Literature DB >> 21588075

N'-[(E)-(1-Methyl-1H-pyrrol-2-yl)methyl-idene]pyridine-4-carbohydrazide.

Abid Hussain, M Nawaz Tahir, Zahid Shafiq, Muhammad Yaqub, Muhammad Mazhar.   

Abstract

In the title compound, C(12)H(12)N(4)O, the pyridine and pyrrole rings are inclined at an angle of 29.22 (8)° and an intra-molecular C-H⋯N inter-action geneates an S(6) ring. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds, forming (010) C(7) chains. The chains are cross-linked by weak C-H⋯O inter-actions, which generate R(2) (2)(18) ring motifs within an infinite sheet. Finally, two C-H⋯π inter-actions are present, where the C-H groups are from the pyridine ring and π is the pyrrole ring.

Entities:  

Year:  2010        PMID: 21588075      PMCID: PMC3006824          DOI: 10.1107/S1600536810025341

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on Schiff bases containing heterocyclic rings and for related structures, see: Shafiq et al.,(2009a ▶,b ▶); Hussain et al. (2010 ▶) For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H12N4O M = 228.26 Monoclinic, a = 8.2134 (3) Å b = 10.6740 (4) Å c = 13.1332 (4) Å β = 96.938 (2)° V = 1142.95 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.24 × 0.18 × 0.15 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.980, T max = 0.985 12030 measured reflections 2803 independent reflections 2023 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.127 S = 1.04 2803 reflections 155 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025341/hb5530sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025341/hb5530Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N4OF(000) = 480
Mr = 228.26Dx = 1.326 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1770 reflections
a = 8.2134 (3) Åθ = 2.6–28.4°
b = 10.6740 (4) ŵ = 0.09 mm1
c = 13.1332 (4) ÅT = 296 K
β = 96.938 (2)°Prism, red
V = 1142.95 (7) Å30.24 × 0.18 × 0.15 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2803 independent reflections
Radiation source: fine-focus sealed tube2023 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 7.50 pixels mm-1θmax = 28.3°, θmin = 2.5°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −14→14
Tmin = 0.980, Tmax = 0.985l = −17→17
12030 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0618P)2 + 0.235P] where P = (Fo2 + 2Fc2)/3
2803 reflections(Δ/σ)max < 0.001
155 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.68517 (16)0.25900 (11)0.46989 (10)0.0596 (4)
N10.25031 (16)0.01556 (12)0.25463 (10)0.0424 (4)
N20.55170 (15)0.41010 (11)0.37015 (10)0.0388 (4)
N30.65784 (16)0.50489 (12)0.40795 (10)0.0417 (4)
N40.85194 (16)0.74061 (12)0.46127 (10)0.0411 (4)
C10.46019 (16)0.19827 (12)0.34909 (10)0.0315 (4)
C20.40449 (19)0.10059 (13)0.40461 (11)0.0374 (4)
C30.30152 (19)0.01259 (14)0.35500 (12)0.0414 (5)
C40.3056 (2)0.11012 (14)0.20128 (11)0.0421 (5)
C50.40918 (19)0.20229 (14)0.24441 (11)0.0378 (4)
C60.57736 (18)0.29160 (14)0.40312 (11)0.0371 (4)
C70.62947 (19)0.61063 (14)0.36395 (12)0.0416 (5)
C80.72195 (19)0.72388 (14)0.38651 (12)0.0404 (5)
C90.6991 (2)0.83500 (15)0.33312 (13)0.0497 (5)
C100.8163 (2)0.92006 (16)0.37628 (13)0.0539 (6)
C110.9081 (2)0.85957 (15)0.45424 (13)0.0496 (6)
C120.9127 (2)0.65484 (17)0.54194 (14)0.0574 (6)
H20.469240.427170.325510.0466*
H2A0.436350.094450.474820.0449*
H30.26551−0.052680.393520.0497*
H40.272130.113750.131120.0505*
H50.444380.266140.204120.0454*
H70.541040.614880.312680.0500*
H90.619370.850440.278010.0597*
H100.829241.002460.355690.0646*
H110.995750.894290.496280.0595*
H12A0.861080.672340.602170.0860*
H12B1.029280.664690.557370.0860*
H12C0.888280.570430.519950.0860*
U11U22U33U12U13U23
O10.0566 (8)0.0471 (7)0.0666 (8)−0.0071 (6)−0.0275 (6)0.0054 (6)
N10.0438 (8)0.0334 (7)0.0475 (7)−0.0070 (6)−0.0048 (5)−0.0019 (5)
