Literature DB >> 21523136

N-Nitro-1H-pyrrole-2-carboxamide.

Long Liu, Chunlin He, Zengxi Li, Chunshan Li, Xiangping Zhang, Suojiang Zhang.   

Abstract

In the title compound, C(5)H(5)N(3)O(3), the nitro group is twisted with respect to the amide group, with C-N-N-O torsion angles of 29.0 (2) and -153.66 (14)°. In the crystal, mol-ecules are linked through inter-molecular N-H⋯O and C-H⋯O hydrogen bonds, forming supra-molecular chains along the a axis. These chains stack in parallel and form distinct layer motifs in the (001) plane.

Entities:  

Year:  2011        PMID: 21523136      PMCID: PMC3051632          DOI: 10.1107/S1600536811002455

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of pyrrole derivatives as anti­microbials, see: Mohamed et al. (2009 ▶). For the structures of similar pyrrole derivatives, see: Zeng et al. (2007 ▶, 2010 ▶); Wang et al. (2010 ▶); Ferreira et al. (2002 ▶). For the synthesis of N,N′-dinitro­urea (DNU), see: Goede et al. (2001 ▶).

Experimental

Crystal data

C5H5N3O3 M = 155.12 Orthorhombic, a = 9.988 (3) Å b = 6.4547 (17) Å c = 19.184 (6) Å V = 1236.8 (6) Å3 Z = 8 Mo Kα radiation μ = 0.14 mm−1 T = 133 K 0.47 × 0.43 × 0.20 mm

