Literature DB >> 21588272

Guanidinium 3-nitro-benzoate.

Graham Smith, Urs D Wermuth.   

Abstract

The title compound, CH(6)N(3) (+)·C(7)H(4)NO(4) (-), an anhydrous guanidinium salt, shows a N-H⋯O hydrogen-bond network in which the guanidinium cation is involved in three cyclic R(2) (1)(6) hydrogen-bonding associations with separate carboxyl-ate O-atom acceptors. Further peripheral associations include a cyclic R(1) (2)(4) cation-anion inter-action, forming inter-linked undulating sheets in the three-dimensional structure.

Entities:  

Year:  2010        PMID: 21588272      PMCID: PMC3007565          DOI: 10.1107/S160053681002581X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of other guanidinium benzoate salts, see: Kleb et al. (1998 ▶); Pereira Silva et al. (2007 ▶, 2010 ▶). For graph-set analysis, see: Etter et al. (1990 ▶).

Experimental

Crystal data

CH6N3C7H4NO4 M = 226.20 Orthorhombic, a = 7.3978 (12) Å b = 10.1302 (12) Å c = 13.7118 (17) Å V = 1027.6 (2) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 297 K 0.30 × 0.30 × 0.20 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.94, T max = 0.98 7455 measured reflections 1252 independent reflections 1092 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.096 S = 1.03 1252 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 1999 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681002581X/bv2146sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002581X/bv2146Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
CH6N3+·C7H4NO4Dx = 1.462 Mg m3
Mr = 226.20Melting point: 514 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2964 reflections
a = 7.3978 (12) Åθ = 3.0–28.9°
b = 10.1302 (12) ŵ = 0.12 mm1
c = 13.7118 (17) ÅT = 297 K
V = 1027.6 (2) Å3Block, colourless
Z = 40.30 × 0.30 × 0.20 mm
F(000) = 472
Oxford Diffraction Gemini-S CCD-detector diffractometer1252 independent reflections
Radiation source: Enhance (Mo) X-ray source1092 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scansθmax = 26.5°, θmin = 3.0°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −9→9
Tmin = 0.94, Tmax = 0.98k = −12→11
7455 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0716P)2] where P = (Fo2 + 2Fc2)/3
1252 reflections(Δ/σ)max < 0.001
169 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O110.8853 (3)0.39642 (19)−0.15616 (11)0.0763 (7)
O120.8391 (3)0.51830 (14)−0.02410 (12)0.0587 (5)
O310.9478 (4)0.2929 (2)0.29189 (13)0.0891 (8)
O320.8919 (4)0.0871 (2)0.30563 (13)0.0879 (8)
N310.9085 (3)0.1871 (2)0.25680 (14)0.0582 (6)
C10.8552 (3)0.28643 (18)−0.00456 (13)0.0395 (5)
C20.8834 (3)0.29418 (19)0.09621 (14)0.0395 (5)
C30.8802 (3)0.1785 (2)0.15053 (15)0.0438 (6)
C40.8496 (3)0.0567 (2)0.10846 (18)0.0546 (7)
C50.8224 (3)0.0507 (2)0.00897 (18)0.0579 (8)
C60.8262 (3)0.1633 (2)−0.04688 (16)0.0487 (6)
C110.8592 (3)0.4098 (2)−0.06632 (14)0.0472 (6)
N1G0.5698 (4)0.7518 (2)0.02372 (14)0.0596 (7)
N2G0.5023 (3)0.7924 (2)0.18458 (16)0.0624 (7)
N3G0.6559 (3)0.6050 (2)0.14213 (17)0.0599 (7)
C1G0.5763 (3)0.7166 (2)0.11723 (14)0.0468 (6)
H20.903900.375200.126200.0470*
H40.84730−0.019500.146300.0660*
H50.80130−0.03050−0.020600.0690*
H60.809200.15720−0.113900.0580*
H11G0.617 (4)0.701 (3)−0.015 (2)0.070 (9)*
H12G0.514 (4)0.821 (3)0.012 (2)0.072 (8)*
H21G0.444 (4)0.869 (3)0.170 (2)0.077 (9)*
H22G0.506 (4)0.767 (3)0.244 (2)0.065 (8)*
H31G0.666 (4)0.588 (3)0.203 (2)0.065 (8)*
H32G0.715 (4)0.563 (3)0.093 (2)0.073 (9)*
