Literature DB >> 22798906

(2E)-N'-[(E)-Benzyl-idene]-3-phenyl-prop-2-enohydrazide from synchrotron radiation.

Samir A Carvalho, Edson F da Silva, Carlos A M Fraga, Solange M S V Wardell, James L Wardell, Edward R T Tiekink.   

Abstract

In the title compound, C(16)H(14)N(2)O, the dihedral angle between the phenyl rings is 25.48 (12)°. An E conformation is found for each of the imine [1.269 (3) Å] and ethyl-ene [1.313 (3) Å] bonds. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, leading to zigzag chains along [010]. Supra-molecular layers in the ab plane are formed, whereby the chains are linked by C-H⋯N and C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22798906      PMCID: PMC3394041          DOI: 10.1107/S1600536812028504

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of (E)-cinnamoylhydrazone derivatives against Chagas’ disease, see: Carvalho et al. (2012b ▶). For background to Chagas’ disease, see: Rassi et al. (2010 ▶); Soeiro & de Castro (2011 ▶). For related structural studies, see: Carvalho et al. (2009 ▶, 2010a ▶,b ▶, 2012a ▶).

Experimental

Crystal data

C16H14N2O M = 250.30 Orthorhombic, a = 11.473 (19) Å b = 7.507 (13) Å c = 30.50 (5) Å V = 2627 (8) Å3 Z = 8 Synchrotron radiation λ = 0.6943 Å μ = 0.04 mm−1 T = 120 K 0.12 × 0.03 × 0.02 mm

Data collection

Bruker SMART APEXII CCD diffractometer 14542 measured reflections 1876 independent reflections 1442 reflections with I > 2σ(I) R int = 0.084 θmax = 22.7°

