Literature DB >> 21580617

2-[(E)-(3,4-Dimethyl-isoxazol-5-yl)imino-meth-yl]phenol.

Hoong-Kun Fun, Madhukar Hemamalini, Abdullah M Asiri, Salman A Khan, Khalid A Khan.   

Abstract

The title compound, C(12)H(12)N(2)O(2), has been synthesized by the reaction of 5-amino-3,4-dimethyl-isoxazole and salicyladehyde. The mol-ecule adopts an E configuration about the central C=N double bond. The dihedral angle between the isoxazole and phenyl rings is 4.2 (2)° and an intra-molecular O-H⋯N hydrogen bond generates an S(6) ring motif. The crystal studied was a non-merohedral twin with a domain ratio of 0.834 (4):0.166 (4).

Entities:  

Year:  2010        PMID: 21580617      PMCID: PMC2983993          DOI: 10.1107/S1600536810008160

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological and pharmacological properties of oxazole derivatives, see: Spinelli (1999 ▶); Conti et al. (1998 ▶); Mishra et al. (1998 ▶); Ko et al. (1998 ▶); Kang et al. (2000 ▶); Huang & Chen (2005 ▶). For details of hydrogen bonding and hydrogen-bond motifs, see: Jeffrey & Saenger (1991 ▶); Bernstein et al. (1995 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C12H12N2O2 M = 216.24 Triclinic, a = 5.3475 (14) Å b = 8.615 (2) Å c = 12.321 (3) Å α = 103.696 (5)° β = 91.486 (5)° γ = 94.059 (5)° V = 549.6 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.56 × 0.14 × 0.08 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.951, T max = 0.993 2467 measured reflections 2467 independent reflections 1946 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.070 wR(F 2) = 0.203 S = 1.06 2467 reflections 152 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810008160/sj2738sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008160/sj2738Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2O2Z = 2
Mr = 216.24F(000) = 228
Triclinic, P1Dx = 1.307 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.3475 (14) ÅCell parameters from 2862 reflections
b = 8.615 (2) Åθ = 2.4–29.7°
c = 12.321 (3) ŵ = 0.09 mm1
α = 103.696 (5)°T = 100 K
β = 91.486 (5)°Plate, yellow
γ = 94.059 (5)°0.56 × 0.14 × 0.08 mm
V = 549.6 (2) Å3
Bruker APEX DUO CCD area-detector diffractometer2467 independent reflections
Radiation source: fine-focus sealed tube1946 reflections with I > 2σ(I)
graphiteRint = 0.0000
φ and ω scansθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −6→6
Tmin = 0.951, Tmax = 0.993k = −11→10
2467 measured reflectionsl = −6→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.070Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.203H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0657P)2 + 1.1217P] where P = (Fo2 + 2Fc2)/3
2467 reflections(Δ/σ)max = 0.001
