| Literature DB >> 21588569 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
In the title salt, C(6)H(9)N(2) (+)·C(8)H(5)O(4) (-), the hydrogen phthalate anion is essentially planar, with a maximum deviation of 0.011 (2) Å. In the crystal structure, the protonated N atom of the pyridine ring and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. In the hydrogen phthalate anion, there is a very strong, almost symmetric, intra-molecular O-H⋯O hydrogen bond, generating an S(7) motif [O⋯O = 2.382 (3) Å]. Furthermore, these two molecular motif rings are connected by a bifurcated N-H⋯(O,O) hydrogen-bonded motif R(1) (2)(4), forming a supra-molecular ribbon along the b axis. The crystal structure is further stabilized by π-π inter-actions between the cations and anions [centroid-centroid distance = 3.6999 (10) Å].Entities:
Year: 2010 PMID: 21588569 PMCID: PMC3008103 DOI: 10.1107/S160053681003000X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C8H5O4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3124 reflections |
| θ = 2.6–28.6° | |
| µ = 0.10 mm−1 | |
| β = 101.540 (2)° | Block, colourless |
| 0.47 × 0.33 × 0.20 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3049 independent reflections |
| Radiation source: fine-focus sealed tube | 2054 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 12332 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3049 reflections | (Δ/σ)max < 0.001 |
| 197 parameters | Δρmax = 0.19 e Å−3 |
| 0 restraints | Δρmin = −0.14 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.22365 (18) | −0.0844 (2) | 0.56803 (13) | 0.1122 (6) | |
| O2 | 0.11271 (15) | −0.09799 (18) | 0.41687 (11) | 0.0907 (5) | |
| O3 | 0.39091 (17) | 0.0516 (2) | 0.66089 (11) | 0.1042 (6) | |
| O4 | 0.51382 (17) | 0.2270 (2) | 0.63733 (13) | 0.1129 (6) | |
| C1 | 0.24378 (17) | 0.09471 (19) | 0.33146 (12) | 0.0560 (4) | |
| H1A | 0.1762 | 0.0456 | 0.2956 | 0.067* | |
| C2 | 0.30478 (17) | 0.1928 (2) | 0.28048 (13) | 0.0609 (5) | |
| H2A | 0.2777 | 0.2107 | 0.2116 | 0.073* | |
| C3 | 0.40493 (17) | 0.2635 (2) | 0.33145 (15) | 0.0689 (5) | |
| H3A | 0.4481 | 0.3277 | 0.2973 | 0.083* | |
| C4 | 0.44221 (17) | 0.2395 (2) | 0.43406 (16) | 0.0675 (5) | |
| H4A | 0.5104 | 0.2894 | 0.4682 | 0.081* | |
| C5 | 0.38123 (16) | 0.14284 (19) | 0.48854 (12) | 0.0547 (4) | |
| C6 | 0.27973 (15) | 0.06614 (17) | 0.43513 (12) | 0.0508 (4) | |
| C7 | 0.4338 (2) | 0.1418 (3) | 0.60205 (16) | 0.0719 (6) | |
| C8 | 0.1997 (2) | −0.0461 (2) | 0.47582 (15) | 0.0644 (5) | |
| N1 | 0.55034 (14) | 0.21351 (16) | 0.02651 (10) | 0.0539 (4) | |
| N2 | 0.46340 (18) | 0.2514 (2) | −0.14144 (14) | 0.0712 (5) | |
| C9 | 0.54553 (16) | 0.18327 (18) | −0.07217 (12) | 0.0532 (4) | |
| C10 | 0.62974 (17) | 0.0798 (2) | −0.09620 (14) | 0.0611 (5) | |
| H10A | 0.6290 | 0.0552 | −0.1635 | 0.073* | |
| C11 | 0.71156 (17) | 0.0164 (2) | −0.02130 (14) | 0.0619 (5) | |
| H11A | 0.7671 | −0.0511 | −0.0383 | 0.074* | |
| C12 | 0.71554 (16) | 0.04912 (19) | 0.08173 (13) | 0.0573 (4) | |
