Literature DB >> 21588416

N-(4-Chloro-benzyl-idene)-3,4-dimethyl-isoxazol-5-amine.

Abdullah M Asiri, Salman A Khan, M Nawaz Tahir.   

Abstract

The mol-ecule of the title compound, C(12)H(11)ClN(2)O, has E configuration at the azomethine double bond and is virtually planar with a dihedral angle of 1.25 (13)° between the benzene and isoxazole rings. C-H⋯π inter-actions stabilize the crystal structure.

Entities:  

Year:  2010        PMID: 21588416      PMCID: PMC3007510          DOI: 10.1107/S1600536810029284

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Asiri et al. (2010 ▶); Fun et al. (2010 ▶); Shad et al. (2008 ▶); Tahir et al. (2008 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H11ClN2O M = 234.68 Monoclinic, a = 5.0877 (2) Å b = 24.5197 (9) Å c = 9.4673 (4) Å β = 94.871 (2)° V = 1176.77 (8) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 296 K 0.30 × 0.16 × 0.14 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.868, T max = 0.965 9016 measured reflections 2112 independent reflections 1539 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.120 S = 1.07 2112 reflections 147 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks text, I. DOI: 10.1107/S1600536810029284/gk2296sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029284/gk2296Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11ClN2OF(000) = 488
Mr = 234.68Dx = 1.325 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1539 reflections
a = 5.0877 (2) Åθ = 2.3–25.3°
b = 24.5197 (9) ŵ = 0.30 mm1
c = 9.4673 (4) ÅT = 296 K
β = 94.871 (2)°Needle, light brown
V = 1176.77 (8) Å30.30 × 0.16 × 0.14 mm
Z = 4
Bruker KAPPA APEXII CCD diffractometer2112 independent reflections
Radiation source: fine-focus sealed tube1539 reflections with I > 2σ(I)
graphiteRint = 0.030
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.3°
ω scansh = −6→6
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −29→29
Tmin = 0.868, Tmax = 0.965l = −11→11
9016 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0521P)2 + 0.2476P] where P = (Fo2 + 2Fc2)/3
2112 reflections(Δ/σ)max < 0.001
147 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.59118 (13)0.19483 (3)−0.44471 (7)0.0894 (3)
O10.5343 (3)0.03641 (6)0.15781 (16)0.0736 (6)
N10.3653 (3)0.11804 (7)0.05045 (17)0.0608 (6)
N20.7399 (4)0.02071 (8)0.2600 (2)0.0763 (7)
C1−0.0022 (4)0.11701 (8)−0.1255 (2)0.0576 (7)
C2−0.1918 (4)0.08576 (9)−0.2009 (2)0.0676 (8)
C3−0.3750 (4)0.10921 (9)−0.2987 (2)0.0701 (8)
C4−0.3674 (4)0.16448 (9)−0.3200 (2)0.0630 (8)
C5−0.1824 (5)0.19639 (9)−0.2446 (3)0.0775 (9)
C6−0.0019 (4)0.17261 (10)−0.1484 (3)0.0724 (8)
C70.1915 (4)0.09088 (9)−0.0251 (2)0.0622 (7)
C80.5459 (4)0.09160 (9)0.1431 (2)0.0576 (7)
C90.7462 (4)0.11227 (8)0.2291 (2)0.0575 (7)
C100.8603 (4)0.06588 (9)0.2988 (2)0.0617 (7)
C111.0916 (4)0.06456 (11)0.4077 (2)0.0785 (9)
C120.8318 (4)0.16992 (9)0.2438 (3)0.0778 (9)
H2−0.196090.04832−0.185540.0811*
H3−0.501490.08784−0.349210.0842*
H5−0.180160.23391−0.258950.0930*
H60.122980.19425−0.097570.0869*
H70.188240.05313−0.015780.0746*
H11A1.153180.027720.420020.1177*
H11B1.039400.078210.496130.1177*
H11C1.230560.086920.376650.1177*
H12A0.720030.192300.180850.1168*
H12B1.010970.173120.220230.1168*
H12C0.819710.181680.339720.1168*
U11U22U33U12U13U23
Cl10.0947 (5)0.0856 (5)0.0842 (4)0.0155 (3)−0.0142 (3)0.0044 (3)
O10.0787 (10)0.0567 (9)0.0821 (10)−0.0045 (7)−0.0123 (8)−0.0012 (7)
N10.0579 (10)0.0613 (11)0.0634 (10)−0.0002 (8)0.0067 (8)−0.0017 (8)
