Literature DB >> 21588358

1-Benzyl-N-methyl-1H-pyrrole-2-carboxamide.

Xiang Chao Zeng1, Kai Ping Li, Fang Hu, Le Zheng.   

Abstract

The asymmetric unit of the title compound, C(13)H(14)N(2)O, contains two independent mol-ecules, which differ in the twist of the phenyl ring: the N(pyrrole)-C(H(2))-C-C torsion angles are -73.0 (3) and 17.1 (3)°. In the crystal structure, mol-ecules are linked through N-H⋯O hydrogen bonds into chains extending along the a axis.

Entities:  

Year:  2010        PMID: 21588358      PMCID: PMC3007309          DOI: 10.1107/S160053681002787X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bioactivity of pyrrole derivatives, see: Fabio et al. (2007 ▶); Banwell et al. (2006 ▶). For related structures, see: Zeng et al. (2007 ▶); Li et al. (2009 ▶).

Experimental

Crystal data

C13H14N2O M = 214.26 Monoclinic, a = 9.8285 (18) Å b = 23.588 (4) Å c = 9.9230 (17) Å β = 90.107 (3)° V = 2300.5 (7) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 110 K 0.45 × 0.43 × 0.41 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.965, T max = 0.968 10728 measured reflections 4879 independent reflections 4388 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.157 S = 1.03 4879 reflections 300 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681002787X/cv2741sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002787X/cv2741Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2ODx = 1.237 Mg m3
Mr = 214.26Melting point: 365 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 9.8285 (18) ÅCell parameters from 7113 reflections
b = 23.588 (4) Åθ = 2.2–27.0°
c = 9.9230 (17) ŵ = 0.08 mm1
β = 90.107 (3)°T = 110 K
V = 2300.5 (7) Å3Prism, colourless
Z = 80.45 × 0.43 × 0.41 mm
F(000) = 912
Bruker SMART 1K CCD area-detector diffractometer4879 independent reflections
Radiation source: fine-focus sealed tube4388 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 27.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.965, Tmax = 0.968k = −30→18
10728 measured reflectionsl = −8→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.1044P)2 + 0.2726P] where P = (Fo2 + 2Fc2)/3
4879 reflections(Δ/σ)max = 0.001
300 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.26038 (14)0.34460 (7)1.12858 (15)0.0345 (4)
N40.46989 (19)0.36072 (8)1.21438 (18)0.0298 (4)
O10.75946 (15)0.35421 (7)0.24801 (16)0.0351 (4)
