Literature DB >> 22058994

2-Amino-6-methyl-pyridinium 2-carb-oxy-benzoate.

Madhukar Hemamalini1, Ibrahim Abdul Razak, Hoong-Kun Fun.   

Abstract

In the title mol-ecular salt, C(6)H(9)N(2) (+)·C(8)H(5)O(4) (-), an intra-molecular O-H⋯O hydrogen bond occurs within the anion, thereby generating an S(7) ring, which may correlate with the fact that both the carb-oxy-lic acid and carboxyl-ate groups are almost coplanar with their attached rings [dihedral angles = 2.9 (3) and 5.2 (3)°, respectively]. In the crystal, each cation is linked to its adjacent anion by two N-H⋯O hydrogen bonds; the dihedral angle between the pyridine and benzene rings is 2.22 (10)°. The ion pairs are linked by further N-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 22058994      PMCID: PMC3200597          DOI: 10.1107/S1600536811033174

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Navarro Ranninger et al. (1985 ▶); Luque et al. (1997 ▶); Jin et al. (2000 ▶); Schuckmann et al. (1978 ▶); Küppers et al. (1985 ▶); Jessen (1990 ▶); Hemamalini & Fun (2010 ▶); Quah et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C6H9N2 +·C8H5O4 M = 274.27 Triclinic, a = 7.473 (2) Å b = 8.386 (3) Å c = 11.818 (4) Å α = 97.401 (6)° β = 102.940 (7)° γ = 109.616 (6)° V = 662.9 (4) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 1.00 × 0.20 × 0.10 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.905, T max = 0.990 12166 measured reflections 3706 independent reflections 2219 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.190 S = 1.05 3706 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033174/hb6359sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033174/hb6359Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033174/hb6359Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C8H5O4Z = 2
Mr = 274.27F(000) = 288
Triclinic, P1Dx = 1.374 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.473 (2) ÅCell parameters from 3645 reflections
b = 8.386 (3) Åθ = 2.6–27.4°
c = 11.818 (4) ŵ = 0.10 mm1
α = 97.401 (6)°T = 296 K
β = 102.940 (7)°Needle, colourless
γ = 109.616 (6)°1.00 × 0.20 × 0.10 mm
V = 662.9 (4) Å3
Bruker APEXII DUO CCD diffractometer3706 independent reflections
Radiation source: fine-focus sealed tube2219 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 29.9°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.905, Tmax = 0.990k = −11→11
12166 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.190H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.1052P)2 + 0.0321P] where P = (Fo2 + 2Fc2)/3
3706 reflections(Δ/σ)max < 0.001
194 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3997 (3)0.99186 (18)0.64341 (12)0.0720 (5)
H1O10.36520.89640.59510.108*
O20.4150 (3)1.09584 (17)0.82518 (13)0.0727 (5)