N20.0797 (12)0.0638 (12)0.0816 (12)0.0000 (10)−0.0161 (10)0.0055 (10)
C10.0568 (11)0.0568 (12)0.0597 (11)0.0007 (9)0.0079 (9)−0.0057 (9)
C20.0741 (14)0.0517 (12)0.0761 (14)−0.0019 (10)0.0014 (11)−0.0053 (11)
C30.0702 (14)0.0664 (14)0.0715 (14)−0.0028 (11)−0.0071 (11)−0.0110 (11)
C40.0642 (13)0.0644 (14)0.0602 (12)0.0080 (10)0.0041 (10)−0.0028 (10)
C50.0836 (16)0.0537 (13)0.0932 (17)−0.0027 (11)−0.0041 (13)0.0021 (12)
C60.0709 (14)0.0617 (14)0.0822 (15)−0.0064 (11)−0.0074 (11)−0.0056 (12)
C70.0663 (13)0.0559 (12)0.0647 (12)0.0006 (10)0.0077 (10)−0.0048 (10)
C80.0589 (12)0.0548 (12)0.0598 (11)0.0013 (9)0.0099 (9)−0.0006 (9)
C90.0565 (11)0.0618 (13)0.0552 (11)−0.0041 (10)0.0102 (9)−0.0011 (10)
C100.0633 (12)0.0647 (13)0.0575 (11)−0.0039 (11)0.0082 (9)0.0004 (10)
C110.0716 (14)0.0913 (18)0.0708 (14)−0.0056 (12)−0.0044 (11)0.0059 (12)
C120.0793 (15)0.0613 (14)0.0921 (16)−0.0106 (12)0.0026 (12)−0.0055 (12)
Cl1—C41.737 (2)C9—C101.415 (3)
O1—N21.417 (2)C9—C121.482 (3)
O1—C81.362 (3)C10—C111.498 (3)
N1—C71.277 (3)C2—H20.9300
N1—C81.377 (3)C3—H30.9300
N2—C101.303 (3)C5—H50.9300
C1—C21.382 (3)C6—H60.9300
C1—C61.380 (3)C7—H70.9300
C1—C71.458 (3)C11—H11A0.9600
C2—C31.382 (3)C11—H11B0.9600
C3—C41.371 (3)C11—H11C0.9600
C4—C51.376 (3)C12—H12A0.9600
C5—C61.368 (4)C12—H12B0.9600
C8—C91.348 (3)C12—H12C0.9600
Cl1···H12Ci3.0600C12···H11C3.0700
O1···H72.3400H2···H72.4300
O1···H2ii2.7200H2···O1ii2.7200
N1···H62.5800H3···C11vi3.0200
N1···H12A2.7800H6···N12.5800
N1···H12Biii2.8500H7···O12.3400
C3···C7iii3.570 (3)H7···H22.4300
C7···C3iv3.570 (3)H11B···C3vii3.0800
C7···C9iii3.482 (3)H11C···C8iv2.8400
C9···C7iv3.482 (3)H11C···C123.0700
C3···H11Bi3.0800H12A···N12.7800
C8···H11Ciii2.8400H12B···N1iv2.8500
C11···H3v3.0200H12C···Cl1vii3.0600
N2—O1—C8107.69 (15)C1—C2—H2119.00
C7—N1—C8120.28 (18)C3—C2—H2119.00
O1—N2—C10105.29 (17)C2—C3—H3121.00
C2—C1—C6118.45 (19)C4—C3—H3121.00
C2—C1—C7119.77 (18)C4—C5—H5120.00
C6—C1—C7121.78 (19)C6—C5—H5120.00
C1—C2—C3121.1 (2)C1—C6—H6119.00
C2—C3—C4118.94 (19)C5—C6—H6119.00
Cl1—C4—C3119.90 (16)N1—C7—H7119.00
Cl1—C4—C5119.28 (18)C1—C7—H7119.00
C3—C4—C5120.82 (19)C10—C11—H11A109.00
C4—C5—C6119.6 (2)C10—C11—H11B109.00
C1—C6—C5121.1 (2)C10—C11—H11C109.00
N1—C7—C1122.3 (2)H11A—C11—H11B109.00
O1—C8—N1120.02 (18)H11A—C11—H11C109.00
O1—C8—C9110.42 (18)H11B—C11—H11C109.00
N1—C8—C9129.6 (2)C9—C12—H12A109.00
C8—C9—C10103.81 (18)C9—C12—H12B109.00
C8—C9—C12128.04 (19)C9—C12—H12C109.00
C10—C9—C12128.13 (19)H12A—C12—H12B109.00
N2—C10—C9112.79 (18)H12A—C12—H12C109.00
N2—C10—C11119.9 (2)H12B—C12—H12C110.00
C9—C10—C11127.3 (2)
C8—O1—N2—C10−0.4 (2)C1—C2—C3—C4−0.3 (3)
N2—O1—C8—N1−179.39 (17)C2—C3—C4—Cl1178.75 (15)
N2—O1—C8—C90.1 (2)C2—C3—C4—C5−0.6 (3)
C8—N1—C7—C1−179.45 (18)Cl1—C4—C5—C6−178.59 (19)
C7—N1—C8—O1−2.1 (3)C3—C4—C5—C60.8 (4)
C7—N1—C8—C9178.5 (2)C4—C5—C6—C10.0 (4)
O1—N2—C10—C90.5 (2)O1—C8—C9—C100.2 (2)
O1—N2—C10—C11179.91 (17)O1—C8—C9—C12178.5 (2)
C6—C1—C2—C31.0 (3)N1—C8—C9—C10179.6 (2)
C7—C1—C2—C3−178.80 (18)N1—C8—C9—C12−2.1 (4)
C2—C1—C6—C5−0.8 (3)C8—C9—C10—N2−0.4 (2)
C7—C1—C6—C5179.0 (2)C8—C9—C10—C11−179.78 (19)
C2—C1—C7—N1−177.71 (19)C12—C9—C10—N2−178.7 (2)
C6—C1—C7—N12.5 (3)C12—C9—C10—C111.9 (3)
Cg1 is the centroid of the O1/N2/C10/C9/C8 ring.
D—H···AD—HH···AD···AD—H···A
C7—H7···O10.932.342.704 (3)103
C11—H11C···Cg1iv0.962.913.644 (2)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the O1/N2/C10/C9/C8 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11CCg1i0.962.913.644 (2)134