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.140 S = 1.05 1876 reflections 175 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028504/hb6861sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028504/hb6861Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028504/hb6861Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N2OF(000) = 1056
Mr = 250.30Dx = 1.266 Mg m3
Orthorhombic, PbcaSynchrotron radiation, λ = 0.6943 Å
Hall symbol: -P 2ybcCell parameters from 996 reflections
a = 11.473 (19) Åθ = 3.2–25.1°
b = 7.507 (13) ŵ = 0.04 mm1
c = 30.50 (5) ÅT = 120 K
V = 2627 (8) Å3Needle, colourless
Z = 80.12 × 0.03 × 0.02 mm
Bruker SMART APEXII CCD diffractometer1442 reflections with I > 2σ(I)
Radiation source: Daresbury SRS station 9.8Rint = 0.084
Silicon 111 monochromatorθmax = 22.7°, θmin = 2.6°
fine–slice ω scansh = −12→12
14542 measured reflectionsk = −8→8
1876 independent reflectionsl = −33→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0776P)2 + 0.9415P] where P = (Fo2 + 2Fc2)/3
1876 reflections(Δ/σ)max < 0.001
175 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.38302 (13)0.0885 (2)0.60236 (5)0.0381 (5)
N10.23795 (16)0.2057 (3)0.66603 (6)0.0349 (5)
N20.25029 (17)0.2886 (3)0.62606 (6)0.0371 (5)
H2N0.209 (2)0.385 (2)0.6201 (8)0.045*
C10.14001 (19)0.2034 (3)0.73493 (7)0.0338 (6)
C20.21991 (19)0.0947 (3)0.75586 (7)0.0373 (6)
H20.28860.05880.74090.045*
C30.2010 (2)0.0384 (3)0.79800 (7)0.0403 (6)
H30.2554−0.03920.81170.048*
C40.1040 (2)0.0931 (3)0.82057 (8)0.0413 (7)
H40.09240.05590.85000.050*
C50.0236 (2)0.2021 (4)0.80048 (8)0.0412 (7)
H5−0.04420.23890.81590.049*
C60.0418 (2)0.2580 (3)0.75771 (8)0.0386 (6)
H6−0.01340.33410.74390.046*
C70.15938 (19)0.2706 (3)0.69056 (7)0.0353 (6)
H70.11210.36490.67990.042*
C80.3245 (2)0.2246 (3)0.59613 (7)0.0357 (6)
C90.32566 (19)0.3248 (3)0.55473 (7)0.0344 (6)
H90.27850.42820.55180.041*
C100.3909 (2)0.2735 (3)0.52168 (7)0.0374 (6)
H100.43990.17360.52680.045*
C110.39690 (19)0.3527 (3)0.47781 (7)0.0366 (6)
C120.3407 (2)0.5093 (4)0.46697 (8)0.0447 (7)
H120.29720.57100.48870.054*
C130.3468 (2)0.5770 (4)0.42517 (9)0.0501 (7)
H130.30790.68510.41810.060*
C140.4090 (2)0.4885 (4)0.39369 (8)0.0505 (7)
H140.41340.53540.36480.061*
C150.4645 (2)0.3332 (4)0.40364 (8)0.0498 (7)
H150.50690.27160.38160.060*
C160.4593 (2)0.2651 (4)0.44565 (8)0.0437 (7)
H160.49880.15740.45250.052*
U11U22U33U12U13U23
O10.0345 (9)0.0435 (10)0.0362 (9)0.0027 (8)0.0002 (7)0.0019 (8)
N10.0314 (10)0.0474 (13)0.0258 (10)−0.0017 (9)−0.0002 (8)0.0017 (9)
N20.0373 (11)0.0464 (14)0.0276 (10)0.0004 (9)0.0001 (9)0.0051 (9)
C10.0332 (12)0.0437 (14)0.0246 (12)−0.0079 (11)−0.0008 (10)−0.0013 (10)
C20.0323 (13)0.0443 (14)0.0353 (13)0.0027 (11)0.0020 (10)−0.0037 (11)
C30.0409 (14)0.0453 (16)0.0345 (13)0.0002 (12)−0.0052 (11)0.0027 (11)
C40.0493 (16)0.0497 (16)0.0249 (12)−0.0115 (13)−0.0027 (11)0.0007 (11)
C50.0339 (13)0.0536 (17)0.0362 (14)−0.0068 (12)0.0071 (11)−0.0074 (12)
C60.0351 (13)0.0428 (14)0.0379 (14)−0.0004 (11)−0.0053 (11)−0.0002 (11)
C70.0324 (13)0.0423 (15)0.0311 (13)−0.0003 (11)−0.0039 (10)−0.0005 (10)
C80.0314 (12)0.0457 (16)0.0301 (13)−0.0062 (12)−0.0013 (10)−0.0023 (11)
C90.0322 (12)0.0411 (14)0.0297 (12)0.0003 (10)−0.0021 (10)0.0020 (10)
C100.0353 (13)0.0439 (15)0.0330 (13)−0.0003 (11)−0.0017 (11)0.0015 (11)
C110.0315 (12)0.0504 (16)0.0279 (12)−0.0045 (12)−0.0002 (10)0.0028 (11)
C120.0419 (14)0.0579 (17)0.0344 (14)0.0029 (13)0.0071 (11)0.0013 (13)
C130.0423 (15)0.0629 (19)0.0449 (16)0.0034 (13)−0.0023 (12)0.0127 (14)
C140.0398 (14)0.081 (2)0.0312 (14)−0.0062 (14)−0.0015 (11)0.0134 (14)
C150.0394 (14)0.077 (2)0.0332 (14)0.0000 (14)0.0081 (11)−0.0064 (14)
C160.0389 (14)0.0530 (16)0.0391 (15)0.0035 (12)0.0008 (11)0.0019 (12)
O1—C81.238 (3)C7—H70.9500
N1—C71.269 (3)C8—C91.470 (4)
N1—N21.376 (3)C9—C101.313 (3)
N2—C81.338 (3)C9—H90.9500
N2—H2N0.886 (10)C10—C111.466 (4)
C1—C21.383 (3)C10—H100.9500
C1—C61.386 (4)C11—C121.381 (4)
C1—C71.461 (4)C11—C161.381 (4)
C2—C31.370 (4)C12—C131.374 (4)
C2—H20.9500C12—H120.9500
C3—C41.371 (4)C13—C141.368 (4)
C3—H30.9500C13—H130.9500
C4—C51.377 (4)C14—C151.363 (4)
C4—H40.9500C14—H140.9500
C5—C61.386 (4)C15—C161.381 (4)
C5—H50.9500C15—H150.9500
C6—H60.9500C16—H160.9500
C7—N1—N2115.0 (2)O1—C8—C9123.4 (2)
C8—N2—N1120.5 (2)N2—C8—C9114.1 (2)
C8—N2—H2N119.7 (17)C10—C9—C8120.9 (2)
N1—N2—H2N119.8 (17)C10—C9—H9119.5
C2—C1—C6118.8 (2)C8—C9—H9119.5
C2—C1—C7122.0 (2)C9—C10—C11127.5 (3)
C6—C1—C7119.1 (2)C9—C10—H10116.3
C3—C2—C1120.6 (2)C11—C10—H10116.3
C3—C2—H2119.7C12—C11—C16118.5 (2)
C1—C2—H2119.7C12—C11—C10122.8 (2)
C2—C3—C4120.5 (2)C16—C11—C10118.7 (3)
C2—C3—H3119.8C13—C12—C11120.9 (2)
C4—C3—H3119.8C13—C12—H12119.6
C3—C4—C5119.9 (2)C11—C12—H12119.6
C3—C4—H4120.1C14—C13—C12119.8 (3)
C5—C4—H4120.1C14—C13—H13120.1
C4—C5—C6119.8 (2)C12—C13—H13120.1
C4—C5—H5120.1C15—C14—C13120.2 (3)
C6—C5—H5120.1C15—C14—H14119.9
C1—C6—C5120.3 (2)C13—C14—H14119.9
C1—C6—H6119.8C14—C15—C16120.2 (3)
C5—C6—H6119.8C14—C15—H15119.9
N1—C7—C1121.5 (2)C16—C15—H15119.9
N1—C7—H7119.3C15—C16—C11120.3 (3)
C1—C7—H7119.3C15—C16—H16119.8
O1—C8—N2122.5 (2)C11—C16—H16119.8
C7—N1—N2—C8−175.3 (2)O1—C8—C9—C10−0.3 (4)
C6—C1—C2—C31.6 (4)N2—C8—C9—C10−177.4 (2)
C7—C1—C2—C3178.0 (2)C8—C9—C10—C11176.4 (2)
C1—C2—C3—C4−1.9 (4)C9—C10—C11—C127.2 (4)
C2—C3—C4—C51.6 (4)C9—C10—C11—C16−171.3 (2)
C3—C4—C5—C6−0.9 (4)C16—C11—C12—C13−0.2 (4)
C2—C1—C6—C5−0.9 (3)C10—C11—C12—C13−178.7 (2)
C7—C1—C6—C5−177.4 (2)C11—C12—C13—C140.2 (4)
C4—C5—C6—C10.6 (4)C12—C13—C14—C150.2 (4)
N2—N1—C7—C1−176.63 (19)C13—C14—C15—C16−0.6 (4)
C2—C1—C7—N114.0 (3)C14—C15—C16—C110.6 (4)
C6—C1—C7—N1−169.6 (2)C12—C11—C16—C15−0.2 (4)
N1—N2—C8—O11.4 (3)C10—C11—C16—C15178.4 (2)
N1—N2—C8—C9178.50 (19)
D—H···AD—HH···AD···AD—H···A
N2—H2n···O1i0.88 (2)1.93 (2)2.816 (6)175 (2)
C5—H5···N1ii0.952.573.433 (7)151
C3—H3···Cg1iii0.952.923.618 (7)131
C6—H6···Cg1iv0.952.753.645 (7)158
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2n⋯O1i 0.88 (2)1.93 (2)2.816 (6)175 (2)
C5—H5⋯N1ii 0.952.573.433 (7)151
C3—H3⋯Cg1iii 0.952.923.618 (7)131
C6—H6⋯Cg1iv 0.952.753.645 (7)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Chagas disease.

