Literature DB >> 22058905

A second monoclinic polymorph of 1-benzyl-N-methyl-1H-pyrrole-2-carboxamide.

Chang Jun Wang1, Xiang Chao Zeng, Shi Hai Xu.   

Abstract

In the title compound, C(13)H(14)N(2)O, the N(pyrrole)-C(H(2))-C-C torsion angle is -7.7 (3)° and the dihedral angle between the pyrrole and benzene rings is 83.6 (2)°. In the crystal, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into chains extending along the c axis. We have previously reported another polymorphic form of this title compound, which has the same space group with different cell parameters: a = 9.8285 (18) Å, b = 23.588 (4) Å, c = 9.9230 (17) Å, β = 90.107 (3)°, Z = 8 and V = 2300.5 (7) Å(3) [Zeng et al. (2010 ▶). Acta Cryst. E66, o2051].

Entities:  

Year:  2011        PMID: 22058905      PMCID: PMC3200776          DOI: 10.1107/S1600536811030364

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Zeng et al. (2010 ▶); For the previously reported polymorph, see: Zeng et al. (2010 ▶) and for a related structure, see: Zeng et al. (2007 ▶).

Experimental

Crystal data

C13H14N2O M = 214.26 Monoclinic, a = 5.4326 (4) Å b = 22.5218 (16) Å c = 9.7358 (5) Å β = 101.676 (6)° V = 1166.55 (13) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.50 × 0.28 × 0.19 mm

