Literature DB >> 21588569

2-Amino-5-methyl-pyridinium 2-carb-oxy-benzoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(6)H(9)N(2) (+)·C(8)H(5)O(4) (-), the hydrogen phthalate anion is essentially planar, with a maximum deviation of 0.011 (2) Å. In the crystal structure, the protonated N atom of the pyridine ring and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. In the hydrogen phthalate anion, there is a very strong, almost symmetric, intra-molecular O-H⋯O hydrogen bond, generating an S(7) motif [O⋯O = 2.382 (3) Å]. Furthermore, these two molecular motif rings are connected by a bifurcated N-H⋯(O,O) hydrogen-bonded motif R(1) (2)(4), forming a supra-molecular ribbon along the b axis. The crystal structure is further stabilized by π-π inter-actions between the cations and anions [centroid-centroid distance = 3.6999 (10) Å].

Entities:  

Year:  2010        PMID: 21588569      PMCID: PMC3008103          DOI: 10.1107/S160053681003000X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of phthalic acid, see: Nowacki & Jaggi (1957 ▶); Küppers (1981 ▶); Ermer (1981 ▶). For the crystal structures of hydrogen phthalates, see: Jessen (1990 ▶); Jin et al. (2003 ▶); Küppers (1978 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For reference bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C6H9N2C8H5O4 M = 274.27 Monoclinic, a = 11.3853 (2) Å b = 8.8203 (2) Å c = 13.4617 (3) Å β = 101.540 (2)° V = 1324.52 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.47 × 0.33 × 0.20 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.953, T max = 0.980 12332 measured reflections 3049 independent reflections 2054 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.136 S = 1.03 3049 reflections 197 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681003000X/wn2402sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003000X/wn2402Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C8H5O4F(000) = 576
Mr = 274.27Dx = 1.375 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3124 reflections
a = 11.3853 (2) Åθ = 2.6–28.6°
b = 8.8203 (2) ŵ = 0.10 mm1
c = 13.4617 (3) ÅT = 296 K
β = 101.540 (2)°Block, colourless
V = 1324.52 (5) Å30.47 × 0.33 × 0.20 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3049 independent reflections
Radiation source: fine-focus sealed tube2054 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 27.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.953, Tmax = 0.980k = −11→11
12332 measured reflectionsl = −17→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0585P)2 + 0.230P] where P = (Fo2 + 2Fc2)/3
3049 reflections(Δ/σ)max < 0.001
197 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.22365 (18)−0.0844 (2)0.56803 (13)0.1122 (6)
O20.11271 (15)−0.09799 (18)0.41687 (11)0.0907 (5)
O30.39091 (17)0.0516 (2)0.66089 (11)0.1042 (6)
O40.51382 (17)0.2270 (2)0.63733 (13)0.1129 (6)
C10.24378 (17)0.09471 (19)0.33146 (12)0.0560 (4)
H1A0.17620.04560.29560.067*
C20.30478 (17)0.1928 (2)0.28048 (13)0.0609 (5)
H2A0.27770.21070.21160.073*
