Literature DB >> 21583561

3-(1-Ethyl-1H-pyrrole-2-carboxamido)propionic acid monohydrate.

Dong Dong Li1, Gui Hong Tang, Xiang Chao Zeng, Gang Huang, Xing Yan Xu.   

Abstract

The title compound, C(10)H(14)N(2)O(3)·H(2)O, was synthesized by alkyl-ation of methyl 3-(1H-pyrrole-2-carboxamido)-propion-ate with ethyl bromide, followed by saponification and acidification. In the crystal structure, inter-molecular O-H⋯O and N-H⋯O hydrogen bonds link the mol-ecules, forming layers parallel to the ac plane.

Entities:  

Year:  2009        PMID: 21583561      PMCID: PMC2977448          DOI: 10.1107/S1600536809026749

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pyrroles sourced from marine organisms, see: Liu et al. (2005 ▶). For the bioactivity of pyrrole derivatives, see: Banwell et al. (2006 ▶); Sosa et al. (2002 ▶). For related structures, see: Zeng et al. (2005 ▶); Liu et al. (2006 ▶); Tang et al. (2008 ▶).

Experimental

Crystal data

C10H14N2O3·H2O M = 228.25 Monoclinic, a = 5.2814 (12) Å b = 31.795 (7) Å c = 7.0226 (16) Å β = 106.392 (4)° V = 1131.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.47 × 0.44 × 0.15 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.953, T max = 0.985 5260 measured reflections 2215 independent reflections 1772 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.163 S = 1.14 2215 reflections 155 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker,1999 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809026749/rz2348sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809026749/rz2348Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H14N2O3·H2OF(000) = 488
Mr = 228.25Dx = 1.340 Mg m3
Monoclinic, P21/cMelting point: 320 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 5.2814 (12) ÅCell parameters from 2595 reflections
b = 31.795 (7) Åθ = 2.6–28.0°
c = 7.0226 (16) ŵ = 0.10 mm1
β = 106.392 (4)°T = 173 K
V = 1131.3 (4) Å3Plate, pale yellow
Z = 40.47 × 0.44 × 0.15 mm
Bruker SMART 1K CCD area-detector diffractometer2215 independent reflections
Radiation source: fine-focus sealed tube1772 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 26.0°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→4
Tmin = 0.953, Tmax = 0.985k = −39→33
5260 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.087P)2 + 0.3989P] where P = (Fo2 + 2Fc2)/3
2215 reflections(Δ/σ)max = 0.001
155 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O2−0.2174 (3)0.48016 (5)0.1312 (3)0.0377 (4)
O10.4540 (3)0.36651 (5)0.1693 (2)0.0350 (4)
N10.9087 (4)0.32234 (6)0.4136 (3)0.0281 (5)
O30.0271 (4)0.53444 (5)0.2775 (3)0.0370 (5)
H3−0.11050.54790.22130.055*
N20.3901 (4)0.39704 (6)0.4423 (3)0.0307 (5)
H20.44580.39940.57230.037*
C40.7462 (4)0.34863 (6)0.4836 (3)0.0254 (5)
C60.1614 (4)0.42138 (7)0.3356 (3)0.0295 (5)
H6A0.02050.41830.40230.035*
H6B0.09360.41030.19900.035*
C50.5200 (4)0.37122 (6)0.3528 (3)0.0250 (5)
C70.2283 (4)0.46754 (7)0.3265 (3)0.0277 (5)
H7A0.31320.47780.46270.033*
H7B0.35670.47070.24850.033*
C8−0.0108 (5)0.49402 (7)0.2343 (3)0.0267 (5)
C30.8518 (5)0.35132 (7)0.6881 (3)0.0319 (6)
H3A0.78240.36730.77610.038*
C90.8797 (5)0.30933 (8)0.2082 (3)0.0361 (6)
H9A1.05160.29870.19800.043*
H9B0.83190.33420.12060.043*
C11.1074 (5)0.30880 (8)0.5705 (4)0.0350 (6)
H11.24460.29010.56290.042*
C100.6725 (6)0.27552 (8)0.1358 (4)0.0407 (6)
H10A0.73170.24930.20840.061*
H10B0.64570.2708−0.00650.061*
H10C0.50600.28460.15850.061*
C21.0782 (5)0.32635 (8)0.7411 (4)0.0366 (6)