O30.3231 (2)0.71890 (18)0.51427 (12)0.0682 (4)
O40.2170 (2)0.44177 (18)0.51346 (12)0.0694 (4)
N10.2619 (2)0.33871 (18)0.29978 (13)0.0452 (3)
N20.3912 (3)0.6236 (2)0.28428 (16)0.0562 (4)
C10.3333 (2)0.4560 (2)0.23665 (14)0.0441 (4)
C20.3430 (3)0.3937 (2)0.12220 (15)0.0504 (4)
H2A0.39310.47070.07660.060*
C30.2783 (3)0.2199 (3)0.07971 (17)0.0574 (5)
H3A0.28230.17820.00390.069*
C40.2057 (3)0.1023 (3)0.14768 (18)0.0584 (5)
H4A0.1623−0.01640.11740.070*
C50.1989 (3)0.1630 (2)0.25911 (17)0.0503 (4)
C60.1328 (4)0.0531 (3)0.3429 (2)0.0694 (6)
H6A0.0575−0.06470.29960.104*
H6B0.05160.09580.38080.104*
H6C0.24650.05750.40230.104*
C70.2521 (3)0.7860 (2)0.87715 (15)0.0481 (4)
H7A0.28750.89120.92990.058*
C80.1716 (3)0.6332 (3)0.91302 (16)0.0539 (4)
H8A0.15410.63640.98860.065*
C90.1182 (3)0.4775 (3)0.83617 (17)0.0561 (5)
H9A0.06260.37420.85890.067*
C100.1472 (3)0.4744 (2)0.72467 (16)0.0511 (4)
H10A0.11060.36780.67330.061*
C110.2297 (2)0.6265 (2)0.68645 (13)0.0419 (4)
C120.2586 (3)0.5937 (2)0.56344 (15)0.0481 (4)
C130.2820 (2)0.7880 (2)0.76533 (14)0.0424 (4)
C140.3712 (3)0.9700 (2)0.74459 (16)0.0498 (4)
H1N10.251 (3)0.383 (3)0.378 (2)0.068 (6)*
H1N20.454 (4)0.707 (3)0.243 (2)0.075 (7)*
H2N20.394 (3)0.663 (3)0.361 (2)0.074 (7)*
U11U22U33U12U13U23
O10.1160 (13)0.0466 (8)0.0533 (8)0.0208 (7)0.0380 (8)0.0130 (6)
O20.1115 (13)0.0458 (8)0.0560 (8)0.0212 (8)0.0330 (8)0.0025 (6)
O30.0998 (11)0.0543 (8)0.0468 (8)0.0175 (7)0.0337 (7)0.0086 (6)
O40.1065 (12)0.0497 (8)0.0519 (8)0.0250 (8)0.0338 (8)0.0029 (6)
N10.0491 (8)0.0417 (8)0.0408 (7)0.0147 (6)0.0123 (6)0.0028 (6)
N20.0740 (10)0.0417 (8)0.0501 (9)0.0160 (7)0.0239 (8)0.0053 (7)
C10.0449 (8)0.0456 (9)0.0404 (8)0.0185 (7)0.0096 (6)0.0052 (7)
C20.0558 (10)0.0596 (11)0.0411 (9)0.0285 (8)0.0149 (7)0.0089 (8)
C30.0618 (11)0.0663 (12)0.0447 (9)0.0328 (9)0.0114 (8)−0.0023 (8)
C40.0616 (11)0.0504 (10)0.0579 (11)0.0235 (8)0.0119 (9)−0.0037 (8)
C50.0488 (9)0.0428 (9)0.0540 (10)0.0153 (7)0.0118 (7)0.0038 (7)
C60.0795 (14)0.0504 (11)0.0794 (15)0.0201 (10)0.0301 (11)0.0171 (10)
C70.0554 (10)0.0511 (10)0.0409 (9)0.0231 (8)0.0168 (7)0.0065 (7)
C80.0629 (11)0.0627 (12)0.0449 (9)0.0269 (9)0.0250 (8)0.0165 (8)
C90.0638 (11)0.0508 (10)0.0538 (11)0.0150 (8)0.0236 (8)0.0184 (8)
C100.0577 (10)0.0441 (9)0.0453 (9)0.0130 (7)0.0149 (7)0.0065 (7)
C110.0411 (8)0.0473 (9)0.0355 (8)0.0165 (6)0.0096 (6)0.0062 (6)
C120.0519 (9)0.0511 (10)0.0378 (8)0.0168 (7)0.0120 (7)0.0063 (7)
C130.0442 (8)0.0451 (9)0.0382 (8)0.0183 (7)0.0114 (6)0.0072 (7)
C140.0596 (10)0.0451 (9)0.0452 (9)0.0190 (7)0.0171 (7)0.0097 (7)
O1—C141.286 (2)C4—H4A0.9300
O1—H1O10.8434C5—C61.491 (3)
O2—C141.223 (2)C6—H6A0.9600
O3—C121.271 (2)C6—H6B0.9600
O4—C121.236 (2)C6—H6C0.9600
N1—C11.350 (2)C7—C81.386 (3)
N1—C51.369 (2)C7—C131.390 (2)
N1—H1N10.99 (3)C7—H7A0.9300
N2—C11.326 (2)C8—C91.367 (3)
