Literature DB >> 21588739

(2E)-N'-[(E)-4-Chloro-benzyl-idene]-3-phenyl-prop-2-enohydrazide monohydrate.

Samir A Carvalho, Edson F da Silva, Carlos A M Fraga, Solange M S V Wardell, James L Wardell, Edward R T Tiekink.   

Abstract

The conformation about each of the imine and n class="Chemical">ethene bonds in the title hydrazide hydrate, C(16)H(13)ClN(2)O·H(2)O, is E. The hydrazide mol-ecule is approximately planar (r.m.s. deviation of the 20 non-H atoms = 0.172 Å). The most significant twist occurs about the ethene bond [C-C=C-C = 164.1 (5)°] and the dihedral angle formed between the benzene rings is 5.3 (2)°]. In the crystal, the presence of N-H⋯O(w) and O-H⋯O(c) (× 2; w = water and c = carbon-yl) hydrogen bonds leads to a supra-molecular array in the bc plane.

Entities:  

Year:  2010        PMID: 21588739      PMCID: PMC3007965          DOI: 10.1107/S160053681003388X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the resurgence of tuberculosis; see Bezerra et al. (2006 ▶); Chung & Shin (2007 ▶); Naz et al. (2006 ▶). For background to the biological activity of n class="Chemical">trans-cinnamic acid derivatives, see: Carvalho et al. (2008 ▶). For background to the development of hydrazide derivatives for biological evaluation, see: Carvalho et al. (2008 ▶, 2009 ▶).

