.0317 (3)
H150.80160.51000.81070.038*
C160.88662 (16)0.56049 (14)0.65994 (10)0.0358 (3)
H16A0.97090.51440.62350.043*
H16B0.79290.56880.61900.043*
C180.77644 (17)0.79335 (16)0.70698 (14)0.0508 (4)
H18A0.68050.80040.67090.076*
H18B0.79050.88960.70050.076*
H18C0.77670.74340.78260.076*
C190.9145 (2)0.79324 (17)0.54203 (12)0.0572 (5)
H19A0.99850.73950.51120.086*
H19B0.93150.88700.54100.086*
H19C0.82150.80620.50010.086*
N170.90203 (13)0.71131 (11)0.65610 (9)0.0337 (3)
H170.99760.70130.69700.040*
O70.48324 (13)0.23977 (15)0.50425 (10)0.0642 (3)
O100.96103 (10)0.26098 (10)0.69699 (8)0.0372 (2)
H100.97740.17170.71330.056*
C200.38473 (18)0.75688 (18)0.88067 (13)0.0492 (4)
H200.35980.66680.89640.059*
C210.29160 (16)0.87614 (15)0.80738 (11)0.0376 (3)
C220.33245 (18)1.00897 (17)0.78461 (12)0.0471 (4)
H220.27061.09030.73620.056*
C230.4632 (2)1.0218 (2)0.83276 (14)0.0564 (4)
H230.49021.11100.81550.068*
C240.5540 (2)0.9031 (2)0.90636 (14)0.0595 (5)
H240.64170.91210.93960.071*
C250.51482 (19)0.7706 (2)0.93080 (13)0.0597 (5)
H250.57570.69030.98090.072*
C260.15086 (16)0.86086 (15)0.75316 (12)0.0385 (3)
O270.05139 (13)0.97122 (11)0.70637 (10)0.0600 (3)
O280.14406 (12)0.73144 (11)0.75774 (9)0.0529 (3)
U11U22U33U12U13U23
C10.0387 (8)0.0477 (9)0.0414 (8)−0.0137 (7)0.0007 (7)−0.0132 (7)
C20.0321 (8)0.0561 (10)0.0601 (10)−0.0087 (7)−0.0010 (7)−0.0132 (8)
C30.0344 (8)0.0496 (9)0.0740 (12)−0.0053 (7)0.0125 (8)−0.0245 (8)
C40.0378 (8)0.0443 (9)0.0602 (10)−0.0115 (7)0.0102 (7)−0.0262 (7)
C50.0323 (7)0.0281 (7)0.0405 (8)−0.0102 (5)0.0069 (6)−0.0088 (6)
C60.0330 (7)0.0382 (7)0.0400 (8)−0.0092 (6)0.0056 (6)−0.0123 (6)
C80.0581 (11)0.0930 (15)0.0678 (12)−0.0084 (10)−0.0036 (9)−0.0474 (11)
C90.0315 (7)0.0276 (6)0.0357 (7)−0.0079 (5)0.0060 (6)−0.0110 (5)
C110.0485 (9)0.0320 (7)0.0422 (8)−0.0154 (6)0.0049 (7)−0.0066 (6)
C120.0566 (10)0.0363 (8)0.0421 (8)−0.0103 (7)−0.0034 (7)−0.0031 (6)
C130.0608 (10)0.0446 (9)0.0418 (8)−0.0145 (8)−0.0104 (8)−0.0094 (7)
C140.0459 (8)0.0378 (8)0.0459 (8)−0.0181 (7)−0.0024 (7)−0.0117 (6)
C150.0373 (7)0.0265 (6)0.0340 (7)−0.0107 (5)0.0048 (6)−0.0103 (5)
C160.0453 (8)0.0308 (7)0.0353 (7)−0.0145 (6)0.0059 (6)−0.0109 (6)
C180.0457 (9)0.0358 (8)0.0688 (11)−0.0039 (7)0.0084 (8)−0.0157 (8)
C190.0827 (13)0.0446 (9)0.0448 (9)−0.0267 (9)0.0087 (9)−0.0026 (7)
N170.0359 (6)0.0283 (6)0.0367 (6)−0.0095 (5)0.0029 (5)−0.0068 (5)
O70.0439 (7)0.0989 (10)0.0628 (7)−0.0173 (6)−0.0012 (6)−0.0441 (7)
O100.0351 (5)0.0303 (5)0.0485 (6)−0.0063 (4)0.0100 (4)−0.0159 (4)
C200.0484 (9)0.0480 (9)0.0520 (9)−0.0139 (7)0.0082 (8)−0.0130 (7)
C210.0389 (8)0.0382 (8)0.0414 (8)−0.0117 (6)0.0102 (7)−0.0181 (6)
C220.0516 (9)0.0422 (9)0.0537 (9)−0.0166 (7)0.0031 (8)−0.0189 (7)
C230.0552 (10)0.0590 (11)0.0692 (11)−0.0273 (9)0.0082 (9)−0.0298 (9)
C240.0468 (10)0.0835 (14)0.0627 (11)−0.0240 (10)0.0060 (9)−0.0373 (10)
C250.0486 (10)0.0716 (12)0.0551 (10)−0.0090 (9)−0.0020 (8)−0.0146 (9)
