| Literature DB >> 22058994 |
Madhukar Hemamalini1, Ibrahim Abdul Razak, Hoong-Kun Fun.
Abstract
In the title mol-ecular salt, C(6)H(9)N(2) (+)·C(8)H(5)O(4) (-), an intra-molecular O-H⋯O hydrogen bond occurs within the anion, thereby generating an S(7) ring, which may correlate with the fact that both the carb-oxy-lic acid and carboxyl-ate groups are almost coplanar with their attached rings [dihedral angles = 2.9 (3) and 5.2 (3)°, respectively]. In the crystal, each cation is linked to its adjacent anion by two N-H⋯O hydrogen bonds; the dihedral angle between the pyridine and benzene rings is 2.22 (10)°. The ion pairs are linked by further N-H⋯O inter-actions.Entities:
Year: 2011 PMID: 22058994 PMCID: PMC3200597 DOI: 10.1107/S1600536811033174
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C8H5O4− | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3645 reflections | |
| θ = 2.6–27.4° | |
| µ = 0.10 mm−1 | |
| α = 97.401 (6)° | |
| β = 102.940 (7)° | Needle, colourless |
| γ = 109.616 (6)° | 1.00 × 0.20 × 0.10 mm |
| Bruker APEXII DUO CCD diffractometer | 3706 independent reflections |
| Radiation source: fine-focus sealed tube | 2219 reflections with |
| graphite | |
| φ and ω scans | θmax = 29.9°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 12166 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3706 reflections | (Δ/σ)max < 0.001 |
| 194 parameters | Δρmax = 0.20 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.3997 (3) | 0.99186 (18) | 0.64341 (12) | 0.0720 (5) | |
| H1O1 | 0.3652 | 0.8964 | 0.5951 | 0.108* | |
| O2 | 0.4150 (3) | 1.09584 (17) | 0.82518 (13) | 0.0727 (5) | |
| O3 | 0.3231 (2) | 0.71890 (18) | 0.51427 (12) | 0.0682 (4) | |
| O4 | 0.2170 (2) | 0.44177 (18) | 0.51346 (12) | 0.0694 (4) | |
| N1 | 0.2619 (2) | 0.33871 (18) | 0.29978 (13) | 0.0452 (3) | |
| N2 | 0.3912 (3) | 0.6236 (2) | 0.28428 (16) | 0.0562 (4) | |
| C1 | 0.3333 (2) | 0.4560 (2) | 0.23665 (14) | 0.0441 (4) | |
| C2 | 0.3430 (3) | 0.3937 (2) | 0.12220 (15) | 0.0504 (4) | |
| H2A | 0.3931 | 0.4707 | 0.0766 | 0.060* | |
| C3 | 0.2783 (3) | 0.2199 (3) | 0.07971 (17) | 0.0574 (5) | |
| H3A | 0.2823 | 0.1782 | 0.0039 | 0.069* | |
| C4 | 0.2057 (3) | 0.1023 (3) | 0.14768 (18) | 0.0584 (5) | |
| H4A | 0.1623 | −0.0164 | 0.1174 | 0.070* | |
| C5 | 0.1989 (3) | 0.1630 (2) | 0.25911 (17) | 0.0503 (4) | |
| C6 | 0.1328 (4) | 0.0531 (3) | 0.3429 (2) | 0.0694 (6) | |
| H6A | 0.0575 | −0.0647 | 0.2996 | 0.104* | |
| H6B | 0.0516 | 0.0958 | 0.3808 | 0.104* | |
| H6C | 0.2465 | 0.0575 | 0.4023 | 0.104* | |
| C7 | 0.2521 (3) | 0.7860 (2) | 0.87715 (15) | 0.0481 (4) | |
| H7A | 0.2875 | 0.8912 | 0.9299 | 0.058* | |
| C8 | 0.1716 (3) | 0.6332 (3) | 0.91302 (16) | 0.0539 (4) | |
| H8A | 0.1541 | 0.6364 | 0.9886 | 0.065* | |
| C9 | 0.1182 (3) | 0.4775 (3) | 0.83617 (17) | 0.0561 (5) | |