Symmetry code: (i) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-[(E)-(3,4-Dimethyl-isoxazol-5-yl)imino-meth-yl]-2-naphthol.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; Abdullah M Asiri; Salman A Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

3.  2-[(E)-(3,4-Dimethyl-isoxazol-5-yl)imino-meth-yl]phenol.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; Abdullah M Asiri; Salman A Khan; Khalid A Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-06

4.  4-Bromo-2-((E)-{4-[(3,4-dimethyl-isoxazol-5-yl)sulfamo-yl]phen-yl}iminio-meth-yl)phenolate.

Authors:  M Nawaz Tahir; Zahid H Chohan; Hazoor A Shad; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-14

5.  N-(4-Bromo-benzyl-idene)-3,4-dimethyl-isoxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-21

6.  4-Chloro-2-[(E)-({4-[N-(3,4-dimethyl-isoxazol-5-yl)sulfamo-yl]phen-yl}iminio)meth-yl]phenolate.

Authors:  Hazoor A Shad; Zahid H Chohan; M Nawaz Tahir; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-27

7.  N-[4-(Dimethyl-amino)-benzyl-idene]-3,4-dimethyl-isoxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; Kong Wai Tan; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

8.  Structure validation in chemical crystallography.

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  8 in total
  2 in total

1.  3,4-Dimethyl-N-[(E)-3-nitro-benzyl-idene]-1,2-oxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11

2.  N-[(E)-1,3-Benzodioxol-5-yl-methyl-idene]-3,4-dimethyl-1,2-oxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11
  2 in total

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