C260.0404 (8)0.0322 (7)0.0480 (9)−0.0109 (6)0.0092 (7)−0.0180 (6)
O270.0577 (7)0.0345 (6)0.0870 (8)−0.0044 (5)−0.0161 (7)−0.0205 (6)
O280.0441 (6)0.0321 (5)0.0852 (8)−0.0119 (5)−0.0046 (6)−0.0178 (5)
C1—C21.377 (2)C14—C151.5229 (19)
C1—C61.389 (2)C15—H150.9800
C1—O71.3739 (19)C15—C161.5204 (18)
C2—H20.9300C16—H16A0.9700
C2—C31.379 (2)C16—H16B0.9700
C3—H30.9300C16—N171.5000 (17)
C3—C41.381 (2)C18—H18A0.9600
C4—H40.9300C18—H18B0.9600
C4—C51.3881 (18)C18—H18C0.9600
C5—C61.3944 (19)C18—N171.4771 (17)
C5—C91.5359 (19)C19—H19A0.9600
C6—H60.9300C19—H19B0.9600
C8—H8A0.9600C19—H19C0.9600
C8—H8B0.9600C19—N171.4833 (18)
C8—H8C0.9600N17—H170.9800
C8—O71.4126 (19)O10—H100.8200
C9—C111.5314 (19)C20—H200.9300
C9—C151.5507 (18)C20—C211.385 (2)
C9—O101.4257 (15)C20—C251.386 (2)
C11—H11A0.9700C21—C221.389 (2)
C11—H11B0.9700C21—C261.502 (2)
C11—C121.515 (2)C22—H220.9300
C12—H12A0.9700C22—C231.376 (2)
C12—H12B0.9700C23—H230.9300
C12—C131.522 (2)C23—C241.376 (2)
C13—H13A0.9700C24—H240.9300
C13—H13B0.9700C24—C251.379 (2)
C13—C141.521 (2)C25—H250.9300
C14—H14A0.9700C26—O271.2412 (17)
C14—H14B0.9700C26—O281.2661 (17)
C2—C1—C6120.59 (14)C9—C15—H15107.9
O7—C1—C2115.75 (14)C14—C15—C9110.98 (11)
O7—C1—C6123.65 (14)C14—C15—H15107.9
C1—C2—H2120.2C16—C15—C9109.26 (10)
C1—C2—C3119.53 (14)C16—C15—C14112.67 (11)
C3—C2—H2120.2C16—C15—H15107.9
C2—C3—H3119.9C15—C16—H16A108.4
C2—C3—C4120.17 (15)C15—C16—H16B108.4
C4—C3—H3119.9H16A—C16—H16B107.5
C3—C4—H4119.4N17—C16—C15115.49 (10)
C3—C4—C5121.20 (14)N17—C16—H16A108.4
C5—C4—H4119.4N17—C16—H16B108.4
C4—C5—C6118.22 (13)H18A—C18—H18B109.5
C4—C5—C9121.36 (12)H18A—C18—H18C109.5
C6—C5—C9120.36 (12)H18B—C18—H18C109.5
C1—C6—C5120.28 (13)N17—C18—H18A109.5
C1—C6—H6119.9N17—C18—H18B109.5
C5—C6—H6119.9N17—C18—H18C109.5
H8A—C8—H8B109.5H19A—C19—H19B109.5
H8A—C8—H8C109.5H19A—C19—H19C109.5
H8B—C8—H8C109.5H19B—C19—H19C109.5
O7—C8—H8A109.5N17—C19—H19A109.5
O7—C8—H8B109.5N17—C19—H19B109.5
O7—C8—H8C109.5N17—C19—H19C109.5
C5—C9—C15111.34 (10)C16—N17—H17107.6
C11—C9—C5107.75 (10)C18—N17—C16112.99 (11)
C11—C9—C15110.47 (11)C18—N17—C19110.77 (12)
O10—C9—C5110.85 (11)C18—N17—H17107.6
O10—C9—C11111.47 (11)C19—N17—C16110.13 (10)
O10—C9—C15105.01 (10)C19—N17—H17107.6
C9—C11—H11A108.6C1—O7—C8117.87 (12)
C9—C11—H11B108.6C9—O10—H10109.5
H11A—C11—H11B107.6C21—C20—H20119.7
C12—C11—C9114.67 (12)C21—C20—C25120.58 (16)
C12—C11—H11A108.6C25—C20—H20119.7
C12—C11—H11B108.6C20—C21—C22118.47 (14)
C11—C12—H12A109.6C20—C21—C26120.42 (13)
C11—C12—H12B109.6C22—C21—C26121.10 (13)
C11—C12—C13110.42 (12)C21—C22—H22119.5
H12A—C12—H12B108.1C23—C22—C21120.94 (15)
C13—C12—H12A109.6C23—C22—H22119.5
C13—C12—H12B109.6C22—C23—H23119.9
C12—C13—H13A109.6C24—C23—C22120.10 (16)
C12—C13—H13B109.6C24—C23—H23119.9
H13A—C13—H13B108.1C23—C24—H24120.1
C14—C13—C12110.39 (12)C23—C24—C25119.87 (16)
C14—C13—H13A109.6C25—C24—H24120.1
C14—C13—H13B109.6C20—C25—H25120.0
C13—C14—H14A109.3C24—C25—C20120.03 (16)
C13—C14—H14B109.3C24—C25—H25120.0
