Literature DB >> 21588074

N'-[(E)-1-(5-Chloro-2-hy-droxy-phen-yl)ethyl-idene]pyridine-3-carbohydrazide monohydrate.

Abid Hussain, Zahid Shafiq, M Nawaz Tahir, Muhammad Yaqub.   

Abstract

In the title compound, C(14)H(12)ClN(3)O(2)·H(2)O, the benzene ring and the pyridine rings are oriented at a dihedral angle of 57.73 (12)° and an intra-molecular O-H⋯N hydrogen bond generates an S(6) ring. In the crystal, the water mol-ecule forms O-H⋯O and O-H⋯N hydrogen bonds to the organic mol-ecule, leading to chains containing R(4) (4)(16) loops. In addition, weak aromatic π-π stacking inter-actions between the centroids of pyridine rings [at distance of 3.864 (2) and 4.013 (2) Å] and C-H⋯π inter-actions occur.

Entities:  

Year:  2010        PMID: 21588074      PMCID: PMC3006986          DOI: 10.1107/S1600536810025213

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff bases and for related structures, see: Shafiq et al. (2009a ▶,b ▶): For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H12ClN3O2·H2O M = 307.73 Triclinic, a = 7.1693 (5) Å b = 7.4964 (4) Å c = 14.5966 (9) Å α = 90.138 (2)° β = 95.835 (1)° γ = 115.755 (2)° V = 701.94 (8) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 296 K 0.28 × 0.18 × 0.14 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.942, T max = 0.959 10105 measured reflections 2491 independent reflections 2151 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.135 S = 1.17 2491 reflections 198 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025213/hb5528sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025213/hb5528Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12ClN3O2·H2OZ = 2
Mr = 307.73F(000) = 320
Triclinic, P1Dx = 1.456 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1693 (5) ÅCell parameters from 1770 reflections
b = 7.4964 (4) Åθ = 2.6–28.4°
c = 14.5966 (9) ŵ = 0.29 mm1
α = 90.138 (2)°T = 296 K
β = 95.835 (1)°Needle, light brown
γ = 115.755 (2)°0.28 × 0.18 × 0.14 mm
V = 701.94 (8) Å3
Bruker Kappa APEXII CCD diffractometer2491 independent reflections
Radiation source: fine-focus sealed tube2151 reflections with I > 2σ(I)
graphiteRint = 0.027
Detector resolution: 8.20 pixels mm-1θmax = 25.3°, θmin = 2.8°
ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −8→8
Tmin = 0.942, Tmax = 0.959l = −16→17
10105 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.17w = 1/[σ2(Fo2) + (0.0375P)2 + 0.8617P] where P = (Fo2 + 2Fc2)/3
2491 reflections(Δ/σ)max < 0.001
198 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.33027 (14)0.26260 (13)−0.24936 (5)0.0523 (3)
O10.3445 (3)0.2717 (4)0.01706 (15)0.0491 (8)
O20.4191 (3)0.2364 (4)0.25756 (15)0.0544 (8)
N10.1131 (3)0.2425 (3)0.14368 (15)0.0338 (7)
N20.0986 (4)0.2273 (4)0.23701 (15)0.0347 (7)
N30.2974 (4)0.0892 (5)0.53373 (18)0.0523 (10)
C1−0.0064 (4)0.2462 (4)−0.01053 (18)0.0311 (8)
