Literature DB >> 21588273

Guanidinium 2-phenyl-acetate.

Graham Smith, Urs D Wermuth.   

Abstract

In the structure of the title salt, CH(6)N(3) (+)·C(8)H(7)O(2) (-), the guanidinium cation gives three cyclic hydrogen-bonding inter-actions with O-atom acceptors of three independent phenyl-acetate anions, one R(2) (2)(8) and two R(2) (1)(6), giving one-dimensional columnar structures which extend down the 4(2) axis in the tetra-gonal cell. Within these structures, there are solvent-accessible voids of volume 86.5 Å(3).

Entities:  

Year:  2010        PMID: 21588273      PMCID: PMC3007538          DOI: 10.1107/S1600536810025821

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of simple monocyclic aromatic guanidinium carboxyl­ates, see: Pereira Silva et al. (2007 ▶, 2010 ▶); Kleb et al. (1998 ▶); Smith & Wermuth (2010 ▶). For graph-set analysis, see: Etter et al. (1990 ▶).

Experimental

Crystal data

CH6N3C8H7O2 M = 195.22 Tetragonal, a = 16.8418 (10) Å c = 7.8372 (6) Å V = 2223.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.30 × 0.25 × 0.20 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer 7477 measured reflections 2191 independent reflections 1430 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.101 S = 0.93 2191 reflections 151 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025821/bv2147sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025821/bv2147Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
CH6N3+·C8H7O2Dx = 1.167 Mg m3
Mr = 195.22Melting point: 443 K
Tetragonal, P42/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 4bcCell parameters from 2510 reflections
a = 16.8418 (10) Åθ = 3.1–28.6°
c = 7.8372 (6) ŵ = 0.09 mm1
V = 2223.0 (3) Å3T = 200 K
Z = 8Block, colourless
F(000) = 8320.30 × 0.25 × 0.20 mm
Oxford Diffraction Gemini-S CCD-detector diffractometer1430 reflections with I > 2σ(I)
Radiation source: Enhance (Mo) X-ray sourceRint = 0.027
graphiteθmax = 26.0°, θmin = 3.1°
ω scansh = −20→18
7477 measured reflectionsk = −10→20
2191 independent reflectionsl = −9→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 0.93w = 1/[σ2(Fo2) + (0.0592P)2] where P = (Fo2 + 2Fc2)/3
2191 reflections(Δ/σ)max = 0.001
151 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O210.64098 (7)0.43351 (6)0.19316 (12)0.0534 (4)
O220.62981 (7)0.44279 (6)−0.08684 (12)0.0518 (4)
C10.61757 (8)0.59370 (8)0.25158 (18)0.0364 (5)
C20.68820 (9)0.61788 (9)0.3219 (2)0.0510 (6)
C30.69086 (15)0.64720 (11)0.4853 (3)0.0775 (9)
C40.6222 (2)0.65222 (12)0.5811 (2)0.0918 (11)
C50.55179 (15)0.62730 (13)0.5105 (3)0.0817 (9)
C60.54971 (10)0.59874 (10)0.3487 (2)0.0554 (6)
C110.61473 (11)0.56093 (9)0.07399 (18)0.0550 (6)
C210.62985 (8)0.47232 (9)0.05979 (17)0.0378 (5)
N1G0.77589 (11)0.40624 (9)0.41545 (18)0.0537 (5)
N2G0.77186 (10)0.40368 (9)0.70667 (17)0.0517 (5)
N3G0.66128 (8)0.43990 (8)0.55565 (18)0.0445 (5)
C1G0.73652 (9)0.41692 (8)0.55946 (17)0.0381 (5)
H20.734700.614400.258300.0610*
H30.739000.663700.531500.0930*
H40.623600.672100.691800.1100*
H50.505200.630000.574000.0980*
H60.501600.582300.302600.0670*
H110.653900.588600.005300.0660*
H120.562900.572300.025900.0660*
H11G0.8248 (12)0.3924 (10)0.4193 (18)0.054 (5)*
H12G0.7504 (10)0.4141 (10)0.321 (2)0.063 (5)*
H21G0.7451 (10)0.4104 (9)0.795 (2)0.049 (5)*
H22G0.8201 (12)0.3872 (10)0.710 (2)0.061 (6)*
H31G0.6432 (9)0.4549 (9)0.453 (2)0.049 (5)*