N2—H1N20.95 (3)C8—H8A0.9300
N2—H2N20.92 (3)C9—C101.381 (3)
C1—C21.413 (2)C9—H9A0.9300
C2—C31.356 (3)C10—C111.398 (2)
C2—H2A0.9300C10—H10A0.9300
C3—C41.397 (3)C11—C131.418 (2)
C3—H3A0.9300C11—C121.521 (2)
C4—C51.368 (3)C13—C141.524 (3)
C14—O1—H1O1111.8H6A—C6—H6C109.5
C1—N1—C5123.64 (16)H6B—C6—H6C109.5
C1—N1—H1N1117.4 (13)C8—C7—C13122.48 (17)
C5—N1—H1N1118.9 (13)C8—C7—H7A118.8
C1—N2—H1N2119.1 (15)C13—C7—H7A118.8
C1—N2—H2N2122.3 (15)C9—C8—C7119.37 (17)
H1N2—N2—H2N2118 (2)C9—C8—H8A120.3
N2—C1—N1118.97 (16)C7—C8—H8A120.3
N2—C1—C2122.93 (17)C8—C9—C10119.76 (17)
N1—C1—C2118.09 (15)C8—C9—H9A120.1
C3—C2—C1119.05 (18)C10—C9—H9A120.1
C3—C2—H2A120.5C9—C10—C11122.13 (17)
C1—C2—H2A120.5C9—C10—H10A118.9
C2—C3—C4121.27 (18)C11—C10—H10A118.9
C2—C3—H3A119.4C10—C11—C13118.15 (15)
C4—C3—H3A119.4C10—C11—C12113.54 (15)
C5—C4—C3119.58 (17)C13—C11—C12128.27 (15)
C5—C4—H4A120.2O4—C12—O3121.50 (17)
C3—C4—H4A120.2O4—C12—C11117.68 (15)
C4—C5—N1118.35 (17)O3—C12—C11120.82 (16)
C4—C5—C6125.27 (18)C7—C13—C11118.09 (15)
N1—C5—C6116.36 (17)C7—C13—C14113.65 (15)
C5—C6—H6A109.5C11—C13—C14128.25 (15)
C5—C6—H6B109.5O2—C14—O1120.10 (17)
H6A—C6—H6B109.5O2—C14—C13119.35 (16)
C5—C6—H6C109.5O1—C14—C13120.55 (16)
C5—N1—C1—N2−179.76 (16)C10—C11—C12—O4−3.4 (2)
C5—N1—C1—C20.1 (2)C13—C11—C12—O4174.11 (17)
N2—C1—C2—C3−179.19 (17)C10—C11—C12—O3176.56 (16)
N1—C1—C2—C30.9 (2)C13—C11—C12—O3−5.9 (3)
C1—C2—C3—C4−1.1 (3)C8—C7—C13—C11−0.8 (3)
C2—C3—C4—C50.2 (3)C8—C7—C13—C14179.70 (16)
C3—C4—C5—N10.8 (3)C10—C11—C13—C71.3 (2)
C3—C4—C5—C6−177.48 (18)C12—C11—C13—C7−176.07 (15)
C1—N1—C5—C4−1.0 (3)C10—C11—C13—C14−179.27 (16)
C1—N1—C5—C6177.44 (16)C12—C11—C13—C143.3 (3)
C13—C7—C8—C9−0.2 (3)C7—C13—C14—O22.5 (3)
C7—C8—C9—C100.8 (3)C11—C13—C14—O2−176.88 (17)
C8—C9—C10—C11−0.2 (3)C7—C13—C14—O1−177.23 (17)
C9—C10—C11—C13−0.9 (3)C11—C13—C14—O13.4 (3)
C9—C10—C11—C12176.92 (17)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O30.841.552.393 (2)174
N1—H1N1···O40.98 (2)1.71 (2)2.692 (2)175 (2)
N2—H1N2···O2i0.96 (3)1.99 (2)2.940 (3)172 (2)
N2—H2N2···O30.92 (2)2.04 (2)2.936 (3)165 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O30.841.552.393 (2)174
N1—H1N1⋯O40.98 (2)1.71 (2)2.692 (2)175 (2)
N2—H1N2⋯O2i0.96 (3)1.99 (2)2.940 (3)172 (2)
N2—H2N2⋯O30.92 (2)2.04 (2)2.936 (3)165 (2)

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Amino-5-bromo-pyridinium 2-carb-oxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

3.  2-Amino-5-chloro-pyridinium 2-carb-oxy-benzoate-benzene-1,2-dicarb-oxy-lic acid (3/1).

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11

4.  2-Amino-5-methyl-pyridinium 2-carb-oxy-benzoate.

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-04

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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