| C13 | 0.63244 (16) | 0.14845 (19) | 0.10155 (13) | 0.0581 (4) | |
| H13A | 0.6316 | 0.1729 | 0.1686 | 0.070* | |
| C14 | 0.80669 (19) | −0.0225 (3) | 0.16415 (16) | 0.0798 (6) | |
| H14A | 0.7953 | 0.0133 | 0.2289 | 0.120* | |
| H14B | 0.8858 | 0.0039 | 0.1553 | 0.120* | |
| H14C | 0.7975 | −0.1307 | 0.1611 | 0.120* | |
| H1N1 | 0.4931 (17) | 0.279 (2) | 0.0425 (14) | 0.067 (6)* | |
| H2N2 | 0.404 (2) | 0.312 (3) | −0.1211 (17) | 0.086 (7)* | |
| H1N2 | 0.466 (2) | 0.227 (3) | −0.206 (2) | 0.096 (8)* | |
| H1O1 | 0.308 (2) | −0.022 (3) | 0.6119 (18) | 0.100 (7)* |
| O1 | 0.1250 (15) | 0.1378 (15) | 0.0725 (10) | −0.0338 (12) | 0.0163 (10) | 0.0395 (10) |
| O2 | 0.1126 (12) | 0.0943 (11) | 0.0705 (9) | −0.0427 (9) | 0.0308 (9) | −0.0029 (8) |
| O3 | 0.1091 (13) | 0.1526 (16) | 0.0486 (8) | 0.0056 (12) | 0.0099 (9) | 0.0157 (10) |
| O4 | 0.1112 (14) | 0.1306 (15) | 0.0794 (11) | −0.0074 (12) | −0.0228 (10) | −0.0167 (10) |
| C1 | 0.0660 (11) | 0.0552 (9) | 0.0472 (9) | −0.0033 (8) | 0.0125 (8) | −0.0049 (7) |
| C2 | 0.0717 (12) | 0.0679 (11) | 0.0459 (9) | 0.0020 (9) | 0.0182 (8) | 0.0024 (8) |
| C3 | 0.0639 (12) | 0.0761 (12) | 0.0709 (12) | −0.0040 (10) | 0.0236 (10) | 0.0115 (10) |
| C4 | 0.0502 (10) | 0.0771 (12) | 0.0731 (13) | −0.0024 (9) | 0.0072 (9) | −0.0031 (10) |
| C5 | 0.0560 (10) | 0.0579 (9) | 0.0500 (9) | 0.0147 (8) | 0.0100 (8) | −0.0032 (7) |
| C6 | 0.0617 (10) | 0.0460 (8) | 0.0478 (9) | 0.0080 (7) | 0.0185 (8) | −0.0019 (7) |
| C7 | 0.0707 (13) | 0.0821 (14) | 0.0587 (11) | 0.0237 (11) | 0.0026 (10) | −0.0087 (10) |
| C8 | 0.0841 (14) | 0.0567 (10) | 0.0575 (11) | −0.0010 (9) | 0.0265 (10) | 0.0015 (8) |
| N1 | 0.0587 (9) | 0.0533 (8) | 0.0517 (8) | 0.0012 (7) | 0.0158 (7) | −0.0046 (6) |
| N2 | 0.0868 (13) | 0.0727 (11) | 0.0517 (10) | 0.0110 (9) | 0.0079 (9) | −0.0033 (8) |
| C9 | 0.0635 (11) | 0.0470 (8) | 0.0502 (9) | −0.0094 (8) | 0.0140 (8) | −0.0026 (7) |
| C10 | 0.0753 (12) | 0.0588 (10) | 0.0532 (10) | −0.0047 (9) | 0.0225 (9) | −0.0102 (8) |
| C11 | 0.0617 (11) | 0.0564 (10) | 0.0710 (11) | 0.0005 (8) | 0.0216 (9) | −0.0101 (9) |
| C12 | 0.0543 (10) | 0.0569 (9) | 0.0613 (10) | −0.0037 (8) | 0.0133 (8) | −0.0035 (8) |
| C13 | 0.0642 (11) | 0.0639 (10) | 0.0468 (9) | −0.0019 (9) | 0.0124 (8) | −0.0036 (8) |
| C14 | 0.0699 (13) | 0.0880 (14) | 0.0781 (13) | 0.0120 (11) | 0.0064 (11) | −0.0013 (11) |
| O1—C8 | 1.263 (2) | N1—C9 | 1.345 (2) |
| O1—H1O1 | 1.16 (3) | N1—C13 | 1.359 (2) |
| O2—C8 | 1.227 (2) | N1—H1N1 | 0.93 (2) |
| O3—C7 | 1.286 (3) | N2—C9 | 1.325 (2) |
| O3—H1O1 | 1.22 (3) | N2—H2N2 | 0.95 (2) |
| O4—C7 | 1.203 (3) | N2—H1N2 | 0.90 (3) |
| C1—C2 | 1.376 (2) | C9—C10 | 1.407 (3) |
| C1—C6 | 1.396 (2) | C10—C11 | 1.350 (3) |
| C1—H1A | 0.9300 | C10—H10A | 0.9300 |
| C2—C3 | 1.359 (3) | C11—C12 | 1.409 (2) |
| C2—H2A | 0.9300 | C11—H11A | 0.9300 |
| C3—C4 | 1.378 (3) | C12—C13 | 1.355 (2) |
| C3—H3A | 0.9300 | C12—C14 | 1.499 (3) |
| C4—C5 | 1.397 (3) | C13—H13A | 0.9300 |
| C4—H4A | 0.9300 | C14—H14A | 0.9600 |
| C5—C6 | 1.406 (2) | C14—H14B | 0.9600 |
| C5—C7 | 1.525 (3) | C14—H14C | 0.9600 |
| C6—C8 | 1.520 (3) | ||
| C8—O1—H1O1 | 111.6 (12) | C9—N1—H1N1 | 117.5 (11) |
| C7—O3—H1O1 | 110.1 (11) | C13—N1—H1N1 | 120.1 (11) |
| C2—C1—C6 | 122.40 (17) | C9—N2—H2N2 | 119.9 (13) |
| C2—C1—H1A | 118.8 | C9—N2—H1N2 | 114.5 (15) |
| C6—C1—H1A | 118.8 | H2N2—N2—H1N2 | 125 (2) |
| C3—C2—C1 | 119.53 (17) | N2—C9—N1 | 119.25 (17) |
| C3—C2—H2A | 120.2 | N2—C9—C10 | 123.33 (17) |
| C1—C2—H2A | 120.2 | N1—C9—C10 | 117.42 (16) |
| C2—C3—C4 | 119.66 (18) | C11—C10—C9 | 119.81 (16) |
| C2—C3—H3A | 120.2 | C11—C10—H10A | 120.1 |
| C4—C3—H3A | 120.2 | C9—C10—H10A | 120.1 |
| C3—C4—C5 | 122.31 (18) | C10—C11—C12 | 122.15 (17) |
| C3—C4—H4A | 118.8 | C10—C11—H11A | 118.9 |
| C5—C4—H4A | 118.8 | C12—C11—H11A | 118.9 |
| C4—C5—C6 | 117.98 (16) | C13—C12—C11 | 116.12 (16) |
| C4—C5—C7 | 113.14 (18) | C13—C12—C14 | 122.30 (17) |
| C6—C5—C7 | 128.82 (17) | C11—C12—C14 | 121.58 (17) |
| C1—C6—C5 | 118.08 (16) | C12—C13—N1 | 122.04 (16) |
| C1—C6—C8 | 113.62 (16) | C12—C13—H13A | 119.0 |
| C5—C6—C8 | 128.29 (16) | N1—C13—H13A | 119.0 |
| O4—C7—O3 | 119.6 (2) | C12—C14—H14A | 109.5 |
| O4—C7—C5 | 120.4 (2) | C12—C14—H14B | 109.5 |
| O3—C7—C5 | 120.0 (2) | H14A—C14—H14B | 109.5 |
| O2—C8—O1 | 121.58 (19) | C12—C14—H14C | 109.5 |
| O2—C8—C6 | 118.33 (16) | H14A—C14—H14C | 109.5 |
| O1—C8—C6 | 120.09 (19) | H14B—C14—H14C | 109.5 |
| C9—N1—C13 | 122.45 (16) | ||
| C6—C1—C2—C3 | 1.1 (3) | C1—C6—C8—O2 | −1.1 (2) |
| C1—C2—C3—C4 | −1.9 (3) | C5—C6—C8—O2 | 178.03 (17) |
| C2—C3—C4—C5 | 0.7 (3) | C1—C6—C8—O1 | 178.51 (19) |
| C3—C4—C5—C6 | 1.2 (3) | C5—C6—C8—O1 | −2.3 (3) |
| C3—C4—C5—C7 | −176.18 (17) | C13—N1—C9—N2 | −179.69 (16) |
| C2—C1—C6—C5 | 0.8 (3) | C13—N1—C9—C10 | 0.1 (2) |
| C2—C1—C6—C8 | −179.89 (16) | N2—C9—C10—C11 | 179.23 (17) |
| C4—C5—C6—C1 | −1.9 (2) | N1—C9—C10—C11 | −0.5 (3) |
| C7—C5—C6—C1 | 175.00 (16) | C9—C10—C11—C12 | 0.6 (3) |
| C4—C5—C6—C8 | 178.91 (16) | C10—C11—C12—C13 | −0.1 (3) |
| C7—C5—C6—C8 | −4.1 (3) | C10—C11—C12—C14 | 179.80 (18) |
| C4—C5—C7—O4 | 5.3 (3) | C11—C12—C13—N1 | −0.3 (3) |
| C6—C5—C7—O4 | −171.79 (19) | C14—C12—C13—N1 | 179.74 (17) |
| C4—C5—C7—O3 | −176.07 (19) | C9—N1—C13—C12 | 0.4 (3) |
| C6—C5—C7—O3 | 6.9 (3) |
| H··· | ||||
| N1—H1N1···O2i | 0.928 (19) | 1.786 (19) | 2.713 (2) | 175.7 (17) |
| N2—H2N2···O1i | 0.95 (2) | 1.97 (2) | 2.907 (3) | 173 (2) |
| N2—H1N2···O3ii | 0.90 (3) | 2.39 (3) | 3.161 (2) | 143 (2) |
| N2—H1N2···O4ii | 0.90 (3) | 2.28 (3) | 3.151 (3) | 162 (2) |
| O1—H1O1···O3 | 1.16 (2) | 1.22 (2) | 2.382 (3) | 175 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.928 (19) | 1.786 (19) | 2.713 (2) | 175.7 (17) |
| N2—H2 | 0.95 (2) | 1.97 (2) | 2.907 (3) | 173 (2) |
| N2—H1 | 0.90 (3) | 2.39 (3) | 3.161 (2) | 143 (2) |
| N2—H1 | 0.90 (3) | 2.28 (3) | 3.151 (3) | 162 (2) |
| O1—H1 | 1.16 (2) | 1.22 (2) | 2.382 (3) | 175 (2) |
Symmetry codes: (i) ; (ii) .