152 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.34 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.0387 (4)1.1305 (2)0.41739 (17)0.0228 (5)
O20.6135 (4)0.7350 (3)0.08828 (18)0.0262 (5)
N10.8330 (5)0.9521 (3)0.2591 (2)0.0194 (5)
N21.2481 (5)1.2478 (3)0.4414 (2)0.0252 (6)
C10.2930 (5)0.7387 (3)0.3499 (3)0.0201 (6)
H1A0.30820.78920.42560.024*
C20.0960 (5)0.6240 (3)0.3108 (3)0.0221 (6)
H2A−0.02240.59900.35930.026*
C30.0782 (6)0.5468 (4)0.1976 (3)0.0249 (7)
H3A−0.05290.46910.17100.030*
C40.2512 (6)0.5831 (4)0.1235 (3)0.0250 (7)
H4A0.23620.52960.04840.030*
C50.4491 (5)0.7008 (3)0.1626 (2)0.0199 (6)
C60.4711 (5)0.7802 (3)0.2771 (2)0.0186 (6)
C70.6723 (5)0.9024 (3)0.3225 (2)0.0191 (6)
H7A0.68590.94620.39920.023*
C81.0225 (5)1.0682 (3)0.3052 (2)0.0176 (6)
C91.2091 (5)1.1366 (3)0.2539 (2)0.0192 (6)
C101.3428 (5)1.2479 (3)0.3446 (2)0.0195 (6)
C111.2629 (6)1.1010 (4)0.1327 (3)0.0276 (7)
H11A1.14571.01630.09210.041*
H11C1.43051.06850.12290.041*
H11D1.24701.19530.10510.041*
C121.5687 (5)1.3582 (4)0.3386 (3)0.0243 (7)
H12A1.61911.42020.41240.036*
H12D1.52851.42870.29200.036*
H12B1.70341.29630.30750.036*
H1O20.722 (11)0.820 (7)0.132 (5)0.080 (18)*
U11U22U33U12U13U23
O10.0194 (11)0.0238 (11)0.0233 (11)−0.0060 (8)0.0019 (8)0.0042 (8)
O20.0250 (12)0.0281 (11)0.0232 (11)−0.0040 (9)0.0061 (9)0.0028 (9)
N10.0170 (12)0.0148 (11)0.0261 (13)0.0009 (9)0.0020 (9)0.0041 (9)
N20.0207 (13)0.0246 (13)0.0290 (14)−0.0061 (10)−0.0003 (10)0.0062 (10)
C10.0155 (14)0.0176 (13)0.0270 (15)0.0054 (10)0.0036 (11)0.0036 (11)
C20.0152 (14)0.0204 (14)0.0318 (16)0.0021 (11)0.0054 (11)0.0078 (12)
C30.0159 (14)0.0225 (14)0.0353 (17)−0.0013 (11)−0.0012 (12)0.0063 (12)
C40.0247 (16)0.0227 (15)0.0246 (15)−0.0006 (12)−0.0007 (12)0.0004 (12)
C50.0164 (14)0.0194 (14)0.0242 (14)0.0026 (11)0.0021 (11)0.0052 (11)
C60.0154 (13)0.0155 (13)0.0256 (14)0.0033 (10)0.0019 (11)0.0054 (11)
C70.0199 (14)0.0158 (13)0.0216 (14)0.0058 (11)0.0019 (11)0.0034 (10)
C80.0140 (13)0.0163 (13)0.0237 (14)0.0051 (10)0.0029 (10)0.0056 (10)
C90.0159 (13)0.0169 (13)0.0262 (15)0.0037 (10)0.0033 (11)0.0074 (11)
C100.0136 (13)0.0169 (13)0.0296 (15)0.0038 (10)0.0020 (11)0.0079 (11)
C110.0272 (16)0.0291 (16)0.0260 (16)0.0009 (13)0.0080 (12)0.0055 (12)
C120.0137 (13)0.0215 (14)0.0392 (17)0.0005 (11)0.0038 (12)0.0100 (12)
O1—C81.357 (3)C4—H4A0.9300
O1—N21.429 (3)C5—C61.412 (4)
O2—C51.353 (4)C6—C71.452 (4)
O2—H1O20.95 (6)C7—H7A0.9300
N1—C71.293 (4)C8—C91.367 (4)
N1—C81.381 (4)C9—C101.426 (4)
N2—C101.308 (4)C9—C111.491 (4)
C1—C21.385 (4)C10—C121.498 (4)
C1—C61.410 (4)C11—H11A0.9600
C1—H1A0.9300C11—H11C0.9600
C2—C31.394 (4)C11—H11D0.9600
C2—H2A0.9300C12—H12A0.9600
C3—C41.387 (4)C12—H12D0.9600
C3—H3A0.9300C12—H12B0.9600
C4—C51.404 (4)
