| Literature DB >> 21588075 |
Abid Hussain, M Nawaz Tahir, Zahid Shafiq, Muhammad Yaqub, Muhammad Mazhar.
Abstract
In the title compound, C(12)H(12)N(4)O, the pyridine and pyrrole rings are inclined at an angle of 29.22 (8)° and an intra-molecular C-H⋯N inter-action geneates an S(6) ring. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds, forming (010) C(7) chains. The chains are cross-linked by weak C-H⋯O inter-actions, which generate R(2) (2)(18) ring motifs within an infinite sheet. Finally, two C-H⋯π inter-actions are present, where the C-H groups are from the pyridine ring and π is the pyrrole ring.Entities:
Year: 2010 PMID: 21588075 PMCID: PMC3006824 DOI: 10.1107/S1600536810025341
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H12N4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1770 reflections |
| θ = 2.6–28.4° | |
| µ = 0.09 mm−1 | |
| β = 96.938 (2)° | Prism, red |
| 0.24 × 0.18 × 0.15 mm | |
| Bruker Kappa APEXII CCD diffractometer | 2803 independent reflections |
| Radiation source: fine-focus sealed tube | 2023 reflections with |
| graphite | |
| Detector resolution: 7.50 pixels mm-1 | θmax = 28.3°, θmin = 2.5° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 12030 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2803 reflections | (Δ/σ)max < 0.001 |
| 155 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| O1 | 0.68517 (16) | 0.25900 (11) | 0.46989 (10) | 0.0596 (4) | |
| N1 | 0.25031 (16) | 0.01556 (12) | 0.25463 (10) | 0.0424 (4) | |
| N2 | 0.55170 (15) | 0.41010 (11) | 0.37015 (10) | 0.0388 (4) | |
| N3 | 0.65784 (16) | 0.50489 (12) | 0.40795 (10) | 0.0417 (4) | |
| N4 | 0.85194 (16) | 0.74061 (12) | 0.46127 (10) | 0.0411 (4) | |
| C1 | 0.46019 (16) | 0.19827 (12) | 0.34909 (10) | 0.0315 (4) | |
| C2 | 0.40449 (19) | 0.10059 (13) | 0.40461 (11) | 0.0374 (4) | |
| C3 | 0.30152 (19) | 0.01259 (14) | 0.35500 (12) | 0.0414 (5) | |
| C4 | 0.3056 (2) | 0.11012 (14) | 0.20128 (11) | 0.0421 (5) | |
| C5 | 0.40918 (19) | 0.20229 (14) | 0.24441 (11) | 0.0378 (4) | |
| C6 | 0.57736 (18) | 0.29160 (14) | 0.40312 (11) | 0.0371 (4) | |
| C7 | 0.62947 (19) | 0.61063 (14) | 0.36395 (12) | 0.0416 (5) | |
| C8 | 0.72195 (19) | 0.72388 (14) | 0.38651 (12) | 0.0404 (5) | |
| C9 | 0.6991 (2) | 0.83500 (15) | 0.33312 (13) | 0.0497 (5) | |
| C10 | 0.8163 (2) | 0.92006 (16) | 0.37628 (13) | 0.0539 (6) | |
| C11 | 0.9081 (2) | 0.85957 (15) | 0.45424 (13) | 0.0496 (6) | |
| C12 | 0.9127 (2) | 0.65484 (17) | 0.54194 (14) | 0.0574 (6) | |
| H2 | 0.46924 | 0.42717 | 0.32551 | 0.0466* | |
| H2A | 0.43635 | 0.09445 | 0.47482 | 0.0449* | |
| H3 | 0.26551 | −0.05268 | 0.39352 | 0.0497* | |