C20.1854 (4)0.2739 (4)−0.04006 (19)0.0365 (9)
C30.2156 (5)0.3040 (5)−0.1323 (2)0.0505 (11)
C40.0595 (6)0.3026 (5)−0.1958 (2)0.0502 (11)
C5−0.1289 (5)0.2703 (4)−0.16794 (19)0.0391 (9)
C6−0.1630 (4)0.2451 (4)−0.07681 (19)0.0347 (8)
C7−0.0461 (4)0.2199 (4)0.08716 (18)0.0306 (8)
C8−0.2576 (5)0.1709 (6)0.1141 (2)0.0476 (10)
C90.2671 (4)0.2336 (4)0.28988 (19)0.0343 (9)
C100.2551 (4)0.2337 (4)0.39173 (18)0.0341 (9)
C110.2132 (4)0.3709 (5)0.4384 (2)0.0398 (9)
C120.2188 (5)0.3679 (5)0.5328 (2)0.0500 (11)
C130.2599 (5)0.2246 (6)0.5769 (2)0.0537 (13)
C140.2966 (5)0.0971 (5)0.4425 (2)0.0421 (10)
O30.7770 (3)0.2277 (4)0.34221 (16)0.0478 (8)
H10.314330.260590.070120.0736*
H2−0.011870.214460.260250.0416*
H30.343200.32529−0.151400.0608*
H40.081740.32343−0.257330.0605*
H6−0.290670.22721−0.059040.0416*
H8A−0.271450.291110.123620.0715*
H8B−0.275730.101180.170020.0715*
H8C−0.361580.088890.065880.0715*
H110.181800.463390.406440.0478*
H120.195380.460620.566160.0598*
H130.261610.222360.640640.0645*
H140.325500.005450.411250.0505*
H3A0.657 (6)0.217 (5)0.314 (3)0.0574*
H3B0.735 (6)0.139 (5)0.387 (3)0.0574*
U11U22U33U12U13U23
Cl10.0600 (5)0.0632 (5)0.0309 (4)0.0269 (4)−0.0066 (3)0.0055 (3)
O10.0391 (12)0.0743 (16)0.0436 (12)0.0329 (12)0.0093 (10)0.0112 (12)
O20.0426 (12)0.1011 (19)0.0355 (12)0.0456 (13)0.0069 (10)0.0129 (12)
N10.0346 (12)0.0435 (14)0.0252 (12)0.0192 (11)0.0011 (9)0.0024 (10)
N20.0313 (12)0.0509 (14)0.0248 (12)0.0209 (11)0.0026 (9)0.0032 (10)
N30.0568 (17)0.079 (2)0.0347 (14)0.0416 (16)0.0083 (12)0.0156 (14)
C10.0344 (14)0.0286 (14)0.0287 (14)0.0127 (12)0.0015 (11)0.0001 (11)
C20.0393 (16)0.0394 (16)0.0347 (15)0.0204 (13)0.0056 (12)0.0032 (12)
C30.0509 (19)0.069 (2)0.0438 (18)0.0342 (18)0.0205 (15)0.0110 (16)
C40.067 (2)0.063 (2)0.0297 (16)0.0352 (19)0.0135 (15)0.0081 (14)
C50.0493 (18)0.0391 (16)0.0281 (14)0.0199 (14)−0.0012 (12)0.0013 (12)
C60.0338 (14)0.0366 (15)0.0316 (15)0.0141 (12)0.0012 (11)0.0001 (12)
C70.0314 (14)0.0326 (14)0.0282 (14)0.0148 (12)0.0015 (11)0.0004 (11)
C80.0356 (16)0.079 (2)0.0296 (15)0.0264 (16)0.0031 (12)0.0055 (15)
C90.0307 (14)0.0450 (17)0.0301 (14)0.0197 (13)0.0014 (11)0.0039 (12)
C100.0270 (13)0.0469 (17)0.0267 (14)0.0153 (12)−0.0004 (11)0.0020 (12)
C110.0356 (15)0.0473 (17)0.0368 (16)0.0192 (14)0.0000 (12)0.0014 (13)
C120.0470 (18)0.068 (2)0.0382 (17)0.0284 (17)0.0032 (14)−0.0074 (16)
C130.053 (2)0.092 (3)0.0261 (16)0.041 (2)0.0038 (14)0.0042 (16)
C140.0458 (17)0.057 (2)0.0322 (16)0.0302 (16)0.0057 (13)0.0064 (14)
O30.0364 (12)0.0757 (17)0.0380 (12)0.0304 (12)0.0052 (9)0.0118 (11)
Cl1—C51.755 (4)C5—C61.376 (4)
O1—C21.349 (4)C7—C81.492 (5)
O2—C91.223 (4)C9—C101.498 (4)
O1—H10.8200C10—C111.385 (4)
O3—H3A0.89 (5)C10—C141.382 (4)
O3—H3B0.91 (4)C11—C121.375 (4)
N1—N21.378 (3)C12—C131.377 (5)
N1—C71.285 (4)C3—H30.9300
N2—C91.348 (4)C4—H40.9300
N3—C141.333 (4)C6—H60.9300