| H9A | 0.0626 | 0.3742 | 0.8589 | 0.067* | |
| C10 | 0.1472 (3) | 0.4744 (2) | 0.72467 (16) | 0.0511 (4) | |
| H10A | 0.1106 | 0.3678 | 0.6733 | 0.061* | |
| C11 | 0.2297 (2) | 0.6265 (2) | 0.68645 (13) | 0.0419 (4) | |
| C12 | 0.2586 (3) | 0.5937 (2) | 0.56344 (15) | 0.0481 (4) | |
| C13 | 0.2820 (2) | 0.7880 (2) | 0.76533 (14) | 0.0424 (4) | |
| C14 | 0.3712 (3) | 0.9700 (2) | 0.74459 (16) | 0.0498 (4) | |
| H1N1 | 0.251 (3) | 0.383 (3) | 0.378 (2) | 0.068 (6)* | |
| H1N2 | 0.454 (4) | 0.707 (3) | 0.243 (2) | 0.075 (7)* | |
| H2N2 | 0.394 (3) | 0.663 (3) | 0.361 (2) | 0.074 (7)* |
| O1 | 0.1160 (13) | 0.0466 (8) | 0.0533 (8) | 0.0208 (7) | 0.0380 (8) | 0.0130 (6) |
| O2 | 0.1115 (13) | 0.0458 (8) | 0.0560 (8) | 0.0212 (8) | 0.0330 (8) | 0.0025 (6) |
| O3 | 0.0998 (11) | 0.0543 (8) | 0.0468 (8) | 0.0175 (7) | 0.0337 (7) | 0.0086 (6) |
| O4 | 0.1065 (12) | 0.0497 (8) | 0.0519 (8) | 0.0250 (8) | 0.0338 (8) | 0.0029 (6) |
| N1 | 0.0491 (8) | 0.0417 (8) | 0.0408 (7) | 0.0147 (6) | 0.0123 (6) | 0.0028 (6) |
| N2 | 0.0740 (10) | 0.0417 (8) | 0.0501 (9) | 0.0160 (7) | 0.0239 (8) | 0.0053 (7) |
| C1 | 0.0449 (8) | 0.0456 (9) | 0.0404 (8) | 0.0185 (7) | 0.0096 (6) | 0.0052 (7) |
| C2 | 0.0558 (10) | 0.0596 (11) | 0.0411 (9) | 0.0285 (8) | 0.0149 (7) | 0.0089 (8) |
| C3 | 0.0618 (11) | 0.0663 (12) | 0.0447 (9) | 0.0328 (9) | 0.0114 (8) | −0.0023 (8) |
| C4 | 0.0616 (11) | 0.0504 (10) | 0.0579 (11) | 0.0235 (8) | 0.0119 (9) | −0.0037 (8) |
| C5 | 0.0488 (9) | 0.0428 (9) | 0.0540 (10) | 0.0153 (7) | 0.0118 (7) | 0.0038 (7) |
| C6 | 0.0795 (14) | 0.0504 (11) | 0.0794 (15) | 0.0201 (10) | 0.0301 (11) | 0.0171 (10) |
| C7 | 0.0554 (10) | 0.0511 (10) | 0.0409 (9) | 0.0231 (8) | 0.0168 (7) | 0.0065 (7) |
| C8 | 0.0629 (11) | 0.0627 (12) | 0.0449 (9) | 0.0269 (9) | 0.0250 (8) | 0.0165 (8) |
| C9 | 0.0638 (11) | 0.0508 (10) | 0.0538 (11) | 0.0150 (8) | 0.0236 (8) | 0.0184 (8) |
| C10 | 0.0577 (10) | 0.0441 (9) | 0.0453 (9) | 0.0130 (7) | 0.0149 (7) | 0.0065 (7) |
| C11 | 0.0411 (8) | 0.0473 (9) | 0.0355 (8) | 0.0165 (6) | 0.0096 (6) | 0.0062 (6) |
| C12 | 0.0519 (9) | 0.0511 (10) | 0.0378 (8) | 0.0168 (7) | 0.0120 (7) | 0.0063 (7) |
| C13 | 0.0442 (8) | 0.0451 (9) | 0.0382 (8) | 0.0183 (7) | 0.0114 (6) | 0.0072 (7) |
| C14 | 0.0596 (10) | 0.0451 (9) | 0.0452 (9) | 0.0190 (7) | 0.0171 (7) | 0.0097 (7) |
| O1—C14 | 1.286 (2) | C4—H4A | 0.9300 |
| O1—H1O1 | 0.8434 | C5—C6 | 1.491 (3) |
| O2—C14 | 1.223 (2) | C6—H6A | 0.9600 |
| O3—C12 | 1.271 (2) | C6—H6B | 0.9600 |
| O4—C12 | 1.236 (2) | C6—H6C | 0.9600 |
| N1—C1 | 1.350 (2) | C7—C8 | 1.386 (3) |
| N1—C5 | 1.369 (2) | C7—C13 | 1.390 (2) |
| N1—H1N1 | 0.99 (3) | C7—H7A | 0.9300 |
| N2—C1 | 1.326 (2) | C8—C9 | 1.367 (3) |
| N2—H1N2 | 0.95 (3) | C8—H8A | 0.9300 |
| N2—H2N2 | 0.92 (3) | C9—C10 | 1.381 (3) |
| C1—C2 | 1.413 (2) | C9—H9A | 0.9300 |