C30.40493 (17)0.2635 (2)0.33145 (15)0.0689 (5)
H3A0.44810.32770.29730.083*
C40.44221 (17)0.2395 (2)0.43406 (16)0.0675 (5)
H4A0.51040.28940.46820.081*
C50.38123 (16)0.14284 (19)0.48854 (12)0.0547 (4)
C60.27973 (15)0.06614 (17)0.43513 (12)0.0508 (4)
C70.4338 (2)0.1418 (3)0.60205 (16)0.0719 (6)
C80.1997 (2)−0.0461 (2)0.47582 (15)0.0644 (5)
N10.55034 (14)0.21351 (16)0.02651 (10)0.0539 (4)
N20.46340 (18)0.2514 (2)−0.14144 (14)0.0712 (5)
C90.54553 (16)0.18327 (18)−0.07217 (12)0.0532 (4)
C100.62974 (17)0.0798 (2)−0.09620 (14)0.0611 (5)
H10A0.62900.0552−0.16350.073*
C110.71156 (17)0.0164 (2)−0.02130 (14)0.0619 (5)
H11A0.7671−0.0511−0.03830.074*
C120.71554 (16)0.04912 (19)0.08173 (13)0.0573 (4)
C130.63244 (16)0.14845 (19)0.10155 (13)0.0581 (4)
H13A0.63160.17290.16860.070*
C140.80669 (19)−0.0225 (3)0.16415 (16)0.0798 (6)
H14A0.79530.01330.22890.120*
H14B0.88580.00390.15530.120*
H14C0.7975−0.13070.16110.120*
H1N10.4931 (17)0.279 (2)0.0425 (14)0.067 (6)*
H2N20.404 (2)0.312 (3)−0.1211 (17)0.086 (7)*
H1N20.466 (2)0.227 (3)−0.206 (2)0.096 (8)*
H1O10.308 (2)−0.022 (3)0.6119 (18)0.100 (7)*
U11U22U33U12U13U23
O10.1250 (15)0.1378 (15)0.0725 (10)−0.0338 (12)0.0163 (10)0.0395 (10)
O20.1126 (12)0.0943 (11)0.0705 (9)−0.0427 (9)0.0308 (9)−0.0029 (8)
O30.1091 (13)0.1526 (16)0.0486 (8)0.0056 (12)0.0099 (9)0.0157 (10)
O40.1112 (14)0.1306 (15)0.0794 (11)−0.0074 (12)−0.0228 (10)−0.0167 (10)
C10.0660 (11)0.0552 (9)0.0472 (9)−0.0033 (8)0.0125 (8)−0.0049 (7)
C20.0717 (12)0.0679 (11)0.0459 (9)0.0020 (9)0.0182 (8)0.0024 (8)
C30.0639 (12)0.0761 (12)0.0709 (12)−0.0040 (10)0.0236 (10)0.0115 (10)
C40.0502 (10)0.0771 (12)0.0731 (13)−0.0024 (9)0.0072 (9)−0.0031 (10)
C50.0560 (10)0.0579 (9)0.0500 (9)0.0147 (8)0.0100 (8)−0.0032 (7)
C60.0617 (10)0.0460 (8)0.0478 (9)0.0080 (7)0.0185 (8)−0.0019 (7)
C70.0707 (13)0.0821 (14)0.0587 (11)0.0237 (11)0.0026 (10)−0.0087 (10)
C80.0841 (14)0.0567 (10)0.0575 (11)−0.0010 (9)0.0265 (10)0.0015 (8)
N10.0587 (9)0.0533 (8)0.0517 (8)0.0012 (7)0.0158 (7)−0.0046 (6)
N20.0868 (13)0.0727 (11)0.0517 (10)0.0110 (9)0.0079 (9)−0.0033 (8)
C90.0635 (11)0.0470 (8)0.0502 (9)−0.0094 (8)0.0140 (8)−0.0026 (7)
C100.0753 (12)0.0588 (10)0.0532 (10)−0.0047 (9)0.0225 (9)−0.0102 (8)
C110.0617 (11)0.0564 (10)0.0710 (11)0.0005 (8)0.0216 (9)−0.0101 (9)
C120.0543 (10)0.0569 (9)0.0613 (10)−0.0037 (8)0.0133 (8)−0.0035 (8)
C130.0642 (11)0.0639 (10)0.0468 (9)−0.0019 (9)0.0124 (8)−0.0036 (8)
C140.0699 (13)0.0880 (14)0.0781 (13)0.0120 (11)0.0064 (11)−0.0013 (11)
O1—C81.263 (2)N1—C91.345 (2)
O1—H1O11.16 (3)N1—C131.359 (2)
O2—C81.227 (2)N1—H1N10.93 (2)
O3—C71.286 (3)N2—C91.325 (2)
O3—H1O11.22 (3)N2—H2N20.95 (2)
O4—C71.203 (3)N2—H1N20.90 (3)
C1—C21.376 (2)C9—C101.407 (3)
C1—C61.396 (2)C10—C111.350 (3)
C1—H1A0.9300C10—H10A0.9300
C2—C31.359 (3)C11—C121.409 (2)
C2—H2A0.9300C11—H11A0.9300
C3—C41.378 (3)C12—C131.355 (2)
C3—H3A0.9300C12—C141.499 (3)
C4—C51.397 (3)C13—H13A0.9300
C4—H4A0.9300C14—H14A0.9600
C5—C61.406 (2)C14—H14B0.9600
C5—C71.525 (3)C14—H14C0.9600
C6—C81.520 (3)
C8—O1—H1O1111.6 (12)C9—N1—H1N1117.5 (11)
C7—O3—H1O1110.1 (11)C13—N1—H1N1120.1 (11)
