Literature DB >> 21577946

N'-[(E)-(4-Bromo-2-thienyl)methyl-ene]isonicotinohydrazide.

Zahid Shafiq, Muhammad Yaqub, M Nawaz Tahir, Abid Hussain, M Saeed Iqbal.   

Abstract

In title compound, C(11)H(8)BrN(3)OS, the dihedral angle between the two aromatic rings is 27.61 (14)° and the Br atom is disordered over two sites with an occupancy ratio of 0.804 (2):0.196 (2). In the crystal, the mol-ecules are linked by N-H⋯O, C-H⋯O and C-H⋯N inter-actions, resulting in chains.

Entities:  

Year:  2009        PMID: 21577946      PMCID: PMC2970269          DOI: 10.1107/S160053680903709X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Jing et al. (2007 ▶); Shafiq et al. (2009 ▶); Wang et al. (2007 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H8BrN3OS M = 310.17 Orthorhombic, a = 14.3507 (6) Å b = 48.732 (2) Å c = 7.2115 (3) Å V = 5043.3 (4) Å3 Z = 16 Mo Kα radiation μ = 3.41 mm−1 T = 296 K 0.26 × 0.14 × 0.12 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.567, T max = 0.666 12209 measured reflections 2837 independent reflections 1954 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.113 S = 1.04 2837 reflections 158 parameters 2 restraints H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.48 e Å−3 Absolute structure: Flack (1983 ▶), 1205 Friedal Pairs Flack parameter: −0.002 (13) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680903709X/hb5101sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903709X/hb5101Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8BrN3OSF(000) = 2464
Mr = 310.17Dx = 1.634 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 2837 reflections
a = 14.3507 (6) Åθ = 3.0–27.9°
b = 48.732 (2) ŵ = 3.41 mm1
c = 7.2115 (3) ÅT = 296 K
V = 5043.3 (4) Å3Cut needle, light yellow
Z = 160.26 × 0.14 × 0.12 mm
Bruker Kappa APEXII CCD diffractometer2837 independent reflections
Radiation source: fine-focus sealed tube1954 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 7.50 pixels mm-1θmax = 27.9°, θmin = 3.0°
ω scansh = −18→18
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −64→63
Tmin = 0.567, Tmax = 0.666l = −9→9
12209 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0415P)2 + 9.3783P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2837 reflectionsΔρmax = 0.56 e Å3
158 parametersΔρmin = −0.48 e Å3
2 restraintsAbsolute structure: Flack (1983), 1205 Friedal Pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.002 (13)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br1A0.42406 (6)0.25903 (2)−0.16312 (17)0.0946 (5)0.804 (2)
Br1B0.4270 (3)0.26462 (9)−0.0262 (10)0.0946 (5)0.196 (2)
S10.44553 (8)0.17467 (2)0.0252 (2)0.0549 (4)
O10.27773 (19)0.09307 (6)0.2899 (5)0.0505 (10)
N1−0.0545 (3)0.06098 (14)0.3270 (10)0.099 (3)
N20.1935 (2)0.12740 (7)0.1634 (5)0.0406 (11)
N30.2717 (2)0.14261 (7)0.1259 (5)0.0424 (11)
C10.1129 (3)0.08803 (8)0.2787 (6)0.0418 (14)
C20.0333 (3)0.10184 (10)0.3343 (7)0.0527 (16)
C3−0.0467 (3)0.08712 (15)0.3572 (10)0.080 (3)
C40.0234 (5)0.04764 (13)0.2750 (10)0.092 (3)
C50.1084 (4)0.06041 (10)0.2517 (8)0.0620 (19)
C60.2039 (3)0.10290 (8)0.2448 (6)0.0382 (14)
C70.2561 (3)0.16678 (9)0.0670 (7)0.0460 (16)
C80.3315 (3)0.18499 (9)0.0213 (7)0.0470 (14)
C90.3246 (3)0.21142 (11)−0.0287 (9)0.068 (2)
C100.4113 (3)0.22347 (9)−0.0687 (9)0.0643 (19)
C110.4832 (3)0.20625 (11)−0.0432 (9)0.0653 (18)
H20.139030.133460.135200.0485*