| C2—C3 | 1.356 (3) | C10—C11 | 1.398 (2) |
| C2—H2A | 0.9300 | C10—H10A | 0.9300 |
| C3—C4 | 1.397 (3) | C11—C13 | 1.418 (2) |
| C3—H3A | 0.9300 | C11—C12 | 1.521 (2) |
| C4—C5 | 1.368 (3) | C13—C14 | 1.524 (3) |
| C14—O1—H1O1 | 111.8 | H6A—C6—H6C | 109.5 |
| C1—N1—C5 | 123.64 (16) | H6B—C6—H6C | 109.5 |
| C1—N1—H1N1 | 117.4 (13) | C8—C7—C13 | 122.48 (17) |
| C5—N1—H1N1 | 118.9 (13) | C8—C7—H7A | 118.8 |
| C1—N2—H1N2 | 119.1 (15) | C13—C7—H7A | 118.8 |
| C1—N2—H2N2 | 122.3 (15) | C9—C8—C7 | 119.37 (17) |
| H1N2—N2—H2N2 | 118 (2) | C9—C8—H8A | 120.3 |
| N2—C1—N1 | 118.97 (16) | C7—C8—H8A | 120.3 |
| N2—C1—C2 | 122.93 (17) | C8—C9—C10 | 119.76 (17) |
| N1—C1—C2 | 118.09 (15) | C8—C9—H9A | 120.1 |
| C3—C2—C1 | 119.05 (18) | C10—C9—H9A | 120.1 |
| C3—C2—H2A | 120.5 | C9—C10—C11 | 122.13 (17) |
| C1—C2—H2A | 120.5 | C9—C10—H10A | 118.9 |
| C2—C3—C4 | 121.27 (18) | C11—C10—H10A | 118.9 |
| C2—C3—H3A | 119.4 | C10—C11—C13 | 118.15 (15) |
| C4—C3—H3A | 119.4 | C10—C11—C12 | 113.54 (15) |
| C5—C4—C3 | 119.58 (17) | C13—C11—C12 | 128.27 (15) |
| C5—C4—H4A | 120.2 | O4—C12—O3 | 121.50 (17) |
| C3—C4—H4A | 120.2 | O4—C12—C11 | 117.68 (15) |
| C4—C5—N1 | 118.35 (17) | O3—C12—C11 | 120.82 (16) |
| C4—C5—C6 | 125.27 (18) | C7—C13—C11 | 118.09 (15) |
| N1—C5—C6 | 116.36 (17) | C7—C13—C14 | 113.65 (15) |
| C5—C6—H6A | 109.5 | C11—C13—C14 | 128.25 (15) |
| C5—C6—H6B | 109.5 | O2—C14—O1 | 120.10 (17) |
| H6A—C6—H6B | 109.5 | O2—C14—C13 | 119.35 (16) |
| C5—C6—H6C | 109.5 | O1—C14—C13 | 120.55 (16) |
| C5—N1—C1—N2 | −179.76 (16) | C10—C11—C12—O4 | −3.4 (2) |
| C5—N1—C1—C2 | 0.1 (2) | C13—C11—C12—O4 | 174.11 (17) |
| N2—C1—C2—C3 | −179.19 (17) | C10—C11—C12—O3 | 176.56 (16) |
| N1—C1—C2—C3 | 0.9 (2) | C13—C11—C12—O3 | −5.9 (3) |
| C1—C2—C3—C4 | −1.1 (3) | C8—C7—C13—C11 | −0.8 (3) |
| C2—C3—C4—C5 | 0.2 (3) | C8—C7—C13—C14 | 179.70 (16) |
| C3—C4—C5—N1 | 0.8 (3) | C10—C11—C13—C7 | 1.3 (2) |
| C3—C4—C5—C6 | −177.48 (18) | C12—C11—C13—C7 | −176.07 (15) |
| C1—N1—C5—C4 | −1.0 (3) | C10—C11—C13—C14 | −179.27 (16) |
| C1—N1—C5—C6 | 177.44 (16) | C12—C11—C13—C14 | 3.3 (3) |
| C13—C7—C8—C9 | −0.2 (3) | C7—C13—C14—O2 | 2.5 (3) |
| C7—C8—C9—C10 | 0.8 (3) | C11—C13—C14—O2 | −176.88 (17) |
| C8—C9—C10—C11 | −0.2 (3) | C7—C13—C14—O1 | −177.23 (17) |
| C9—C10—C11—C13 | −0.9 (3) | C11—C13—C14—O1 | 3.4 (3) |
| C9—C10—C11—C12 | 176.92 (17) |
| H··· | ||||
| O1—H1O1···O3 | 0.84 | 1.55 | 2.393 (2) | 174 |
| N1—H1N1···O4 | 0.98 (2) | 1.71 (2) | 2.692 (2) | 175 (2) |
| N2—H1N2···O2i | 0.96 (3) | 1.99 (2) | 2.940 (3) | 172 (2) |
| N2—H2N2···O3 | 0.92 (2) | 2.04 (2) | 2.936 (3) | 165 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.84 | 1.55 | 2.393 (2) | 174 |
| N1—H1 | 0.98 (2) | 1.71 (2) | 2.692 (2) | 175 (2) |
| N2—H1 | 0.96 (3) | 1.99 (2) | 2.940 (3) | 172 (2) |
| N2—H2 | 0.92 (2) | 2.04 (2) | 2.936 (3) | 165 (2) |
Symmetry code: (i) .