Authors:  Anis Rassi; Anis Rassi; José Antonio Marin-Neto
Journal:  Lancet       Date:  2010-04-17       Impact factor: 79.321

3.  N'-[(2E)-3-Phenyl-prop-2-eno-yl]benzo-hydrazide.

Authors:  Samir A Carvalho; Edson F da Silva; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-18

4.  (2E)-N'-Benzoyl-3-(4-nitro-phen-yl)prop-2-enohydrazide.

Authors:  Samir A Carvalho; Edson F da Silva; Marcus V N de Souza; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-16

5.  (2E)-N'-[(E)-4-Chloro-benzyl-idene]-3-phenyl-prop-2-enohydrazide monohydrate.

Authors:  Samir A Carvalho; Edson F da Silva; Carlos A M Fraga; Solange M S V Wardell; James L Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28

6.  Screening of Potential anti-Trypanosoma cruzi Candidates: In Vitro and In Vivo Studies.

Authors:  Maria de Nazaré C Soeiro; Solange Lisboa de Castro
Journal:  Open Med Chem J       Date:  2011-03-09

7.  (2E)-N'-[(E)-2-Hy-droxy-benzyl-idene]-3-phenyl-prop-2-enohydrazide.

Authors:  Samir A Carvalho; Edson F da Silva; Carlos A M Fraga; Solange M S V Wardell; James L Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  7 in total
  2 in total

1.  (2E)-N'-[(E)-2-Hy-droxy-benzyl-idene]-3-phenyl-prop-2-enohydrazide.

Authors:  Samir A Carvalho; Edson F da Silva; Carlos A M Fraga; Solange M S V Wardell; James L Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

2.  Antiprotozoal activity of (E)-cinnamic N-acylhydrazone derivatives.

Authors:  Samir Aquino Carvalho; Marcel Kaiser; Reto Brun; Edson Ferreira da Silva; Carlos Alberto Manssour Fraga
Journal:  Molecules       Date:  2014-12-05       Impact factor: 4.411

  2 in total

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