H2A0.034420.120660.355480.0632*
H3−0.099350.096500.397330.0962*
H40.019700.028850.253760.1106*
H50.161100.050440.218470.0746*
H70.195000.172780.053270.0554*
H90.268310.22080−0.036120.0813*
H110.545380.21094−0.060450.0783*
U11U22U33U12U13U23
Br1A0.0709 (4)0.0603 (5)0.1526 (14)−0.0081 (3)0.0142 (7)0.0410 (7)
Br1B0.0709 (4)0.0603 (5)0.1526 (14)−0.0081 (3)0.0142 (7)0.0410 (7)
S10.0358 (5)0.0516 (7)0.0773 (9)0.0035 (5)−0.0020 (6)0.0081 (6)
O10.0291 (14)0.0495 (17)0.073 (2)0.0004 (12)−0.0118 (16)0.0034 (17)
N10.056 (3)0.111 (5)0.130 (5)−0.041 (3)−0.031 (3)0.053 (4)
N20.0250 (16)0.0437 (19)0.053 (2)−0.0055 (14)−0.0080 (15)0.0056 (16)
N30.0281 (16)0.049 (2)0.050 (2)−0.0061 (15)−0.0043 (15)0.0029 (16)
C10.0315 (19)0.048 (2)0.046 (3)−0.0076 (17)−0.0167 (19)0.007 (2)
C20.037 (2)0.062 (3)0.059 (3)0.0025 (19)−0.002 (2)0.022 (2)
C30.039 (3)0.108 (5)0.094 (5)−0.011 (3)−0.012 (3)0.042 (4)
C40.091 (5)0.068 (4)0.118 (6)−0.032 (3)−0.041 (4)0.030 (4)
C50.062 (3)0.046 (3)0.078 (4)−0.007 (2)−0.026 (3)0.012 (3)
C60.0276 (19)0.043 (2)0.044 (3)−0.0029 (16)−0.0040 (17)−0.0027 (19)
C70.029 (2)0.056 (3)0.053 (3)−0.0051 (18)−0.0089 (19)0.011 (2)
C80.034 (2)0.049 (2)0.058 (3)0.0006 (17)−0.008 (2)0.006 (2)
C90.039 (2)0.057 (3)0.107 (5)0.002 (2)−0.008 (3)0.026 (3)
C100.045 (3)0.046 (3)0.102 (4)−0.007 (2)−0.001 (3)0.017 (3)
C110.035 (2)0.063 (3)0.098 (4)−0.003 (2)0.000 (3)0.015 (3)
Br1A—C101.871 (5)C2—C31.364 (7)
Br1B—C102.041 (6)C4—C51.380 (9)
S1—C81.712 (4)C7—C81.438 (6)
S1—C111.704 (5)C8—C91.341 (7)
O1—C61.207 (5)C9—C101.406 (6)
N1—C31.297 (10)C10—C111.343 (6)
N1—C41.347 (9)C2—H2A0.9300
N2—N31.372 (4)C3—H30.9300
N2—C61.339 (5)C4—H40.9300
N3—C71.272 (6)C5—H50.9300
N2—H20.8600C7—H70.9300
C1—C21.385 (6)C9—H90.9300
C1—C51.362 (6)C11—H110.9300
C1—C61.513 (6)
C8—S1—C1191.9 (2)Br1A—C10—C11123.6 (4)
C3—N1—C4116.7 (5)Br1B—C10—C9118.5 (4)
N3—N2—C6118.5 (3)C9—C10—C11113.0 (4)
N2—N3—C7115.0 (3)Br1B—C10—C11120.6 (4)
C6—N2—H2121.00Br1A—C10—C9123.3 (4)
N3—N2—H2121.00S1—C11—C10111.1 (3)
C2—C1—C6121.7 (4)C1—C2—H2A121.00
C5—C1—C6119.4 (4)C3—C2—H2A121.00
C2—C1—C5118.9 (4)N1—C3—H3118.00
C1—C2—C3118.3 (5)C2—C3—H3118.00
N1—C3—C2124.7 (5)N1—C4—H4118.00
N1—C4—C5123.4 (6)C5—C4—H4118.00
C1—C5—C4118.1 (5)C1—C5—H5121.00
N2—C6—C1113.7 (3)C4—C5—H5121.00
O1—C6—C1121.6 (4)N3—C7—H7120.00
O1—C6—N2124.7 (4)C8—C7—H7119.00
N3—C7—C8121.0 (4)C8—C9—H9123.00
C7—C8—C9126.8 (4)C10—C9—H9123.00
S1—C8—C7122.3 (3)S1—C11—H11124.00
S1—C8—C9110.9 (3)C10—C11—H11124.00
C8—C9—C10113.0 (4)
C11—S1—C8—C7179.5 (5)C2—C1—C6—N2−38.5 (6)
C11—S1—C8—C9−0.5 (5)C5—C1—C6—O1−39.9 (7)
C8—S1—C11—C10−0.5 (5)C5—C1—C6—N2140.6 (5)
C4—N1—C3—C22.2 (11)C1—C2—C3—N1−1.5 (10)
C3—N1—C4—C5−0.6 (11)N1—C4—C5—C1−1.6 (10)
C6—N2—N3—C7−172.8 (4)N3—C7—C8—S15.3 (7)
N3—N2—C6—O10.6 (6)N3—C7—C8—C9−174.7 (5)
N3—N2—C6—C1−179.9 (3)S1—C8—C9—C101.4 (7)
N2—N3—C7—C8−179.7 (4)C7—C8—C9—C10−178.6 (5)
C5—C1—C2—C3−0.9 (8)C8—C9—C10—Br1A174.2 (4)
C6—C1—C2—C3178.3 (5)C8—C9—C10—C11−1.9 (8)
C2—C1—C5—C42.2 (8)Br1A—C10—C11—S1−174.6 (3)
C6—C1—C5—C4−176.9 (5)C9—C10—C11—S11.4 (7)
C2—C1—C6—O1141.0 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.862.082.920 (4)165
C7—H7···O1i0.932.523.318 (5)144
C11—H11···N1ii0.932.603.277 (7)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.862.082.920 (4)165
C7—H7⋯O1i0.932.523.318 (5)144
C11—H11⋯N1ii0.932.603.277 (7)130

Symmetry codes: (i) ; (ii) .

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