Data collection

Oxford Gemini S Ultra area-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.962, T max = 0.985 5327 measured reflections 2504 independent reflections 1597 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.169 S = 1.02 2504 reflections 150 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030364/zk2014sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030364/zk2014Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030364/zk2014Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2ODx = 1.220 Mg m3
Mr = 214.26Melting point: 360 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 5.4326 (4) ÅCell parameters from 1936 reflections
b = 22.5218 (16) Åθ = 3.5–29.2°
c = 9.7358 (5) ŵ = 0.08 mm1
β = 101.676 (6)°T = 293 K
V = 1166.55 (13) Å3Prism, colorless
Z = 40.50 × 0.28 × 0.19 mm
F(000) = 456
Oxford Gemini S Ultra area-detector diffractometer2504 independent reflections
Radiation source: fine-focus sealed tube1597 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 27.0°, θmin = 3.5°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)h = −6→6
Tmin = 0.962, Tmax = 0.985k = −28→22
5327 measured reflectionsl = −12→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0629P)2 + 0.3194P] where P = (Fo2 + 2Fc2)/3
2504 reflections(Δ/σ)max = 0.004
150 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C50.0889 (4)0.28312 (9)0.60936 (19)0.0517 (5)
C40.2716 (4)0.32716 (10)0.6779 (2)0.0543 (5)
N10.4311 (3)0.35726 (9)0.6084 (2)0.0652 (5)
O10.0465 (4)0.27429 (8)0.48276 (15)0.0877 (6)
N2−0.0360 (4)0.25434 (9)0.6916 (2)0.0688 (6)
C80.2613 (4)0.39425 (10)0.3667 (2)0.0590 (6)
C70.4436 (5)0.35414 (12)0.4599 (2)0.0729 (7)
H7A0.41170.31350.42810.088*
H7B0.61270.36430.45010.088*
C90.0783 (4)0.42544 (11)0.4135 (3)0.0681 (6)
H90.06650.42290.50730.082*
C30.3192 (5)0.34701 (11)0.8140 (2)0.0719 (7)
H30.23980.33420.88480.086*
C10.5712 (5)0.39542 (13)0.6999 (3)0.0870 (8)
H10.69160.42130.67870.104*
C11−0.0747 (6)0.46500 (12)0.1851 (3)0.0847 (8)
H11−0.18720.48880.12440.102*
C6−0.2303 (5)0.21166 (12)0.6402 (3)0.0819 (8)
H6A−0.38900.22660.65410.123*
H6B−0.19300.17500.69030.123*
H6C−0.23850.20500.54200.123*
C120.1055 (6)0.43425 (15)0.1372 (3)0.0962 (9)
H120.11600.43680.04320.115*
C10−0.0895 (5)0.46073 (12)0.3229 (3)0.0799 (7)
H10−0.21300.48160.35610.096*
C130.2726 (5)0.39933 (13)0.2273 (3)0.0830 (8)
H130.39600.37870.19330.100*
C20.5084 (5)0.38987 (14)0.8271 (3)0.0911 (9)
H20.57830.41070.90800.109*
H2A0.002 (5)0.2599 (12)0.781 (3)0.092 (9)*
U11U22U33U12U13U23
C50.0605 (12)0.0601 (13)0.0343 (9)0.0096 (10)0.0092 (8)0.0024 (9)
C40.0544 (12)0.0661 (13)0.0408 (10)0.0075 (10)0.0060 (8)0.0031 (9)
N10.0503 (10)0.0815 (14)0.0631 (11)0.0025 (10)0.0095 (9)0.0076 (10)
O10.1194 (15)0.1092 (14)0.0364 (8)−0.0265 (12)0.0205 (8)−0.0120 (8)
N20.0875 (15)0.0786 (14)0.0402 (10)−0.0144 (11)0.0126 (10)0.0021 (10)
C80.0509 (12)0.0652 (14)0.0648 (13)−0.0049 (10)0.0206 (10)0.0075 (11)
C70.0605 (14)0.0972 (19)0.0682 (14)0.0108 (13)0.0297 (11)0.0171 (13)
C90.0659 (14)0.0742 (15)0.0658 (14)0.0021 (12)0.0176 (11)0.0046 (12)
C30.0807 (17)0.0841 (17)0.0457 (12)0.0007 (14)0.0000 (11)−0.0033 (11)
C10.0592 (15)0.097 (2)0.096 (2)−0.0110 (14)−0.0053 (14)0.0067 (17)
C110.091 (2)0.0721 (17)0.0839 (19)0.0001 (15)0.0011 (15)0.0179 (14)
C60.0880 (19)0.0753 (17)0.0811 (17)−0.0126 (14)0.0140 (14)0.0068 (13)
C120.107 (2)0.114 (2)0.0689 (17)0.005 (2)0.0211 (16)0.0241 (17)
C100.0772 (17)0.0731 (16)0.0878 (18)0.0086 (14)0.0127 (14)−0.0016 (15)
C130.0811 (18)0.103 (2)0.0721 (16)0.0089 (16)0.0330 (14)0.0104 (15)
C20.0860 (19)0.097 (2)0.0756 (18)−0.0090 (17)−0.0194 (15)−0.0136 (16)
C5—O11.223 (2)C3—C21.397 (4)
C5—N21.320 (3)C3—H30.9300
C5—C41.465 (3)C1—C21.355 (4)
C4—C31.372 (3)C1—H10.9300
C4—N11.381 (3)C11—C121.356 (4)
N1—C11.356 (3)C11—C101.363 (4)
N1—C71.462 (3)C11—H110.9300
N2—C61.440 (3)C6—H6A0.9600
N2—H2A0.86 (3)C6—H6B0.9600
C8—C91.369 (3)C6—H6C0.9600
C8—C131.376 (3)C12—C131.374 (4)
C8—C71.502 (3)C12—H120.9300
C7—H7A0.9700C10—H100.9300
C7—H7B0.9700C13—H130.9300
C9—C101.384 (3)C2—H20.9300
C9—H90.9300
O1—C5—N2121.1 (2)C2—C3—H3126.1
O1—C5—C4122.79 (19)C2—C1—N1109.3 (2)
N2—C5—C4116.09 (18)C2—C1—H1125.4
C3—C4—N1107.4 (2)N1—C1—H1125.4
C3—C4—C5129.7 (2)C12—C11—C10119.5 (3)
N1—C4—C5122.89 (17)C12—C11—H11120.3
C1—N1—C4108.3 (2)C10—C11—H11120.3
C1—N1—C7123.2 (2)N2—C6—H6A109.5
C4—N1—C7128.4 (2)N2—C6—H6B109.5
C5—N2—C6123.2 (2)H6A—C6—H6B109.5
C5—N2—H2A119.7 (19)N2—C6—H6C109.5
C6—N2—H2A117.1 (18)H6A—C6—H6C109.5
C9—C8—C13117.8 (2)H6B—C6—H6C109.5
C9—C8—C7122.8 (2)C11—C12—C13120.2 (3)
C13—C8—C7119.4 (2)C11—C12—H12119.9
N1—C7—C8114.28 (19)C13—C12—H12119.9
N1—C7—H7A108.7C11—C10—C9120.4 (3)
C8—C7—H7A108.7C11—C10—H10119.8
N1—C7—H7B108.7C9—C10—H10119.8
C8—C7—H7B108.7C12—C13—C8121.4 (3)
H7A—C7—H7B107.6C12—C13—H13119.3
C8—C9—C10120.8 (2)C8—C13—H13119.3
C8—C9—H9119.6C1—C2—C3107.3 (2)
C10—C9—H9119.6C1—C2—H2126.3
C4—C3—C2107.7 (2)C3—C2—H2126.3
C4—C3—H3126.1
O1—C5—C4—C3171.6 (2)C13—C8—C9—C100.1 (4)
N2—C5—C4—C3−6.1 (3)C7—C8—C9—C10−178.4 (2)
O1—C5—C4—N1−7.8 (3)N1—C4—C3—C20.4 (3)
N2—C5—C4—N1174.51 (19)C5—C4—C3—C2−179.1 (2)
C3—C4—N1—C1−0.8 (3)C4—N1—C1—C21.0 (3)
C5—C4—N1—C1178.7 (2)C7—N1—C1—C2176.9 (2)
C3—C4—N1—C7−176.4 (2)C10—C11—C12—C13−0.4 (5)
C5—C4—N1—C73.0 (3)C12—C11—C10—C90.2 (4)
O1—C5—N2—C6−0.7 (4)C8—C9—C10—C11−0.1 (4)
C4—C5—N2—C6177.0 (2)C11—C12—C13—C80.5 (5)
C1—N1—C7—C8−90.4 (3)C9—C8—C13—C12−0.3 (4)
C4—N1—C7—C884.7 (3)C7—C8—C13—C12178.3 (3)
C9—C8—C7—N1−7.7 (3)N1—C1—C2—C3−0.7 (3)
C13—C8—C7—N1173.8 (2)C4—C3—C2—C10.2 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1i0.86 (3)2.08 (3)2.852 (2)149 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1i0.86 (3)2.08 (3)2.852 (2)149 (2)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Benzyl-N-methyl-1H-pyrrole-2-carboxamide.

Authors:  Xiang Chao Zeng; Kai Ping Li; Fang Hu; Le Zheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17
  2 in total
  1 in total

1.  1-(3,5-Dimeth-oxy-benz-yl)-1H-pyrrole.

Authors:  Yueqing Li; Xu Zhang; Shiyong Huo; Wei Huang; Weijie Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-13
  1 in total

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