Data collection

Rigaku AFC10/Saturn724+ diffractometer 8849 measured reflections 1402 independent reflections 1214 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.106 S = 1.00 1402 reflections 108 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811002455/fj2382sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002455/fj2382Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H5N3O3F(000) = 640
Mr = 155.12Dx = 1.666 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3166 reflections
a = 9.988 (3) Åθ = 3.2–27.5°
b = 6.4547 (17) ŵ = 0.14 mm1
c = 19.184 (6) ÅT = 133 K
V = 1236.8 (6) Å3Platelet, colourless
Z = 80.47 × 0.43 × 0.20 mm
Rigaku AFC10/Saturn724+ diffractometer1214 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.034
graphiteθmax = 27.5°, θmin = 3.9°
Detector resolution: 28.5714 pixels mm-1h = −12→12
φ and ω scansk = −8→8
8849 measured reflectionsl = −24→24
1402 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0596P)2 + 0.536P] where P = (Fo2 + 2Fc2)/3
1402 reflections(Δ/σ)max < 0.001
108 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.17512 (12)0.34028 (18)0.50500 (5)0.0219 (3)
O20.27334 (11)0.3909 (2)0.37665 (6)0.0256 (3)
O30.45611 (12)0.21230 (19)0.36431 (6)0.0255 (3)
N10.25340 (14)0.3489 (2)0.64493 (7)0.0207 (3)
N20.39562 (13)0.3045 (2)0.47037 (7)0.0182 (3)
N30.37143 (13)0.3012 (2)0.39910 (7)0.0178 (3)
C10.31849 (18)0.3310 (3)0.70652 (8)0.0235 (4)
H10.28000.34960.75140.028*
C20.44956 (17)0.2815 (3)0.69312 (8)0.0240 (4)
H20.51730.25810.72700.029*
C30.46594 (16)0.2715 (2)0.62056 (8)0.0198 (4)
H30.54640.24170.59620.024*
C40.34176 (15)0.3137 (2)0.59132 (8)0.0160 (3)
C50.29335 (15)0.3204 (2)0.52027 (8)0.0158 (3)
H1N0.169 (3)0.380 (4)0.6375 (12)0.049 (7)*
H2N0.474 (2)0.250 (3)0.4794 (11)0.032 (6)*
U11U22U33U12U13U23
O10.0140 (6)0.0339 (7)0.0177 (5)−0.0002 (5)−0.0004 (4)0.0003 (5)
O20.0181 (6)0.0398 (7)0.0188 (6)0.0049 (5)−0.0022 (4)0.0071 (5)
O30.0198 (6)0.0381 (7)0.0187 (6)0.0050 (5)0.0027 (5)−0.0052 (5)
N10.0164 (7)0.0276 (7)0.0180 (6)0.0021 (6)0.0007 (5)0.0002 (6)
N20.0132 (6)0.0281 (7)0.0133 (6)0.0016 (5)−0.0022 (5)0.0011 (5)
N30.0153 (6)0.0241 (7)0.0141 (6)−0.0022 (5)0.0004 (5)0.0013 (5)
C10.0273 (9)0.0286 (9)0.0145 (7)−0.0002 (7)0.0011 (6)0.0000 (6)
C20.0223 (8)0.0315 (9)0.0183 (8)−0.0013 (7)−0.0053 (6)0.0015 (6)
C30.0146 (7)0.0257 (8)0.0191 (8)−0.0008 (6)−0.0001 (6)0.0010 (6)
C40.0147 (7)0.0176 (7)0.0158 (7)−0.0013 (6)0.0003 (6)−0.0001 (5)
C50.0148 (7)0.0164 (7)0.0163 (7)−0.0011 (6)−0.0002 (5)−0.0002 (6)
O1—C51.2234 (19)N2—H2N0.88 (2)
O2—N31.2167 (17)C1—C21.372 (2)
O3—N31.2206 (17)C1—H10.9500
N1—C11.354 (2)C2—C31.403 (2)
N1—C41.374 (2)C2—H20.9500
N1—H1N0.88 (3)C3—C41.388 (2)
N2—N31.3886 (18)C3—H30.9500
N2—C51.404 (2)C4—C51.447 (2)
C1—N1—C4109.32 (14)C1—C2—C3107.93 (15)
C1—N1—H1N128.4 (16)C1—C2—H2126.0
C4—N1—H1N122.3 (16)C3—C2—H2126.0
N3—N2—C5123.09 (13)C4—C3—C2106.72 (14)
N3—N2—H2N110.2 (14)C4—C3—H3126.6
C5—N2—H2N123.1 (14)C2—C3—H3126.6
O2—N3—O3126.02 (14)N1—C4—C3107.68 (13)
O2—N3—N2118.77 (13)N1—C4—C5119.04 (14)
O3—N3—N2115.15 (13)C3—C4—C5133.25 (14)
N1—C1—C2108.33 (14)O1—C5—N2123.14 (14)
N1—C1—H1125.8O1—C5—C4123.46 (14)
C2—C1—H1125.8N2—C5—C4113.39 (13)
C5—N2—N3—O229.0 (2)C2—C3—C4—C5−177.88 (16)
C5—N2—N3—O3−153.66 (14)N3—N2—C5—O1−2.7 (2)
C4—N1—C1—C2−0.71 (19)N3—N2—C5—C4177.98 (13)
N1—C1—C2—C30.9 (2)N1—C4—C5—O1−5.8 (2)
C1—C2—C3—C4−0.67 (19)C3—C4—C5—O1172.13 (17)
C1—N1—C4—C30.28 (18)N1—C4—C5—N2173.46 (13)
C1—N1—C4—C5178.72 (14)C3—C4—C5—N2−8.6 (3)
C2—C3—C4—N10.24 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O3i0.88 (3)2.21 (3)3.001 (2)150 (2)
N2—H2N···O1ii0.88 (2)2.11 (2)2.982 (2)171.5 (19)
C3—H3···O1ii0.952.393.269 (2)154
C3—H3···O2ii0.952.483.245 (2)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O3i0.88 (3)2.21 (3)3.001 (2)150 (2)
N2—H2N⋯O1ii0.88 (2)2.11 (2)2.982 (2)171.5 (19)
C3—H3⋯O1ii0.952.393.269 (2)154
C3—H3⋯O2ii0.952.483.245 (2)138

Symmetry codes: (i) ; (ii) .

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