H2A1.19120.32230.87150.044*
O40.5768 (4)0.57638 (6)0.1280 (3)0.0343 (4)
H4A0.584 (6)0.5980 (10)0.034 (5)0.057 (9)*
H4B0.465 (7)0.5596 (10)0.074 (5)0.051 (9)*
U11U22U33U12U13U23
O20.0288 (9)0.0372 (9)0.0415 (10)0.0021 (7)0.0009 (8)−0.0031 (7)
O10.0450 (10)0.0355 (9)0.0196 (8)0.0068 (8)0.0013 (7)−0.0001 (6)
N10.0253 (10)0.0322 (10)0.0270 (10)−0.0003 (8)0.0077 (8)0.0016 (7)
O30.0413 (11)0.0273 (8)0.0404 (10)0.0022 (7)0.0087 (8)−0.0014 (7)
N20.0350 (11)0.0324 (10)0.0220 (9)0.0048 (8)0.0038 (8)0.0004 (8)
C40.0285 (12)0.0239 (10)0.0227 (11)−0.0027 (9)0.0057 (9)0.0011 (8)
C60.0255 (12)0.0301 (12)0.0309 (12)0.0011 (9)0.0048 (9)−0.0013 (9)
C50.0290 (11)0.0225 (10)0.0222 (11)−0.0043 (9)0.0049 (9)0.0010 (8)
C70.0255 (11)0.0311 (12)0.0265 (11)−0.0032 (9)0.0076 (9)−0.0026 (9)
C80.0311 (12)0.0292 (11)0.0219 (10)−0.0009 (9)0.0110 (9)−0.0003 (8)
C30.0376 (13)0.0312 (12)0.0235 (11)−0.0002 (10)0.0029 (10)0.0005 (9)
C90.0368 (14)0.0459 (14)0.0306 (12)0.0049 (11)0.0179 (11)0.0016 (10)
C10.0258 (12)0.0371 (13)0.0393 (13)0.0020 (10)0.0044 (10)0.0052 (10)
C100.0506 (16)0.0392 (14)0.0304 (13)0.0054 (12)0.0082 (12)−0.0061 (10)
C20.0341 (13)0.0394 (14)0.0282 (12)−0.0038 (11)−0.0044 (10)0.0039 (10)
O40.0431 (11)0.0282 (9)0.0289 (9)−0.0011 (8)0.0058 (8)0.0009 (7)
O2—C81.210 (3)C7—H7A0.9900
O1—C51.245 (3)C7—H7B0.9900
N1—C11.359 (3)C3—C21.395 (4)
N1—C41.384 (3)C3—H3A0.9500
N1—C91.466 (3)C9—C101.516 (4)
O3—C81.323 (3)C9—H9A0.9900
O3—H30.8400C9—H9B0.9900
N2—C51.335 (3)C1—C21.370 (4)
N2—C61.452 (3)C1—H10.9500
N2—H20.8800C10—H10A0.9800
C4—C31.388 (3)C10—H10B0.9800
C4—C51.473 (3)C10—H10C0.9800
C6—C71.515 (3)C2—H2A0.9500
C6—H6A0.9900O4—H4A0.96 (3)
C6—H6B0.9900O4—H4B0.81 (3)
C7—C81.504 (3)
C1—N1—C4108.54 (19)O2—C8—O3123.0 (2)
C1—N1—C9123.4 (2)O2—C8—C7124.0 (2)
C4—N1—C9128.08 (19)O3—C8—C7113.00 (19)
C8—O3—H3109.5C4—C3—C2107.7 (2)
C5—N2—C6123.23 (18)C4—C3—H3A126.1
C5—N2—H2118.4C2—C3—H3A126.1
C6—N2—H2118.4N1—C9—C10113.3 (2)
N1—C4—C3107.2 (2)N1—C9—H9A108.9
N1—C4—C5123.25 (19)C10—C9—H9A108.9
C3—C4—C5129.3 (2)N1—C9—H9B108.9
N2—C6—C7111.60 (19)C10—C9—H9B108.9
N2—C6—H6A109.3H9A—C9—H9B107.7
C7—C6—H6A109.3N1—C1—C2109.2 (2)
N2—C6—H6B109.3N1—C1—H1125.4
C7—C6—H6B109.3C2—C1—H1125.4
H6A—C6—H6B108.0C9—C10—H10A109.5
O1—C5—N2122.0 (2)C9—C10—H10B109.5
O1—C5—C4121.9 (2)H10A—C10—H10B109.5
N2—C5—C4116.13 (18)C9—C10—H10C109.5
C8—C7—C6112.51 (19)H10A—C10—H10C109.5
C8—C7—H7A109.1H10B—C10—H10C109.5
C6—C7—H7A109.1C1—C2—C3107.3 (2)
C8—C7—H7B109.1C1—C2—H2A126.3
C6—C7—H7B109.1C3—C2—H2A126.3
H7A—C7—H7B107.8H4A—O4—H4B108 (3)
C1—N1—C4—C30.7 (2)N2—C6—C7—C8−174.39 (18)
C9—N1—C4—C3179.4 (2)C6—C7—C8—O2−19.0 (3)
C1—N1—C4—C5175.90 (19)C6—C7—C8—O3161.00 (19)
C9—N1—C4—C5−5.3 (3)N1—C4—C3—C2−0.3 (3)
C5—N2—C6—C7−106.2 (2)C5—C4—C3—C2−175.1 (2)
C6—N2—C5—O10.6 (3)C1—N1—C9—C10101.2 (3)
C6—N2—C5—C4−179.44 (19)C4—N1—C9—C10−77.4 (3)
N1—C4—C5—O13.2 (3)C4—N1—C1—C2−0.8 (3)
C3—C4—C5—O1177.3 (2)C9—N1—C1—C2−179.6 (2)
N1—C4—C5—N2−176.8 (2)N1—C1—C2—C30.6 (3)
C3—C4—C5—N2−2.6 (3)C4—C3—C2—C1−0.2 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O4i0.841.832.669 (3)173
N2—H2···O4ii0.882.283.091 (3)154
O4—H4A···O1iii0.96 (3)1.79 (3)2.737 (2)170 (3)
O4—H4B···O2iv0.81 (3)2.08 (4)2.863 (3)164 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O4i0.841.832.669 (3)173
N2—H2⋯O4ii0.882.283.091 (3)154
O4—H4A⋯O1iii0.96 (3)1.79 (3)2.737 (2)170 (3)
O4—H4B⋯O2iv0.81 (3)2.08 (4)2.863 (3)164 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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