C13—C14—C15111.70 (12)O27—C26—C21120.10 (13)
H14A—C14—H14B107.9O27—C26—O28124.15 (14)
C15—C14—H14A109.3O28—C26—C21115.75 (13)
C15—C14—H14B109.3
C1—C2—C3—C4−0.4 (2)C12—C13—C14—C1559.28 (17)
C2—C1—C6—C51.2 (2)C13—C14—C15—C9−56.84 (15)
C2—C1—O7—C8174.83 (15)C13—C14—C15—C16−179.74 (12)
C2—C3—C4—C50.4 (2)C14—C15—C16—N17−63.19 (16)
C3—C4—C5—C60.4 (2)C15—C9—C11—C12−51.00 (15)
C3—C4—C5—C9−176.79 (13)C15—C16—N17—C18−59.79 (16)
C4—C5—C6—C1−1.23 (19)C15—C16—N17—C19175.76 (12)
C4—C5—C9—C1171.47 (15)O7—C1—C2—C3178.80 (14)
C4—C5—C9—C15−49.81 (16)O7—C1—C6—C5−177.88 (13)
C4—C5—C9—O10−166.32 (11)O10—C9—C11—C1265.34 (15)
C5—C9—C11—C12−172.82 (11)O10—C9—C15—C14−68.97 (13)
C5—C9—C15—C14171.00 (10)O10—C9—C15—C1655.87 (13)
C5—C9—C15—C16−64.15 (13)C20—C21—C22—C230.7 (2)
C6—C1—C2—C3−0.3 (2)C20—C21—C26—O27164.70 (14)
C6—C1—O7—C8−6.0 (2)C20—C21—C26—O28−16.30 (19)
C6—C5—C9—C11−105.71 (14)C21—C20—C25—C24−1.2 (2)
C6—C5—C9—C15133.01 (13)C21—C22—C23—C24−1.4 (2)
C6—C5—C9—O1016.51 (16)C22—C21—C26—O27−16.0 (2)
C9—C5—C6—C1176.03 (12)C22—C21—C26—O28163.00 (13)
C9—C11—C12—C1353.62 (16)C22—C23—C24—C250.8 (2)
C9—C15—C16—N17172.96 (11)C23—C24—C25—C200.5 (2)
C11—C9—C15—C1451.32 (14)C25—C20—C21—C220.6 (2)
C11—C9—C15—C16176.17 (11)C25—C20—C21—C26179.94 (13)
C11—C12—C13—C14−56.17 (17)C26—C21—C22—C23−178.64 (13)
D—H···AD—HH···AD···AD—H···A
C6—H6···O100.932.422.775 (2)102
C14—H14B···O28i0.972.413.251 (2)144
N17—H17···O28i0.981.652.6120 (18)165
O10—H10···O27ii0.821.942.7269 (17)161
C23—H23···Cg1iii0.932.833.684 (3)153
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C1C6 benzene ring.

DHA DHHA D A DHA
C6H6O100.932.422.775(2)102
C14H14BO28i 0.972.413.251(2)144
N17H17O28i 0.981.652.6120(18)165
O10H10O27ii 0.821.942.7269(17)161
C23H23Cg1iii 0.932.833.684(3)153

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

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Journal:  Drugs       Date:  2000-07       Impact factor: 9.546

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Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30

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Journal:  Acta Crystallogr C Struct Chem       Date:  2014-02-13       Impact factor: 1.172

5.  Benzoic acid-2-{(E)-[(E)-2-(2-pyridyl-methyl-idene)hydrazin-1-yl-idene]meth-yl}pyridine (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

6.  Tramadol hydro-chloride-benzoic acid (1/1).

Authors:  B P Siddaraju; Jerry P Jasinski; James A Golen; H S Yathirajan; C R Raju
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-17

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  4-(Cyclo-propane-carboxamido)-benzoic acid.

Authors:  Zhong-Qiang Sun; Zhen-Ya Ding; Zhi-Yu Shao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-29

9.  3,5-Bis[(pyridin-4-yl)meth-oxy]benzoic acid.

Authors:  Hong Lin; Yi-Ping Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-12
  9 in total

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