U11U22U33U12U13U23
O110.1174 (16)0.0759 (12)0.0357 (8)0.0071 (13)0.0050 (10)0.0078 (8)
O120.0866 (12)0.0375 (7)0.0520 (8)−0.0007 (8)0.0034 (9)0.0074 (6)
O310.148 (2)0.0728 (12)0.0464 (9)−0.0228 (14)−0.0197 (12)0.0015 (9)
O320.1360 (19)0.0687 (11)0.0591 (11)0.0044 (13)0.0017 (12)0.0305 (9)
N310.0728 (11)0.0565 (11)0.0452 (10)0.0004 (11)−0.0036 (9)0.0113 (8)
C10.0411 (9)0.0384 (10)0.0390 (9)−0.0016 (9)0.0000 (9)−0.0014 (8)
C20.0476 (10)0.0313 (8)0.0395 (9)−0.0005 (9)−0.0007 (8)0.0007 (7)
C30.0486 (10)0.0413 (10)0.0415 (10)0.0011 (9)−0.0006 (9)0.0044 (8)
C40.0643 (13)0.0340 (10)0.0656 (13)−0.0007 (10)0.0029 (12)0.0083 (10)
C50.0679 (15)0.0348 (10)0.0710 (15)−0.0073 (10)0.0012 (13)−0.0151 (10)
C60.0527 (11)0.0490 (11)0.0445 (10)−0.0037 (10)0.0000 (9)−0.0100 (9)
C110.0597 (12)0.0444 (10)0.0375 (10)0.0004 (10)0.0016 (10)0.0038 (9)
N1G0.0873 (16)0.0448 (10)0.0467 (12)0.0052 (11)0.0022 (11)0.0093 (9)
N2G0.0885 (15)0.0519 (11)0.0469 (11)0.0123 (12)0.0033 (11)−0.0015 (9)
N3G0.0854 (14)0.0511 (11)0.0433 (10)0.0130 (12)0.0016 (11)0.0069 (9)
C1G0.0588 (12)0.0398 (10)0.0418 (11)−0.0032 (10)−0.0027 (9)0.0025 (9)
O11—C111.254 (2)N3G—H32G0.91 (3)
O12—C111.251 (3)C1—C61.392 (3)
O31—N311.210 (3)C1—C111.510 (3)
O32—N311.221 (3)C1—C21.400 (3)
N31—C31.475 (3)C2—C31.389 (3)
N1G—C1G1.332 (3)C3—C41.381 (3)
N2G—C1G1.320 (3)C4—C51.380 (3)
N3G—C1G1.320 (3)C5—C61.374 (3)
N1G—H12G0.83 (3)C2—H20.9300
N1G—H11G0.82 (3)C4—H40.9300
N2G—H22G0.86 (3)C5—H50.9300
N2G—H21G0.91 (3)C6—H60.9300
N3G—H31G0.86 (3)
O31—N31—O32122.8 (2)C2—C3—C4122.2 (2)
O31—N31—C3118.64 (19)C3—C4—C5118.4 (2)
O32—N31—C3118.60 (19)C4—C5—C6120.8 (2)
C1G—N1G—H12G115.5 (19)C1—C6—C5121.0 (2)
H11G—N1G—H12G128 (3)O11—C11—C1117.67 (18)
C1G—N1G—H11G116 (2)O12—C11—C1117.73 (17)
H21G—N2G—H22G119 (3)O11—C11—O12124.6 (2)
C1G—N2G—H21G122.6 (18)C3—C2—H2121.00
C1G—N2G—H22G119 (2)C1—C2—H2121.00
H31G—N3G—H32G126 (3)C3—C4—H4121.00
C1G—N3G—H32G115.1 (19)C5—C4—H4121.00
C1G—N3G—H31G118 (2)C4—C5—H5120.00
C6—C1—C11120.72 (17)C6—C5—H5120.00
C2—C1—C11120.29 (17)C5—C6—H6120.00
C2—C1—C6118.99 (17)C1—C6—H6119.00
C1—C2—C3118.66 (18)N2G—C1G—N3G120.2 (2)
N31—C3—C4119.27 (19)N1G—C1G—N2G120.2 (2)
N31—C3—C2118.53 (18)N1G—C1G—N3G119.6 (2)
O31—N31—C3—C2−5.8 (3)C2—C1—C11—O12−18.9 (3)
O31—N31—C3—C4174.9 (2)C6—C1—C11—O11−19.1 (3)
O32—N31—C3—C2174.4 (2)C6—C1—C11—O12162.0 (2)
O32—N31—C3—C4−4.9 (3)C1—C2—C3—N31−179.5 (2)
C6—C1—C2—C3−0.4 (3)C1—C2—C3—C4−0.2 (3)
C11—C1—C2—C3−179.5 (2)N31—C3—C4—C5179.6 (2)
C2—C1—C6—C51.0 (3)C2—C3—C4—C50.4 (3)
C11—C1—C6—C5−180.0 (2)C3—C4—C5—C60.2 (3)
C2—C1—C11—O11160.0 (2)C4—C5—C6—C1−0.8 (3)
D—H···AD—HH···AD···AD—H···A
N1G—H11G···O120.82 (3)2.48 (3)3.161 (3)142 (3)
N1G—H12G···O12i0.83 (3)2.09 (3)2.887 (3)162 (3)
N2G—H21G···O11i0.91 (3)2.42 (3)3.292 (3)160 (2)
N2G—H21G···O12i0.91 (3)2.43 (3)3.159 (3)137 (2)
N2G—H22G···O11ii0.86 (3)2.29 (3)3.020 (3)143 (3)
N3G—H31G···O11ii0.86 (3)1.97 (3)2.783 (3)157 (3)
N3G—H32G···O120.91 (3)1.90 (3)2.794 (3)166 (3)
C4—H4···O31iii0.932.573.355 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1G—H11G⋯O120.82 (3)2.48 (3)3.161 (3)142 (3)
N1G—H12G⋯O12i0.83 (3)2.09 (3)2.887 (3)162 (3)
N2G—H21G⋯O11i0.91 (3)2.42 (3)3.292 (3)160 (2)
N2G—H21G⋯O12i0.91 (3)2.43 (3)3.159 (3)137 (2)
N2G—H22G⋯O11ii0.86 (3)2.29 (3)3.020 (3)143 (3)
N3G—H31G⋯O11ii0.86 (3)1.97 (3)2.783 (3)157 (3)
N3G—H32G⋯O120.91 (3)1.90 (3)2.794 (3)166 (3)

Symmetry codes: (i) ; (ii) .

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