Experimental

Crystal data

C16H13ClN2O·n class="Chemical">H2O M = 302.75 Monoclinic, a = 34.078 (3) Å b = 5.9824 (6) Å c = 7.2912 (6) Å β = 95.674 (3)° V = 1479.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 120 K 0.10 × 0.08 × 0.03 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.492, T max = 1.000 8532 measured reflections 2572 independent reflections 2016 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.084 wR(F 2) = 0.196 S = 1.05 2572 reflections 199 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.37 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681003388X/hb5594sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003388X/hb5594Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13ClN2O·H2OF(000) = 632
Mr = 302.75Dx = 1.359 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 19841 reflections
a = 34.078 (3) Åθ = 2.9–27.5°
b = 5.9824 (6) ŵ = 0.26 mm1
c = 7.2912 (6) ÅT = 120 K
β = 95.674 (3)°Block, colourless
V = 1479.2 (2) Å30.10 × 0.08 × 0.03 mm
Z = 4
Nonius KappaCCD diffractometer2572 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode2016 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.066
Detector resolution: 9.091 pixels mm-1θmax = 25.0°, θmin = 3.0°
φ and ω scansh = −40→39
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −7→7
Tmin = 0.492, Tmax = 1.000l = −8→8
8532 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.084Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.196H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0421P)2 + 8.0472P] where P = (Fo2 + 2Fc2)/3
2572 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.36 e Å3
4 restraintsΔρmin = −0.37 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.02800 (3)−0.2977 (2)0.18849 (16)0.0315 (4)
O10.28173 (10)−0.0171 (6)0.2229 (5)0.0330 (9)
N10.20834 (11)0.1523 (7)0.1857 (5)0.0280 (10)
N20.24086 (12)0.2830 (8)0.1657 (6)0.0299 (10)
H2N0.2398 (16)0.420 (3)0.129 (7)0.036*
C10.07011 (13)−0.1339 (9)0.1827 (6)0.0240 (11)
C20.10625 (13)−0.2220 (9)0.2528 (6)0.0238 (10)
H20.1074−0.36620.30770.029*
C30.14047 (13)−0.1007 (8)0.2430 (6)0.0235 (11)
H30.1652−0.16150.29060.028*
C40.13869 (13)0.1134 (8)0.1623 (6)0.0221 (10)
C50.10192 (13)0.2008 (9)0.0959 (6)0.0239 (10)
H50.10040.34580.04250.029*
C60.06758 (13)0.0787 (9)0.1071 (6)0.0267 (11)
H60.04270.14010.06350.032*
C70.17447 (14)0.2426 (9)0.1444 (6)0.0260 (11)
H70.17270.39290.10230.031*
C80.27682 (14)0.1859 (9)0.1837 (6)0.0282 (11)
C90.30969 (14)0.3385 (9)0.1550 (6)0.0290 (11)
H90.30460.49280.13290.035*
C100.34638 (14)0.2621 (10)0.1598 (6)0.0296 (12)
H100.35030.10790.18690.036*
C110.38178 (14)0.3936 (9)0.1270 (6)0.0295 (12)
C120.41917 (14)0.3067 (10)0.1809 (7)0.0339 (12)
H120.42150.16320.23670.041*
C130.45299 (15)0.4277 (11)0.1540 (7)0.0388 (14)
H130.47830.36880.19350.047*
C140.44946 (15)0.6344 (11)0.0691 (7)0.0372 (14)
H140.47250.71630.04820.045*
C150.41234 (15)0.7235 (10)0.0140 (7)0.0342 (13)
H150.41020.8662−0.04330.041*
C160.37871 (14)0.6055 (9)0.0424 (6)0.0305 (12)
H160.35350.66700.00490.037*
O1W0.23087 (11)0.6983 (6)−0.0131 (5)0.0349 (9)
H1W0.2424 (14)0.797 (8)0.055 (6)0.052*
H2W0.2444 (13)0.668 (9)−0.101 (5)0.052*
U11U22U33U12U13U23
Cl0.0216 (6)0.0401 (8)0.0329 (6)−0.0052 (6)0.0028 (5)0.0042 (6)
O10.0311 (19)0.031 (2)0.037 (2)−0.0030 (17)0.0035 (15)0.0053 (17)
N10.025 (2)0.036 (3)0.023 (2)−0.0076 (19)0.0022 (16)0.0007 (19)
N20.025 (2)0.033 (3)0.032 (2)−0.006 (2)0.0062 (17)0.002 (2)
C10.019 (2)0.033 (3)0.021 (2)−0.004 (2)0.0050 (18)0.001 (2)