C180.38669 (19)0.34269 (8)1.11684 (19)0.0248 (4)
N30.38660 (18)0.31280 (7)0.87447 (16)0.0278 (4)
C50.8847 (2)0.34954 (8)0.2623 (2)0.0261 (4)
C40.94580 (19)0.32331 (7)0.3830 (2)0.0251 (4)
N10.87834 (18)0.31770 (7)0.50486 (17)0.0284 (4)
C31.0677 (2)0.29404 (8)0.3945 (2)0.0299 (4)
H31.13470.29030.32620.036*
C210.2777 (2)0.39956 (8)0.7816 (2)0.0276 (4)
C170.4525 (2)0.31943 (8)0.9961 (2)0.0254 (4)
N20.97245 (19)0.36613 (8)0.16790 (19)0.0325 (4)
C70.7549 (2)0.34689 (9)0.5492 (2)0.0318 (4)
H7A0.70100.32070.60580.038*
H7B0.69940.35640.46900.038*
C160.5796 (2)0.29413 (8)0.9852 (2)0.0305 (4)
H160.64690.29201.05390.037*
C250.3206 (3)0.49865 (10)0.8254 (3)0.0427 (5)
H250.33900.52840.88730.051*
C150.5903 (3)0.27231 (9)0.8536 (2)0.0378 (5)
H150.66590.25250.81700.045*
C80.7817 (2)0.40061 (8)0.6283 (2)0.0289 (4)
C200.2580 (2)0.33927 (9)0.8305 (2)0.0305 (4)
H20A0.19310.33930.90670.037*
H20B0.21780.31630.75690.037*
C190.4191 (2)0.37479 (11)1.3473 (2)0.0387 (5)
H19A0.32380.38671.34040.058*
H19B0.47350.40571.38550.058*
H19C0.42560.34141.40580.058*
C110.8202 (3)0.50016 (11)0.7752 (3)0.0442 (5)
H110.83340.53410.82510.053*
C10.9583 (3)0.28673 (8)0.5899 (2)0.0355 (5)
H10.93660.27750.68050.043*
C140.4714 (3)0.28490 (8)0.7884 (2)0.0345 (5)
H140.45110.27570.69740.041*
C220.2682 (2)0.41183 (9)0.6454 (2)0.0338 (5)
H220.25010.38220.58300.041*
C260.3042 (2)0.44347 (9)0.8715 (2)0.0371 (5)
H260.31110.43570.96520.044*
C60.9276 (3)0.38588 (13)0.0361 (3)0.0497 (6)
H6A0.89890.3534−0.01860.075*
H6B1.00270.4055−0.00900.075*
H6C0.85100.41200.04700.075*
C90.6769 (2)0.42377 (10)0.7042 (2)0.0379 (5)
H90.59090.40540.70660.045*
C21.0749 (2)0.27108 (8)0.5242 (2)0.0347 (5)
H21.14690.24880.56010.042*
C130.9061 (2)0.42821 (10)0.6273 (2)0.0378 (5)
H130.97900.41320.57560.045*
C230.2847 (3)0.46671 (10)0.5993 (2)0.0423 (5)
H230.27850.47460.50560.051*
C100.6962 (3)0.47337 (11)0.7765 (3)0.0447 (6)
H100.62330.48890.82720.054*
C120.9253 (3)0.47759 (11)0.7011 (3)0.0469 (6)
H121.01140.49590.70040.056*
C240.3101 (3)0.51017 (10)0.6894 (3)0.0426 (5)
H240.32030.54790.65770.051*
H2A1.058 (4)0.3631 (12)0.183 (3)0.051 (8)*
H40.557 (3)0.3597 (11)1.204 (3)0.044 (7)*
U11U22U33U12U13U23
O30.0196 (6)0.0549 (9)0.0290 (7)−0.0027 (6)0.0040 (6)−0.0056 (7)
N40.0200 (8)0.0428 (9)0.0267 (8)0.0019 (7)0.0021 (7)−0.0066 (7)
O10.0200 (7)0.0510 (9)0.0342 (7)0.0021 (6)−0.0005 (6)0.0048 (7)
C180.0228 (8)0.0286 (8)0.0231 (8)−0.0006 (7)0.0033 (8)0.0014 (7)