| H4 | 0.27213 | 0.11375 | 0.13112 | 0.0505* | |
| H5 | 0.44438 | 0.26614 | 0.20412 | 0.0454* | |
| H7 | 0.54104 | 0.61488 | 0.31268 | 0.0500* | |
| H9 | 0.61937 | 0.85044 | 0.27801 | 0.0597* | |
| H10 | 0.82924 | 1.00246 | 0.35569 | 0.0646* | |
| H11 | 0.99575 | 0.89429 | 0.49628 | 0.0595* | |
| H12A | 0.86108 | 0.67234 | 0.60217 | 0.0860* | |
| H12B | 1.02928 | 0.66469 | 0.55737 | 0.0860* | |
| H12C | 0.88828 | 0.57043 | 0.51995 | 0.0860* |
| O1 | 0.0566 (8) | 0.0471 (7) | 0.0666 (8) | −0.0071 (6) | −0.0275 (6) | 0.0054 (6) |
| N1 | 0.0438 (8) | 0.0334 (7) | 0.0475 (7) | −0.0070 (6) | −0.0048 (5) | −0.0019 (5) |
| N2 | 0.0359 (7) | 0.0296 (6) | 0.0480 (7) | −0.0057 (5) | −0.0070 (5) | −0.0040 (5) |
| N3 | 0.0389 (7) | 0.0336 (7) | 0.0511 (7) | −0.0081 (5) | −0.0010 (5) | −0.0087 (5) |
| N4 | 0.0427 (7) | 0.0335 (7) | 0.0474 (7) | −0.0083 (5) | 0.0062 (6) | −0.0074 (5) |
| C1 | 0.0297 (7) | 0.0266 (7) | 0.0374 (7) | 0.0006 (5) | 0.0003 (5) | −0.0018 (5) |
| C2 | 0.0437 (8) | 0.0331 (8) | 0.0340 (7) | −0.0001 (6) | −0.0012 (6) | 0.0025 (6) |
| C3 | 0.0458 (9) | 0.0331 (8) | 0.0449 (8) | −0.0071 (7) | 0.0035 (6) | 0.0052 (6) |
| C4 | 0.0509 (9) | 0.0385 (8) | 0.0341 (7) | −0.0045 (7) | −0.0061 (6) | −0.0011 (6) |
| C5 | 0.0453 (9) | 0.0318 (7) | 0.0359 (7) | −0.0047 (6) | 0.0030 (6) | 0.0032 (6) |
| C6 | 0.0348 (8) | 0.0343 (8) | 0.0406 (7) | −0.0037 (6) | −0.0022 (6) | −0.0022 (6) |
| C7 | 0.0380 (8) | 0.0344 (8) | 0.0509 (9) | −0.0047 (7) | −0.0012 (7) | −0.0074 (7) |
| C8 | 0.0396 (8) | 0.0351 (8) | 0.0470 (8) | −0.0051 (6) | 0.0069 (7) | −0.0087 (6) |
| C9 | 0.0580 (10) | 0.0381 (9) | 0.0529 (9) | −0.0047 (8) | 0.0064 (8) | −0.0029 (7) |
| C10 | 0.0729 (12) | 0.0331 (8) | 0.0580 (10) | −0.0118 (8) | 0.0178 (9) | −0.0040 (7) |
| C11 | 0.0560 (10) | 0.0380 (9) | 0.0570 (10) | −0.0198 (8) | 0.0162 (8) | −0.0155 (8) |
| C12 | 0.0538 (11) | 0.0461 (10) | 0.0680 (11) | −0.0058 (8) | −0.0098 (8) | 0.0025 (9) |
| O1—C6 | 1.219 (2) | C7—C8 | 1.439 (2) |
| N1—C3 | 1.335 (2) | C8—C9 | 1.379 (2) |
| N1—C4 | 1.339 (2) | C9—C10 | 1.393 (2) |
| N2—N3 | 1.3877 (18) | C10—C11 | 1.359 (2) |
| N2—C6 | 1.3453 (19) | C2—H2A | 0.9300 |
| N3—C7 | 1.277 (2) | C3—H3 | 0.9300 |
| N4—C8 | 1.372 (2) | C4—H4 | 0.9300 |
| N4—C11 | 1.358 (2) | C5—H5 | 0.9300 |
| N4—C12 | 1.443 (2) | C7—H7 | 0.9300 |
| N2—H2 | 0.8600 | C9—H9 | 0.9300 |
| C1—C2 | 1.3815 (19) | C10—H10 | 0.9300 |
| C1—C5 | 1.3886 (19) | C11—H11 | 0.9300 |
| C1—C6 | 1.502 (2) | C12—H12A | 0.9600 |
| C2—C3 | 1.374 (2) | C12—H12B | 0.9600 |
| C4—C5 | 1.377 (2) | C12—H12C | 0.9600 |
| C3—N1—C4 | 116.64 (13) | N4—C11—C10 | 109.47 (15) |
| N3—N2—C6 | 120.21 (12) | C1—C2—H2A | 120.00 |