N20.0359 (7)0.0296 (6)0.0480 (7)−0.0057 (5)−0.0070 (5)−0.0040 (5)
N30.0389 (7)0.0336 (7)0.0511 (7)−0.0081 (5)−0.0010 (5)−0.0087 (5)
N40.0427 (7)0.0335 (7)0.0474 (7)−0.0083 (5)0.0062 (6)−0.0074 (5)
C10.0297 (7)0.0266 (7)0.0374 (7)0.0006 (5)0.0003 (5)−0.0018 (5)
C20.0437 (8)0.0331 (8)0.0340 (7)−0.0001 (6)−0.0012 (6)0.0025 (6)
C30.0458 (9)0.0331 (8)0.0449 (8)−0.0071 (7)0.0035 (6)0.0052 (6)
C40.0509 (9)0.0385 (8)0.0341 (7)−0.0045 (7)−0.0061 (6)−0.0011 (6)
C50.0453 (9)0.0318 (7)0.0359 (7)−0.0047 (6)0.0030 (6)0.0032 (6)
C60.0348 (8)0.0343 (8)0.0406 (7)−0.0037 (6)−0.0022 (6)−0.0022 (6)
C70.0380 (8)0.0344 (8)0.0509 (9)−0.0047 (7)−0.0012 (7)−0.0074 (7)
C80.0396 (8)0.0351 (8)0.0470 (8)−0.0051 (6)0.0069 (7)−0.0087 (6)
C90.0580 (10)0.0381 (9)0.0529 (9)−0.0047 (8)0.0064 (8)−0.0029 (7)
C100.0729 (12)0.0331 (8)0.0580 (10)−0.0118 (8)0.0178 (9)−0.0040 (7)
C110.0560 (10)0.0380 (9)0.0570 (10)−0.0198 (8)0.0162 (8)−0.0155 (8)
C120.0538 (11)0.0461 (10)0.0680 (11)−0.0058 (8)−0.0098 (8)0.0025 (9)
O1—C61.219 (2)C7—C81.439 (2)
N1—C31.335 (2)C8—C91.379 (2)
N1—C41.339 (2)C9—C101.393 (2)
N2—N31.3877 (18)C10—C111.359 (2)
N2—C61.3453 (19)C2—H2A0.9300
N3—C71.277 (2)C3—H30.9300
N4—C81.372 (2)C4—H40.9300
N4—C111.358 (2)C5—H50.9300
N4—C121.443 (2)C7—H70.9300
N2—H20.8600C9—H90.9300
C1—C21.3815 (19)C10—H100.9300
C1—C51.3886 (19)C11—H110.9300
C1—C61.502 (2)C12—H12A0.9600
C2—C31.374 (2)C12—H12B0.9600
C4—C51.377 (2)C12—H12C0.9600
C3—N1—C4116.64 (13)N4—C11—C10109.47 (15)
N3—N2—C6120.21 (12)C1—C2—H2A120.00
N2—N3—C7114.22 (13)C3—C2—H2A120.00
C8—N4—C11108.33 (13)N1—C3—H3118.00
C8—N4—C12127.81 (13)C2—C3—H3118.00
C11—N4—C12123.58 (14)N1—C4—H4118.00
C6—N2—H2120.00C5—C4—H4118.00
N3—N2—H2120.00C1—C5—H5121.00
C2—C1—C6119.03 (12)C4—C5—H5121.00
C2—C1—C5117.80 (13)N3—C7—H7117.00
C5—C1—C6123.13 (12)C8—C7—H7117.00
C1—C2—C3119.32 (13)C8—C9—H9126.00
N1—C3—C2123.67 (14)C10—C9—H9126.00
N1—C4—C5123.72 (14)C9—C10—H10127.00
C1—C5—C4118.86 (13)C11—C10—H10127.00
N2—C6—C1113.89 (12)N4—C11—H11125.00
O1—C6—N2124.87 (14)C10—C11—H11125.00
O1—C6—C1121.24 (13)N4—C12—H12A109.00
N3—C7—C8125.91 (15)N4—C12—H12B109.00
N4—C8—C9107.35 (13)N4—C12—H12C109.00
C7—C8—C9125.57 (15)H12A—C12—H12B109.00
N4—C8—C7127.04 (14)H12A—C12—H12C109.00
C8—C9—C10107.99 (15)H12B—C12—H12C109.00
C9—C10—C11106.87 (15)
C4—N1—C3—C20.6 (2)C2—C1—C5—C40.4 (2)
C3—N1—C4—C5−0.5 (2)C6—C1—C5—C4177.90 (14)
C6—N2—N3—C7173.81 (14)C2—C1—C6—O138.1 (2)
N3—N2—C6—O14.1 (2)C2—C1—C6—N2−142.47 (14)
N3—N2—C6—C1−175.38 (12)C5—C1—C6—O1−139.38 (16)
N2—N3—C7—C8−178.82 (14)C5—C1—C6—N240.08 (19)
C11—N4—C8—C7177.64 (15)C1—C2—C3—N1−0.2 (2)
C11—N4—C8—C90.04 (17)N1—C4—C5—C10.0 (2)
C12—N4—C8—C7−8.4 (3)N3—C7—C8—N4−2.9 (3)
C12—N4—C8—C9174.00 (15)N3—C7—C8—C9174.33 (16)
C8—N4—C11—C100.12 (19)N4—C8—C9—C10−0.18 (18)
C12—N4—C11—C10−174.15 (15)C7—C8—C9—C10−177.82 (15)
C5—C1—C2—C3−0.3 (2)C8—C9—C10—C110.25 (19)
C6—C1—C2—C3−177.89 (14)C9—C10—C11—N4−0.23 (19)
Cg1 is the centroid of the C8—C11/N4 ring.
D—H···AD—HH···AD···AD—H···A
N2—H2···N1i0.862.193.0205 (18)163
C4—H4···O1ii0.932.543.3821 (19)150
C12—H12B···O1iii0.962.553.450 (2)156
C12—H12C···N30.962.363.025 (2)126
C2—H2A···Cg1iv0.932.833.3258 (16)114
C5—H5···Cg1v0.932.713.4669 (17)139
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C8—C11/N4 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N1i0.862.193.0205 (18)163
C4—H4⋯O1ii0.932.543.3821 (19)150
C12—H12B⋯O1iii0.962.553.450 (2)156
C12—H12C⋯N30.962.363.025 (2)126
C2—H2ACg1iv0.932.833.3258 (16)114
C5—H5⋯Cg1v0.932.713.4669 (17)139

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Erratum: N'-[(E)-(1-Methyl-1H-pyrrol-2-yl)methyl-idene]pyridine-4-carbohydrazide. Corrigendum.

Authors:  Abid Hussain; M Nawaz Tahir; Zahid Shafiq; Muhammad Yaqub; Mazhar Hussain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11
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