N30.0334 (9)0.0271 (7)0.0230 (7)−0.0028 (6)0.0040 (7)−0.0011 (6)
C50.0221 (9)0.0259 (8)0.0301 (9)0.0001 (7)0.0010 (8)−0.0020 (8)
C40.0235 (9)0.0258 (8)0.0261 (9)−0.0012 (7)0.0017 (8)−0.0031 (7)
N10.0292 (8)0.0297 (8)0.0263 (8)0.0001 (7)0.0027 (7)0.0007 (7)
C30.0288 (9)0.0297 (9)0.0311 (10)0.0050 (7)−0.0019 (9)−0.0038 (8)
C210.0216 (8)0.0337 (10)0.0276 (9)0.0015 (7)0.0028 (8)−0.0002 (8)
C170.0246 (9)0.0269 (8)0.0249 (9)−0.0021 (7)0.0063 (8)0.0023 (7)
N20.0220 (8)0.0439 (10)0.0315 (9)0.0032 (7)0.0047 (7)0.0066 (8)
C70.0251 (10)0.0390 (11)0.0313 (9)−0.0027 (8)0.0067 (9)−0.0027 (8)
C160.0296 (10)0.0313 (9)0.0307 (10)0.0058 (8)0.0091 (9)0.0047 (8)
C250.0439 (12)0.0329 (10)0.0512 (13)0.0004 (9)−0.0023 (12)−0.0046 (10)
C150.0473 (13)0.0321 (9)0.0339 (11)0.0097 (9)0.0157 (10)0.0006 (9)
C80.0275 (9)0.0339 (9)0.0251 (8)0.0022 (8)0.0007 (8)0.0024 (8)
C200.0309 (10)0.0345 (10)0.0260 (8)−0.0067 (8)0.0001 (8)−0.0001 (8)
C190.0307 (11)0.0574 (13)0.0280 (10)0.0063 (10)0.0003 (9)−0.0112 (9)
C110.0467 (13)0.0429 (12)0.0431 (12)0.0042 (10)−0.0025 (11)−0.0125 (10)
C10.0455 (13)0.0323 (10)0.0287 (10)0.0005 (9)−0.0043 (10)0.0017 (8)
C140.0493 (13)0.0276 (10)0.0265 (9)0.0036 (9)0.0080 (10)−0.0031 (8)
C220.0370 (11)0.0386 (11)0.0260 (9)0.0064 (9)0.0037 (8)−0.0001 (9)
C260.0419 (12)0.0367 (10)0.0325 (10)−0.0014 (9)−0.0046 (10)−0.0030 (9)
C60.0376 (12)0.0753 (17)0.0362 (11)0.0101 (12)0.0077 (11)0.0211 (12)
C90.0288 (10)0.0461 (12)0.0387 (11)0.0016 (9)0.0055 (10)−0.0029 (10)
C20.0395 (11)0.0315 (10)0.0329 (10)0.0082 (9)−0.0063 (9)−0.0026 (8)
C130.0272 (10)0.0441 (11)0.0421 (11)−0.0009 (9)0.0057 (10)−0.0089 (10)
C230.0497 (14)0.0452 (12)0.0320 (10)0.0104 (10)0.0063 (11)0.0113 (10)
C100.0369 (12)0.0518 (14)0.0454 (13)0.0097 (10)0.0050 (11)−0.0117 (11)
C120.0347 (12)0.0497 (13)0.0563 (15)−0.0080 (10)0.0001 (12)−0.0131 (12)
C240.0402 (12)0.0340 (11)0.0536 (13)0.0057 (9)0.0065 (11)0.0103 (10)
O3—C181.248 (2)C15—C141.367 (4)
N4—C181.335 (3)C15—H150.9500
N4—C191.450 (3)C8—C131.386 (3)
N4—H40.87 (3)C8—C91.390 (3)
O1—C51.243 (2)C20—H20A0.9900
C18—C171.469 (3)C20—H20B0.9900
N3—C141.364 (3)C19—H19A0.9800
N3—C171.378 (3)C19—H19B0.9800
N3—C201.475 (3)C19—H19C0.9800
C5—N21.334 (3)C11—C101.373 (4)
C5—C41.475 (3)C11—C121.376 (4)
C4—N11.386 (3)C11—H110.9500
C4—C31.388 (3)C1—C21.369 (3)
N1—C11.364 (3)C1—H10.9500
N1—C71.463 (3)C14—H140.9500
C3—C21.398 (3)C22—C231.383 (3)
C3—H30.9500C22—H220.9500