H32G0.6410 (10)0.4547 (10)0.651 (2)0.055 (5)*
U11U22U33U12U13U23
O210.0885 (9)0.0400 (6)0.0317 (6)0.0054 (6)−0.0136 (5)−0.0003 (5)
O220.0728 (8)0.0548 (7)0.0279 (6)−0.0017 (6)0.0036 (5)−0.0026 (5)
C10.0399 (8)0.0297 (8)0.0397 (8)0.0033 (7)−0.0008 (7)0.0028 (6)
C20.0427 (9)0.0458 (10)0.0646 (11)−0.0026 (8)−0.0051 (8)0.0073 (8)
C30.1009 (18)0.0509 (12)0.0807 (15)−0.0161 (12)−0.0466 (13)0.0084 (11)
C40.185 (3)0.0493 (12)0.0411 (11)0.0059 (15)−0.0096 (14)−0.0145 (9)
C50.1019 (18)0.0733 (14)0.0699 (14)0.0135 (13)0.0366 (13)−0.0137 (12)
C60.0406 (10)0.0558 (11)0.0698 (12)0.0006 (8)0.0068 (8)−0.0051 (9)
C110.0797 (13)0.0446 (9)0.0406 (9)0.0064 (9)−0.0023 (8)0.0044 (7)
C210.0400 (8)0.0445 (9)0.0288 (8)0.0002 (7)0.0003 (6)0.0004 (7)
N1G0.0462 (9)0.0832 (11)0.0318 (8)0.0094 (8)0.0017 (7)0.0011 (7)
N2G0.0433 (9)0.0805 (11)0.0312 (8)0.0052 (8)−0.0022 (7)−0.0033 (7)
N3G0.0449 (8)0.0599 (9)0.0288 (8)0.0051 (6)0.0005 (6)0.0030 (6)
C1G0.0415 (9)0.0413 (8)0.0314 (8)−0.0044 (7)−0.0011 (7)−0.0003 (6)
O21—C211.2470 (17)C1—C21.373 (2)
O22—C211.2522 (17)C2—C31.373 (3)
N1G—C1G1.321 (2)C3—C41.381 (4)
N2G—C1G1.317 (2)C4—C51.374 (4)
N3G—C1G1.325 (2)C5—C61.357 (3)
N1G—H11G0.86 (2)C11—C211.518 (2)
N1G—H12G0.866 (16)C2—H20.9300
N2G—H21G0.834 (16)C3—H30.9300
N2G—H22G0.86 (2)C4—H40.9300
N3G—H31G0.897 (16)C5—H50.9300
N3G—H32G0.859 (16)C6—H60.9300
C1—C61.376 (2)C11—H120.9700
C1—C111.498 (2)C11—H110.9700
C1G—N1G—H12G117.4 (11)O21—C21—O22124.14 (14)
H11G—N1G—H12G123.3 (15)C1—C2—H2120.00
C1G—N1G—H11G119.3 (10)C3—C2—H2120.00
C1G—N2G—H22G120.6 (11)C2—C3—H3120.00
H21G—N2G—H22G122.0 (15)C4—C3—H3120.00
C1G—N2G—H21G117.4 (11)C5—C4—H4120.00
C1G—N3G—H32G116.5 (11)C3—C4—H4121.00
H31G—N3G—H32G124.3 (15)C4—C5—H5120.00
C1G—N3G—H31G115.3 (10)C6—C5—H5120.00
C2—C1—C6118.65 (14)C1—C6—H6119.00
C2—C1—C11120.66 (13)C5—C6—H6119.00
C6—C1—C11120.68 (14)C21—C11—H11109.00
C1—C2—C3120.62 (16)C21—C11—H12108.00
C2—C3—C4120.1 (2)H11—C11—H12108.00
C3—C4—C5119.00 (18)C1—C11—H11108.00
C4—C5—C6120.5 (2)C1—C11—H12108.00
C1—C6—C5121.17 (17)N2G—C1G—N3G120.08 (14)
C1—C11—C21115.15 (12)N1G—C1G—N2G119.89 (15)
O21—C21—C11118.63 (12)N1G—C1G—N3G120.02 (14)
O22—C21—C11117.24 (12)
C6—C1—C2—C3−0.6 (2)C1—C2—C3—C40.4 (3)
C11—C1—C2—C3−179.37 (15)C2—C3—C4—C50.2 (3)
C2—C1—C6—C50.3 (2)C3—C4—C5—C6−0.5 (3)
C11—C1—C6—C5179.08 (16)C4—C5—C6—C10.2 (3)
C2—C1—C11—C2186.98 (18)C1—C11—C21—O212.0 (2)
C6—C1—C11—C21−91.75 (18)C1—C11—C21—O22−178.42 (13)
D—H···AD—HH···AD···AD—H···A
N1G—H11G···O22i0.86 (2)2.02 (2)2.876 (2)173.9 (15)
N1G—H12G···O210.866 (16)2.123 (17)2.900 (2)149.0 (15)
N2G—H21G···O22ii0.834 (16)2.219 (17)2.9625 (19)148.5 (15)
N2G—H22G···O21i0.86 (2)1.97 (2)2.827 (2)172.6 (15)
N3G—H31G···O210.897 (16)2.068 (16)2.8634 (17)147.2 (13)
N3G—H32G···O22ii0.859 (16)2.073 (16)2.8520 (17)150.5 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1G—H11G⋯O22i0.86 (2)2.02 (2)2.876 (2)173.9 (15)
N1G—H12G⋯O210.866 (16)2.123 (17)2.900 (2)149.0 (15)
N2G—H21G⋯O22ii0.834 (16)2.219 (17)2.9625 (19)148.5 (15)
N2G—H22G⋯O21i0.86 (2)1.97 (2)2.827 (2)172.6 (15)
N3G—H31G⋯O210.897 (16)2.068 (16)2.8634 (17)147.2 (13)
N3G—H32G⋯O22ii0.859 (16)2.073 (16)2.8520 (17)150.5 (15)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Guanidinium 4-amino-benzoate.

Authors:  P S Pereira Silva; M Ramos Silva; J A Paixão; A Matos Beja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

4.  Guanidinium 3-nitro-benzoate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.