C20.025 (2)0.030 (3)0.016 (2)−0.002 (2)0.0004 (18)−0.001 (2)
C30.022 (2)0.024 (3)0.024 (2)0.002 (2)0.0024 (19)−0.004 (2)
C40.022 (2)0.026 (3)0.019 (2)0.000 (2)0.0047 (18)0.001 (2)
C50.028 (2)0.024 (3)0.020 (2)0.003 (2)0.0014 (18)−0.004 (2)
C60.021 (2)0.032 (3)0.028 (3)0.005 (2)0.0063 (19)−0.001 (2)
C70.027 (3)0.025 (3)0.027 (2)−0.001 (2)0.006 (2)0.001 (2)
C80.028 (3)0.034 (3)0.022 (2)−0.005 (2)0.0005 (19)−0.004 (2)
C90.027 (3)0.030 (3)0.029 (2)−0.008 (2)0.003 (2)0.002 (2)
C100.029 (3)0.040 (3)0.019 (2)0.000 (2)−0.0007 (19)0.001 (2)
C110.022 (2)0.041 (3)0.025 (2)0.001 (2)0.0002 (19)−0.001 (2)
C120.030 (3)0.043 (3)0.029 (3)−0.004 (3)0.004 (2)0.000 (3)
C130.027 (3)0.062 (4)0.027 (3)0.003 (3)0.001 (2)−0.006 (3)
C140.027 (3)0.059 (4)0.027 (3)−0.012 (3)0.006 (2)−0.002 (3)
C150.038 (3)0.039 (3)0.027 (3)−0.008 (3)0.008 (2)−0.004 (2)
C160.025 (3)0.043 (3)0.022 (2)−0.005 (2)−0.0036 (19)0.000 (2)
O1W0.040 (2)0.031 (2)0.034 (2)−0.0018 (18)0.0060 (16)−0.0059 (17)
Cl—C11.742 (5)C8—C91.476 (7)
O1—C81.256 (6)C9—C101.328 (7)
N1—C71.283 (6)C9—H90.9500
N1—N21.376 (6)C10—C111.479 (7)
N2—C81.351 (6)C10—H100.9500
N2—H2N0.86 (2)C11—C121.396 (7)
C1—C61.385 (7)C11—C161.409 (8)
C1—C21.390 (6)C12—C131.392 (7)
C2—C31.381 (6)C12—H120.9500
C2—H20.9500C13—C141.382 (8)
C3—C41.408 (7)C13—H130.9500
C3—H30.9500C14—C151.395 (7)
C4—C51.399 (6)C14—H140.9500
C4—C71.461 (6)C15—C161.379 (7)
C5—C61.389 (7)C15—H150.9500
C5—H50.9500C16—H160.9500
C6—H60.9500O1W—H1W0.84 (5)
C7—H70.9500O1W—H2W0.85 (4)
C7—N1—N2116.8 (4)N2—C8—C9114.5 (5)
C8—N2—N1118.5 (4)C10—C9—C8120.6 (5)
C8—N2—H2N117 (4)C10—C9—H9119.7
N1—N2—H2N124 (4)C8—C9—H9119.7
C6—C1—C2120.8 (4)C9—C10—C11126.4 (5)
C6—C1—Cl120.5 (4)C9—C10—H10116.8
C2—C1—Cl118.7 (4)C11—C10—H10116.8
C3—C2—C1120.2 (5)C12—C11—C16119.0 (5)
C3—C2—H2119.9C12—C11—C10119.5 (5)
C1—C2—H2119.9C16—C11—C10121.5 (4)
C2—C3—C4119.8 (4)C13—C12—C11120.8 (6)
C2—C3—H3120.1C13—C12—H12119.6
C4—C3—H3120.1C11—C12—H12119.6
C5—C4—C3119.0 (4)C14—C13—C12119.5 (5)
C5—C4—C7119.9 (4)C14—C13—H13120.3
C3—C4—C7121.1 (4)C12—C13—H13120.3
C6—C5—C4120.9 (5)C13—C14—C15120.5 (5)
C6—C5—H5119.5C13—C14—H14119.8
C4—C5—H5119.5C15—C14—H14119.8
C1—C6—C5119.1 (4)C16—C15—C14120.3 (5)
C1—C6—H6120.4C16—C15—H15119.9
C5—C6—H6120.4C14—C15—H15119.9
N1—C7—C4119.7 (5)C15—C16—C11120.0 (5)
N1—C7—H7120.1C15—C16—H16120.0
C4—C7—H7120.1C11—C16—H16120.0
O1—C8—N2122.5 (5)H1W—O1W—H2W110 (3)
O1—C8—C9123.0 (5)
C7—N1—N2—C8−171.2 (4)N1—N2—C8—C9178.4 (4)
C6—C1—C2—C3−1.9 (7)O1—C8—C9—C103.8 (7)
Cl—C1—C2—C3177.1 (3)N2—C8—C9—C10−176.7 (4)
C1—C2—C3—C40.2 (7)C8—C9—C10—C11177.7 (4)
C2—C3—C4—C51.0 (6)C9—C10—C11—C12164.1 (5)
C2—C3—C4—C7−177.9 (4)C9—C10—C11—C16−15.9 (8)
C3—C4—C5—C6−0.7 (6)C16—C11—C12—C130.8 (7)
C7—C4—C5—C6178.3 (4)C10—C11—C12—C13−179.2 (4)
C2—C1—C6—C52.3 (7)C11—C12—C13—C14−1.4 (8)
Cl—C1—C6—C5−176.7 (3)C12—C13—C14—C151.3 (8)
C4—C5—C6—C1−1.0 (7)C13—C14—C15—C16−0.5 (8)
N2—N1—C7—C4180.0 (4)C14—C15—C16—C11−0.1 (7)
C5—C4—C7—N1−172.0 (4)C12—C11—C16—C150.0 (7)
C3—C4—C7—N17.0 (7)C10—C11—C16—C15180.0 (4)
N1—N2—C8—O1−2.0 (7)
D—H···AD—HH···AD···AD—H···A
N2—H2n···O1w0.86 (2)1.97 (3)2.811 (6)165 (5)
O1w—H1w···O1i0.84 (5)2.05 (5)2.877 (5)166 (4)
O1w—H2w···O1ii0.85 (4)2.10 (4)2.923 (5)165 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2n⋯O1w0.86 (2)1.97 (3)2.811 (6)165 (5)
O1w—H1w⋯O1i0.84 (5)2.05 (5)2.877 (5)166 (4)
O1w—H2w⋯O1ii0.85 (4)2.10 (4)2.923 (5)165 (5)

Symmetry codes: (i) ; (ii) .

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