C21—C221.385 (3)C26—H260.9500
C21—C261.391 (3)C6—H6A0.9800
C21—C201.515 (3)C6—H6B0.9800
C17—C161.389 (3)C6—H6C0.9800
N2—C61.456 (3)C9—C101.385 (3)
N2—H2A0.86 (4)C9—H90.9500
C7—C81.513 (3)C2—H20.9500
C7—H7A0.9900C13—C121.388 (3)
C7—H7B0.9900C13—H130.9500
C16—C151.408 (3)C23—C241.383 (4)
C16—H160.9500C23—H230.9500
C25—C241.381 (4)C10—H100.9500
C25—C261.389 (3)C12—H120.9500
C25—H250.9500C24—H240.9500
C18—N4—C19121.39 (18)N3—C20—H20B109.1
C18—N4—H4120.7 (19)C21—C20—H20B109.1
C19—N4—H4117.3 (19)H20A—C20—H20B107.8
O3—C18—N4121.92 (18)N4—C19—H19A109.5
O3—C18—C17121.96 (18)N4—C19—H19B109.5
N4—C18—C17116.10 (17)H19A—C19—H19B109.5
C14—N3—C17108.44 (18)N4—C19—H19C109.5
C14—N3—C20122.93 (18)H19A—C19—H19C109.5
C17—N3—C20127.76 (16)H19B—C19—H19C109.5
O1—C5—N2122.4 (2)C10—C11—C12119.6 (2)
O1—C5—C4122.11 (19)C10—C11—H11120.2
N2—C5—C4115.51 (18)C12—C11—H11120.2
N1—C4—C3107.17 (18)N1—C1—C2109.37 (19)
N1—C4—C5123.61 (17)N1—C1—H1125.3
C3—C4—C5128.74 (19)C2—C1—H1125.3
C1—N1—C4108.33 (18)N3—C14—C15109.37 (19)
C1—N1—C7122.91 (18)N3—C14—H14125.3
C4—N1—C7127.97 (17)C15—C14—H14125.3
C4—C3—C2108.07 (19)C23—C22—C21120.7 (2)
C4—C3—H3126.0C23—C22—H22119.6
C2—C3—H3126.0C21—C22—H22119.6
C22—C21—C26118.8 (2)C25—C26—C21120.5 (2)
C22—C21—C20120.01 (18)C25—C26—H26119.7
C26—C21—C20121.14 (18)C21—C26—H26119.7
N3—C17—C16107.72 (18)N2—C6—H6A109.5
N3—C17—C18123.36 (17)N2—C6—H6B109.5
C16—C17—C18128.44 (19)H6A—C6—H6B109.5
C5—N2—C6122.00 (19)N2—C6—H6C109.5
C5—N2—H2A119 (2)H6A—C6—H6C109.5
C6—N2—H2A118 (2)H6B—C6—H6C109.5
N1—C7—C8113.97 (17)C10—C9—C8120.8 (2)
N1—C7—H7A108.8C10—C9—H9119.6
C8—C7—H7A108.8C8—C9—H9119.6
N1—C7—H7B108.8C1—C2—C3107.04 (19)
C8—C7—H7B108.8C1—C2—H2126.5
H7A—C7—H7B107.7C3—C2—H2126.5
C17—C16—C15107.3 (2)C8—C13—C12120.6 (2)
C17—C16—H16126.3C8—C13—H13119.7
C15—C16—H16126.3C12—C13—H13119.7
C24—C25—C26119.9 (2)C24—C23—C22120.1 (2)
C24—C25—H25120.1C24—C23—H23120.0
C26—C25—H25120.1C22—C23—H23120.0
C14—C15—C16107.11 (19)C11—C10—C9120.3 (2)
C14—C15—H15126.4C11—C10—H10119.8
C16—C15—H15126.4C9—C10—H10119.8
C13—C8—C9118.3 (2)C11—C12—C13120.4 (2)
C13—C8—C7122.84 (19)C11—C12—H12119.8
C9—C8—C7118.81 (19)C13—C12—H12119.8
N3—C20—C21112.46 (16)C25—C24—C23119.9 (2)
N3—C20—H20A109.1C25—C24—H24120.0
C21—C20—H20A109.1C23—C24—H24120.0
C19—N4—C18—O310.3 (3)N1—C7—C8—C9−163.65 (18)
C19—N4—C18—C17−168.55 (18)C14—N3—C20—C21−87.5 (2)
O1—C5—C4—N1−20.5 (3)C17—N3—C20—C2180.6 (2)