C2—C1—C6122.40 (17)C9—N2—H2N2119.9 (13)
C2—C1—H1A118.8C9—N2—H1N2114.5 (15)
C6—C1—H1A118.8H2N2—N2—H1N2125 (2)
C3—C2—C1119.53 (17)N2—C9—N1119.25 (17)
C3—C2—H2A120.2N2—C9—C10123.33 (17)
C1—C2—H2A120.2N1—C9—C10117.42 (16)
C2—C3—C4119.66 (18)C11—C10—C9119.81 (16)
C2—C3—H3A120.2C11—C10—H10A120.1
C4—C3—H3A120.2C9—C10—H10A120.1
C3—C4—C5122.31 (18)C10—C11—C12122.15 (17)
C3—C4—H4A118.8C10—C11—H11A118.9
C5—C4—H4A118.8C12—C11—H11A118.9
C4—C5—C6117.98 (16)C13—C12—C11116.12 (16)
C4—C5—C7113.14 (18)C13—C12—C14122.30 (17)
C6—C5—C7128.82 (17)C11—C12—C14121.58 (17)
C1—C6—C5118.08 (16)C12—C13—N1122.04 (16)
C1—C6—C8113.62 (16)C12—C13—H13A119.0
C5—C6—C8128.29 (16)N1—C13—H13A119.0
O4—C7—O3119.6 (2)C12—C14—H14A109.5
O4—C7—C5120.4 (2)C12—C14—H14B109.5
O3—C7—C5120.0 (2)H14A—C14—H14B109.5
O2—C8—O1121.58 (19)C12—C14—H14C109.5
O2—C8—C6118.33 (16)H14A—C14—H14C109.5
O1—C8—C6120.09 (19)H14B—C14—H14C109.5
C9—N1—C13122.45 (16)
C6—C1—C2—C31.1 (3)C1—C6—C8—O2−1.1 (2)
C1—C2—C3—C4−1.9 (3)C5—C6—C8—O2178.03 (17)
C2—C3—C4—C50.7 (3)C1—C6—C8—O1178.51 (19)
C3—C4—C5—C61.2 (3)C5—C6—C8—O1−2.3 (3)
C3—C4—C5—C7−176.18 (17)C13—N1—C9—N2−179.69 (16)
C2—C1—C6—C50.8 (3)C13—N1—C9—C100.1 (2)
C2—C1—C6—C8−179.89 (16)N2—C9—C10—C11179.23 (17)
C4—C5—C6—C1−1.9 (2)N1—C9—C10—C11−0.5 (3)
C7—C5—C6—C1175.00 (16)C9—C10—C11—C120.6 (3)
C4—C5—C6—C8178.91 (16)C10—C11—C12—C13−0.1 (3)
C7—C5—C6—C8−4.1 (3)C10—C11—C12—C14179.80 (18)
C4—C5—C7—O45.3 (3)C11—C12—C13—N1−0.3 (3)
C6—C5—C7—O4−171.79 (19)C14—C12—C13—N1179.74 (17)
C4—C5—C7—O3−176.07 (19)C9—N1—C13—C120.4 (3)
C6—C5—C7—O36.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O2i0.928 (19)1.786 (19)2.713 (2)175.7 (17)
N2—H2N2···O1i0.95 (2)1.97 (2)2.907 (3)173 (2)
N2—H1N2···O3ii0.90 (3)2.39 (3)3.161 (2)143 (2)
N2—H1N2···O4ii0.90 (3)2.28 (3)3.151 (3)162 (2)
O1—H1O1···O31.16 (2)1.22 (2)2.382 (3)175 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O2i0.928 (19)1.786 (19)2.713 (2)175.7 (17)
N2—H2N2⋯O1i0.95 (2)1.97 (2)2.907 (3)173 (2)
N2—H1N2⋯O3ii0.90 (3)2.39 (3)3.161 (2)143 (2)
N2—H1N2⋯O4ii0.90 (3)2.28 (3)3.151 (3)162 (2)
O1—H1O1⋯O31.16 (2)1.22 (2)2.382 (3)175 (2)

Symmetry codes: (i) ; (ii) .

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1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

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3.  Crystal structure of the 1:2:2 adduct of piperazine, o-phthalic acid and water.

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  4 in total
  3 in total

1.  2-Amino-6-methyl-pyridinium 2-carb-oxy-benzoate.

Authors:  Madhukar Hemamalini; Ibrahim Abdul Razak; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

2.  Tetra-methyl-ammonium hydrogen terephthalate.

Authors:  Leila Dolatyari; Samad Shoghpour Bayraq; Sara Sharifi; Ali Ramazani; Ali Morsali; Hadi Amiri Rudbari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26

3.  2-Amino-5-methyl-pyridinium dibromo-iodate.

Authors:  Salim F Haddad; Basem F Ali; Rawhi Al-Far
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-25
  3 in total

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