N3—C131.330 (5)C8—H8C0.9600
N2—H20.8600C8—H8A0.9600
C1—C71.479 (4)C8—H8B0.9600
C1—C61.403 (4)C11—H110.9300
C1—C21.412 (4)C12—H120.9300
C2—C31.389 (4)C13—H130.9300
C3—C41.375 (5)C14—H140.9300
C4—C51.370 (6)
C2—O1—H1109.00C9—C10—C14119.0 (3)
H3A—O3—H3B102 (4)C9—C10—C11122.9 (3)
N2—N1—C7120.6 (3)C10—C11—C12118.8 (3)
N1—N2—C9116.3 (3)C11—C12—C13118.5 (3)
C13—N3—C14116.9 (3)N3—C13—C12123.9 (3)
N1—N2—H2122.00N3—C14—C10123.7 (3)
C9—N2—H2122.00C2—C3—H3120.00
C2—C1—C6118.2 (2)C4—C3—H3120.00
C2—C1—C7122.3 (3)C5—C4—H4120.00
C6—C1—C7119.5 (3)C3—C4—H4120.00
C1—C2—C3119.6 (3)C1—C6—H6120.00
O1—C2—C3117.1 (3)C5—C6—H6120.00
O1—C2—C1123.3 (3)C7—C8—H8B109.00
C2—C3—C4120.9 (3)C7—C8—H8C109.00
C3—C4—C5119.7 (3)H8A—C8—H8B110.00
Cl1—C5—C6119.2 (3)H8A—C8—H8C109.00
Cl1—C5—C4119.7 (2)H8B—C8—H8C109.00
C4—C5—C6121.1 (3)C7—C8—H8A109.00
C1—C6—C5120.4 (3)C10—C11—H11121.00
N1—C7—C8124.7 (2)C12—C11—H11121.00
C1—C7—C8120.6 (3)C13—C12—H12121.00
N1—C7—C1114.7 (3)C11—C12—H12121.00
O2—C9—N2122.8 (3)N3—C13—H13118.00
O2—C9—C10121.7 (3)C12—C13—H13118.00
N2—C9—C10115.5 (3)N3—C14—H14118.00
C11—C10—C14118.1 (3)C10—C14—H14118.00
C7—N1—N2—C9173.6 (3)O1—C2—C3—C4178.1 (3)
N2—N1—C7—C1178.2 (2)C1—C2—C3—C4−1.5 (5)
N2—N1—C7—C8−1.8 (4)C2—C3—C4—C5−0.3 (5)
N1—N2—C9—O2−5.8 (4)C3—C4—C5—Cl1−178.5 (3)
N1—N2—C9—C10175.2 (2)C3—C4—C5—C62.0 (5)
C14—N3—C13—C120.8 (6)Cl1—C5—C6—C1178.6 (2)
C13—N3—C14—C10−1.4 (6)C4—C5—C6—C1−1.9 (4)
C6—C1—C2—O1−178.0 (3)O2—C9—C10—C11126.3 (3)
C6—C1—C2—C31.6 (4)O2—C9—C10—C14−50.7 (4)
C7—C1—C2—O12.4 (4)N2—C9—C10—C11−54.6 (4)
C7—C1—C2—C3−178.0 (3)N2—C9—C10—C14128.4 (3)
C2—C1—C6—C50.1 (4)C9—C10—C11—C12−175.7 (3)
C7—C1—C6—C5179.7 (3)C14—C10—C11—C121.3 (5)
C2—C1—C7—N16.1 (4)C9—C10—C14—N3177.6 (3)
C2—C1—C7—C8−173.9 (3)C11—C10—C14—N30.4 (5)
C6—C1—C7—N1−173.5 (2)C10—C11—C12—C13−1.9 (5)
C6—C1—C7—C86.6 (4)C11—C12—C13—N30.9 (6)
Cg2 is the centroid of the C1–C6 phenyl ring.
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.842.555 (3)144
N2—H2···O3i0.862.062.898 (4)166
O3—H3A···O20.89 (5)1.88 (5)2.760 (4)171 (3)
O3—H3B···N3ii0.91 (4)2.01 (4)2.885 (4)161 (4)
C8—H8A···Cg2iii0.962.993.763 (4)139
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C1–C6 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.842.555 (3)144
N2—H2⋯O3i0.862.062.898 (4)166
O3—H3A⋯O20.89 (5)1.88 (5)2.760 (4)171 (3)
O3—H3B⋯N3ii0.91 (4)2.01 (4)2.885 (4)161 (4)
C8—H8ACg2iii0.962.993.763 (4)139

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Zahid Shafiq; Muhammad Yaqub; M Nawaz Tahir; Abid Hussain; M Saeed Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

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4.  Structure validation in chemical crystallography.

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1.  N'-[(E)-(1-Methyl-1H-pyrrol-2-yl)methyl-idene]pyridine-4-carbohydrazide.

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