C8—O1—N2107.7 (2)N1—C7—H7A119.1
C5—O2—H1O2103 (3)C6—C7—H7A119.1
C7—N1—C8120.3 (2)O1—C8—C9110.8 (2)
C10—N2—O1105.3 (2)O1—C8—N1119.7 (2)
C2—C1—C6121.2 (3)C9—C8—N1129.5 (3)
C2—C1—H1A119.4C8—C9—C10103.2 (3)
C6—C1—H1A119.4C8—C9—C11128.4 (3)
C1—C2—C3118.9 (3)C10—C9—C11128.4 (3)
C1—C2—H2A120.6N2—C10—C9112.9 (3)
C3—C2—H2A120.6N2—C10—C12119.8 (3)
C4—C3—C2121.6 (3)C9—C10—C12127.3 (3)
C4—C3—H3A119.2C9—C11—H11A109.5
C2—C3—H3A119.2C9—C11—H11C109.5
C3—C4—C5119.7 (3)H11A—C11—H11C109.5
C3—C4—H4A120.2C9—C11—H11D109.5
C5—C4—H4A120.2H11A—C11—H11D109.5
O2—C5—C4118.4 (3)H11C—C11—H11D109.5
O2—C5—C6121.9 (3)C10—C12—H12A109.5
C4—C5—C6119.6 (3)C10—C12—H12D109.5
C1—C6—C5119.0 (3)H12A—C12—H12D109.5
C1—C6—C7118.8 (3)C10—C12—H12B109.5
C5—C6—C7122.2 (3)H12A—C12—H12B109.5
N1—C7—C6121.8 (3)H12D—C12—H12B109.5
C8—O1—N2—C10−0.3 (3)N2—O1—C8—C90.3 (3)
C6—C1—C2—C31.3 (4)N2—O1—C8—N1−179.4 (2)
C1—C2—C3—C4−0.6 (5)C7—N1—C8—O1−0.3 (4)
C2—C3—C4—C5−0.3 (5)C7—N1—C8—C9−179.9 (3)
C3—C4—C5—O2−179.3 (3)O1—C8—C9—C10−0.2 (3)
C3—C4—C5—C60.5 (4)N1—C8—C9—C10179.4 (3)
C2—C1—C6—C5−1.1 (4)O1—C8—C9—C11178.7 (3)
C2—C1—C6—C7179.4 (3)N1—C8—C9—C11−1.7 (5)
O2—C5—C6—C1180.0 (3)O1—N2—C10—C90.1 (3)
C4—C5—C6—C10.2 (4)O1—N2—C10—C12−179.8 (2)
O2—C5—C6—C7−0.5 (4)C8—C9—C10—N20.0 (3)
C4—C5—C6—C7179.7 (3)C11—C9—C10—N2−178.9 (3)
C8—N1—C7—C6−179.7 (2)C8—C9—C10—C12180.0 (3)
C1—C6—C7—N1−176.1 (3)C11—C9—C10—C121.1 (5)
C5—C6—C7—N14.4 (4)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···N11.00 (9)1.71 (8)2.648 (5)154 (8)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯N11.00 (9)1.71 (8)2.648 (5)154 (8)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of new delta 2-isoxazoline derivatives and their pharmacological characterization as beta-adrenergic receptor antagonists.

Authors:  P Conti; C Dallanoce; M De Amici; C De Micheli; K N Klotz
Journal:  Bioorg Med Chem       Date:  1998-04       Impact factor: 3.641

3.  Synthesis and antibacterial activity of new carbapenems containing isoxazole moiety.

Authors:  Y K Kang; K J Shin; K H Yoo; K J Seo; C Y Hong; C S Lee; S Y Park; D J Kim; S W Park
Journal:  Bioorg Med Chem Lett       Date:  2000-01-17       Impact factor: 2.823

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  3 in total

1.  1-[(E)-(3,4-Dimethyl-isoxazol-5-yl)imino-meth-yl]-2-naphthol.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; Abdullah M Asiri; Salman A Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

2.  N-(4-Chloro-benzyl-idene)-3,4-dimethyl-isoxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

3.  N-(4-Bromo-benzyl-idene)-3,4-dimethyl-isoxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-21
  3 in total

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