N2—C5—C4—N1161.67 (17)C22—C21—C20—N3107.6 (2)
O1—C5—C4—C3150.5 (2)C26—C21—C20—N3−73.0 (3)
N2—C5—C4—C3−27.3 (3)C4—N1—C1—C2−1.4 (2)
C3—C4—N1—C11.2 (2)C7—N1—C1—C2−171.95 (18)
C5—C4—N1—C1173.90 (17)C17—N3—C14—C151.3 (2)
C3—C4—N1—C7171.15 (18)C20—N3—C14—C15171.34 (17)
C5—C4—N1—C7−16.2 (3)C16—C15—C14—N3−0.9 (2)
N1—C4—C3—C2−0.6 (2)C26—C21—C22—C230.0 (3)
C5—C4—C3—C2−172.77 (19)C20—C21—C22—C23179.4 (2)
C14—N3—C17—C16−1.1 (2)C24—C25—C26—C210.2 (4)
C20—N3—C17—C16−170.53 (17)C22—C21—C26—C250.1 (3)
C14—N3—C17—C18−173.73 (17)C20—C21—C26—C25−179.3 (2)
C20—N3—C17—C1816.8 (3)C13—C8—C9—C100.3 (3)
O3—C18—C17—N318.7 (3)C7—C8—C9—C10−179.0 (2)
N4—C18—C17—N3−162.52 (17)N1—C1—C2—C31.0 (2)
O3—C18—C17—C16−152.4 (2)C4—C3—C2—C1−0.2 (2)
N4—C18—C17—C1626.4 (3)C9—C8—C13—C120.4 (4)
O1—C5—N2—C6−6.0 (3)C7—C8—C13—C12179.6 (2)
C4—C5—N2—C6171.8 (2)C21—C22—C23—C24−0.4 (4)
C1—N1—C7—C875.4 (2)C12—C11—C10—C90.3 (4)
C4—N1—C7—C8−93.1 (2)C8—C9—C10—C11−0.6 (4)
N3—C17—C16—C150.5 (2)C10—C11—C12—C130.4 (4)
C18—C17—C16—C15172.66 (19)C8—C13—C12—C11−0.7 (4)
C17—C16—C15—C140.3 (2)C26—C25—C24—C23−0.7 (4)
N1—C7—C8—C1317.1 (3)C22—C23—C24—C250.8 (4)
D—H···AD—HH···AD···AD—H···A
N4—H4···O1i0.87 (3)2.04 (3)2.869 (2)161 (3)
N2—H2A···O3ii0.86 (4)2.10 (4)2.902 (2)154 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯O1i0.87 (3)2.04 (3)2.869 (2)161 (3)
N2—H2A⋯O3ii0.86 (4)2.10 (4)2.902 (2)154 (3)

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-15

4.  4,5-Diaryl-1H-pyrrole-2-carboxylates as combretastatin A-4/lamellarin T hybrids: synthesis and evaluation as anti-mitotic and cytotoxic agents.

Authors:  Martin G Banwell; Ernest Hamel; David C R Hockless; Pascal Verdier-Pinard; Anthony C Willis; David J Wong
Journal:  Bioorg Med Chem       Date:  2006-02-28       Impact factor: 3.641

  4 in total
  3 in total

1.  N-Nitro-1H-pyrrole-2-carboxamide.

Authors:  Long Liu; Chunlin He; Zengxi Li; Chunshan Li; Xiangping Zhang; Suojiang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22

2.  rac-Dimethyl 2-(1H-pyrrole-2-carboxamido)-butane-dioate.

Authors:  Le Zheng; Fang Hu; Xiang Chao Zeng; Kai Ping Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-02

3.  A second monoclinic polymorph of 1-benzyl-N-methyl-1H-pyrrole-2-carboxamide.

Authors:  Chang Jun Wang; Xiang Chao Zeng; Shi Hai Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-02
  3 in total

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