| N2—N3—C7 | 114.22 (13) | C3—C2—H2A | 120.00 |
| C8—N4—C11 | 108.33 (13) | N1—C3—H3 | 118.00 |
| C8—N4—C12 | 127.81 (13) | C2—C3—H3 | 118.00 |
| C11—N4—C12 | 123.58 (14) | N1—C4—H4 | 118.00 |
| C6—N2—H2 | 120.00 | C5—C4—H4 | 118.00 |
| N3—N2—H2 | 120.00 | C1—C5—H5 | 121.00 |
| C2—C1—C6 | 119.03 (12) | C4—C5—H5 | 121.00 |
| C2—C1—C5 | 117.80 (13) | N3—C7—H7 | 117.00 |
| C5—C1—C6 | 123.13 (12) | C8—C7—H7 | 117.00 |
| C1—C2—C3 | 119.32 (13) | C8—C9—H9 | 126.00 |
| N1—C3—C2 | 123.67 (14) | C10—C9—H9 | 126.00 |
| N1—C4—C5 | 123.72 (14) | C9—C10—H10 | 127.00 |
| C1—C5—C4 | 118.86 (13) | C11—C10—H10 | 127.00 |
| N2—C6—C1 | 113.89 (12) | N4—C11—H11 | 125.00 |
| O1—C6—N2 | 124.87 (14) | C10—C11—H11 | 125.00 |
| O1—C6—C1 | 121.24 (13) | N4—C12—H12A | 109.00 |
| N3—C7—C8 | 125.91 (15) | N4—C12—H12B | 109.00 |
| N4—C8—C9 | 107.35 (13) | N4—C12—H12C | 109.00 |
| C7—C8—C9 | 125.57 (15) | H12A—C12—H12B | 109.00 |
| N4—C8—C7 | 127.04 (14) | H12A—C12—H12C | 109.00 |
| C8—C9—C10 | 107.99 (15) | H12B—C12—H12C | 109.00 |
| C9—C10—C11 | 106.87 (15) | ||
| C4—N1—C3—C2 | 0.6 (2) | C2—C1—C5—C4 | 0.4 (2) |
| C3—N1—C4—C5 | −0.5 (2) | C6—C1—C5—C4 | 177.90 (14) |
| C6—N2—N3—C7 | 173.81 (14) | C2—C1—C6—O1 | 38.1 (2) |
| N3—N2—C6—O1 | 4.1 (2) | C2—C1—C6—N2 | −142.47 (14) |
| N3—N2—C6—C1 | −175.38 (12) | C5—C1—C6—O1 | −139.38 (16) |
| N2—N3—C7—C8 | −178.82 (14) | C5—C1—C6—N2 | 40.08 (19) |
| C11—N4—C8—C7 | 177.64 (15) | C1—C2—C3—N1 | −0.2 (2) |
| C11—N4—C8—C9 | 0.04 (17) | N1—C4—C5—C1 | 0.0 (2) |
| C12—N4—C8—C7 | −8.4 (3) | N3—C7—C8—N4 | −2.9 (3) |
| C12—N4—C8—C9 | 174.00 (15) | N3—C7—C8—C9 | 174.33 (16) |
| C8—N4—C11—C10 | 0.12 (19) | N4—C8—C9—C10 | −0.18 (18) |
| C12—N4—C11—C10 | −174.15 (15) | C7—C8—C9—C10 | −177.82 (15) |
| C5—C1—C2—C3 | −0.3 (2) | C8—C9—C10—C11 | 0.25 (19) |
| C6—C1—C2—C3 | −177.89 (14) | C9—C10—C11—N4 | −0.23 (19) |
| Cg1 is the centroid of the C8—C11/N4 ring. |
| H··· | ||||
| N2—H2···N1i | 0.86 | 2.19 | 3.0205 (18) | 163 |
| C4—H4···O1ii | 0.93 | 2.54 | 3.3821 (19) | 150 |
| C12—H12B···O1iii | 0.96 | 2.55 | 3.450 (2) | 156 |
| C12—H12C···N3 | 0.96 | 2.36 | 3.025 (2) | 126 |
| C2—H2A···Cg1iv | 0.93 | 2.83 | 3.3258 (16) | 114 |
| C5—H5···Cg1v | 0.93 | 2.71 | 3.4669 (17) | 139 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C8—C11/N4 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯N1i | 0.86 | 2.19 | 3.0205 (18) | 163 |
| C4—H4⋯O1ii | 0.93 | 2.54 | 3.3821 (19) | 150 |
| C12—H12 | 0.96 | 2.55 | 3.450 (2) | 156 |
| C12—H12 | 0.96 | 2.36 | 3.025 (2) | 126 |
| C2—H2 | 0.93 | 2.83 | 3.3258 (16) | 114 |
| C5—H5⋯ | 0.93 | 2.71 | 3.4669 (17) | 139 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .