| Literature DB >> 21588074 |
Abid Hussain, Zahid Shafiq, M Nawaz Tahir, Muhammad Yaqub.
Abstract
In the title compound, C(14)H(12)ClN(3)O(2)·H(2)O, the benzene ring and the pyridine rings are oriented at a dihedral angle of 57.73 (12)° and an intra-molecular O-H⋯N hydrogen bond generates an S(6) ring. In the crystal, the water mol-ecule forms O-H⋯O and O-H⋯N hydrogen bonds to the organic mol-ecule, leading to chains containing R(4) (4)(16) loops. In addition, weak aromatic π-π stacking inter-actions between the centroids of pyridine rings [at distance of 3.864 (2) and 4.013 (2) Å] and C-H⋯π inter-actions occur.Entities:
Year: 2010 PMID: 21588074 PMCID: PMC3006986 DOI: 10.1107/S1600536810025213
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H12ClN3O2·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1770 reflections | |
| θ = 2.6–28.4° | |
| µ = 0.29 mm−1 | |
| α = 90.138 (2)° | |
| β = 95.835 (1)° | Needle, light brown |
| γ = 115.755 (2)° | 0.28 × 0.18 × 0.14 mm |
| Bruker Kappa APEXII CCD diffractometer | 2491 independent reflections |
| Radiation source: fine-focus sealed tube | 2151 reflections with |
| graphite | |
| Detector resolution: 8.20 pixels mm-1 | θmax = 25.3°, θmin = 2.8° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 10105 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2491 reflections | (Δ/σ)max < 0.001 |
| 198 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| Cl1 | −0.33027 (14) | 0.26260 (13) | −0.24936 (5) | 0.0523 (3) | |
| O1 | 0.3445 (3) | 0.2717 (4) | 0.01706 (15) | 0.0491 (8) | |
| O2 | 0.4191 (3) | 0.2364 (4) | 0.25756 (15) | 0.0544 (8) | |
| N1 | 0.1131 (3) | 0.2425 (3) | 0.14368 (15) | 0.0338 (7) | |
| N2 | 0.0986 (4) | 0.2273 (4) | 0.23701 (15) | 0.0347 (7) | |
| N3 | 0.2974 (4) | 0.0892 (5) | 0.53373 (18) | 0.0523 (10) | |
| C1 | −0.0064 (4) | 0.2462 (4) | −0.01053 (18) | 0.0311 (8) | |
| C2 | 0.1854 (4) | 0.2739 (4) | −0.04006 (19) | 0.0365 (9) | |
| C3 | 0.2156 (5) | 0.3040 (5) | −0.1323 (2) | 0.0505 (11) | |
| C4 | 0.0595 (6) | 0.3026 (5) | −0.1958 (2) | 0.0502 (11) | |
| C5 | −0.1289 (5) | 0.2703 (4) | −0.16794 (19) | 0.0391 (9) | |
| C6 | −0.1630 (4) | 0.2451 (4) | −0.07681 (19) | 0.0347 (8) | |
| C7 | −0.0461 (4) | 0.2199 (4) | 0.08716 (18) | 0.0306 (8) | |
| C8 | −0.2576 (5) | 0.1709 (6) | 0.1141 (2) | 0.0476 (10) | |
| C9 | 0.2671 (4) | 0.2336 (4) | 0.28988 (19) | 0.0343 (9) | |
| C10 | 0.2551 (4) | 0.2337 (4) | 0.39173 (18) | 0.0341 (9) | |
| C11 | 0.2132 (4) | 0.3709 (5) | 0.4384 (2) | 0.0398 (9) | |
| C12 | 0.2188 (5) | 0.3679 (5) | 0.5328 (2) | 0.0500 (11) | |
| C13 | 0.2599 (5) | 0.2246 (6) | 0.5769 (2) | 0.0537 (13) | |
| C14 | 0.2966 (5) | 0.0971 (5) | 0.4425 (2) | 0.0421 (10) | |
| O3 | 0.7770 (3) | 0.2277 (4) | 0.34221 (16) | 0.0478 (8) | |
| H1 | 0.31433 | 0.26059 | 0.07012 | 0.0736* | |
| H2 | −0.01187 | 0.21446 | 0.26025 | 0.0416* | |
| H3 | 0.34320 | 0.32529 | −0.15140 | 0.0608* | |
| H4 | 0.08174 | 0.32343 | −0.25733 | 0.0605* | |
| H6 | −0.29067 | 0.22721 | −0.05904 | 0.0416* | |
| H8A | −0.27145 | 0.29111 | 0.12362 | 0.0715* | |
| H8B | −0.27573 | 0.10118 | 0.17002 | 0.0715* | |
| H8C | −0.36158 | 0.08889 | 0.06588 | 0.0715* | |
| H11 | 0.18180 | 0.46339 | 0.40644 | 0.0478* | |
| H12 | 0.19538 | 0.46062 | 0.56616 | 0.0598* | |
| H13 | 0.26161 | 0.22236 | 0.64064 | 0.0645* | |
| H14 | 0.32550 | 0.00545 | 0.41125 | 0.0505* | |
| H3A | 0.657 (6) | 0.217 (5) | 0.314 (3) | 0.0574* | |
| H3B | 0.735 (6) | 0.139 (5) | 0.387 (3) | 0.0574* |
| Cl1 | 0.0600 (5) | 0.0632 (5) | 0.0309 (4) | 0.0269 (4) | −0.0066 (3) | 0.0055 (3) |
| O1 | 0.0391 (12) | 0.0743 (16) | 0.0436 (12) | 0.0329 (12) | 0.0093 (10) | 0.0112 (12) |
| O2 | 0.0426 (12) | 0.1011 (19) | 0.0355 (12) | 0.0456 (13) | 0.0069 (10) | 0.0129 (12) |
| N1 | 0.0346 (12) | 0.0435 (14) | 0.0252 (12) | 0.0192 (11) | 0.0011 (9) | 0.0024 (10) |
| N2 | 0.0313 (12) | 0.0509 (14) | 0.0248 (12) | 0.0209 (11) | 0.0026 (9) | 0.0032 (10) |
| N3 | 0.0568 (17) | 0.079 (2) | 0.0347 (14) | 0.0416 (16) | 0.0083 (12) | 0.0156 (14) |
| C1 | 0.0344 (14) | 0.0286 (14) | 0.0287 (14) | 0.0127 (12) | 0.0015 (11) | 0.0001 (11) |
| C2 | 0.0393 (16) | 0.0394 (16) | 0.0347 (15) | 0.0204 (13) | 0.0056 (12) | 0.0032 (12) |
| C3 | 0.0509 (19) | 0.069 (2) | 0.0438 (18) | 0.0342 (18) | 0.0205 (15) | 0.0110 (16) |
| C4 | 0.067 (2) | 0.063 (2) | 0.0297 (16) | 0.0352 (19) | 0.0135 (15) | 0.0081 (14) |
| C5 | 0.0493 (18) | 0.0391 (16) | 0.0281 (14) | 0.0199 (14) | −0.0012 (12) | 0.0013 (12) |
| C6 | 0.0338 (14) | 0.0366 (15) | 0.0316 (15) | 0.0141 (12) | 0.0012 (11) | 0.0001 (12) |
| C7 | 0.0314 (14) | 0.0326 (14) | 0.0282 (14) | 0.0148 (12) | 0.0015 (11) | 0.0004 (11) |
| C8 | 0.0356 (16) | 0.079 (2) | 0.0296 (15) | 0.0264 (16) | 0.0031 (12) | 0.0055 (15) |
| C9 | 0.0307 (14) | 0.0450 (17) | 0.0301 (14) | 0.0197 (13) | 0.0014 (11) | 0.0039 (12) |
| C10 | 0.0270 (13) | 0.0469 (17) | 0.0267 (14) | 0.0153 (12) | −0.0004 (11) | 0.0020 (12) |
| C11 | 0.0356 (15) | 0.0473 (17) | 0.0368 (16) | 0.0192 (14) | 0.0000 (12) | 0.0014 (13) |
| C12 | 0.0470 (18) | 0.068 (2) | 0.0382 (17) | 0.0284 (17) | 0.0032 (14) | −0.0074 (16) |
| C13 | 0.053 (2) | 0.092 (3) | 0.0261 (16) | 0.041 (2) | 0.0038 (14) | 0.0042 (16) |
| C14 | 0.0458 (17) | 0.057 (2) | 0.0322 (16) | 0.0302 (16) | 0.0057 (13) | 0.0064 (14) |
| O3 | 0.0364 (12) | 0.0757 (17) | 0.0380 (12) | 0.0304 (12) | 0.0052 (9) | 0.0118 (11) |
| Cl1—C5 | 1.755 (4) | C5—C6 | 1.376 (4) |
| O1—C2 | 1.349 (4) | C7—C8 | 1.492 (5) |
| O2—C9 | 1.223 (4) | C9—C10 | 1.498 (4) |
| O1—H1 | 0.8200 | C10—C11 | 1.385 (4) |
| O3—H3A | 0.89 (5) | C10—C14 | 1.382 (4) |
| O3—H3B | 0.91 (4) | C11—C12 | 1.375 (4) |
| N1—N2 | 1.378 (3) | C12—C13 | 1.377 (5) |
| N1—C7 | 1.285 (4) | C3—H3 | 0.9300 |
| N2—C9 | 1.348 (4) | C4—H4 | 0.9300 |
| N3—C14 | 1.333 (4) | C6—H6 | 0.9300 |
| N3—C13 | 1.330 (5) | C8—H8C | 0.9600 |
| N2—H2 | 0.8600 | C8—H8A | 0.9600 |
| C1—C7 | 1.479 (4) | C8—H8B | 0.9600 |
| C1—C6 | 1.403 (4) | C11—H11 | 0.9300 |
| C1—C2 | 1.412 (4) | C12—H12 | 0.9300 |
| C2—C3 | 1.389 (4) | C13—H13 | 0.9300 |
| C3—C4 | 1.375 (5) | C14—H14 | 0.9300 |
| C4—C5 | 1.370 (6) | ||
| C2—O1—H1 | 109.00 | C9—C10—C14 | 119.0 (3) |
| H3A—O3—H3B | 102 (4) | C9—C10—C11 | 122.9 (3) |
| N2—N1—C7 | 120.6 (3) | C10—C11—C12 | 118.8 (3) |
| N1—N2—C9 | 116.3 (3) | C11—C12—C13 | 118.5 (3) |
| C13—N3—C14 | 116.9 (3) | N3—C13—C12 | 123.9 (3) |
| N1—N2—H2 | 122.00 | N3—C14—C10 | 123.7 (3) |
| C9—N2—H2 | 122.00 | C2—C3—H3 | 120.00 |
| C2—C1—C6 | 118.2 (2) | C4—C3—H3 | 120.00 |
| C2—C1—C7 | 122.3 (3) | C5—C4—H4 | 120.00 |
| C6—C1—C7 | 119.5 (3) | C3—C4—H4 | 120.00 |
| C1—C2—C3 | 119.6 (3) | C1—C6—H6 | 120.00 |
| O1—C2—C3 | 117.1 (3) | C5—C6—H6 | 120.00 |
| O1—C2—C1 | 123.3 (3) | C7—C8—H8B | 109.00 |
| C2—C3—C4 | 120.9 (3) | C7—C8—H8C | 109.00 |
| C3—C4—C5 | 119.7 (3) | H8A—C8—H8B | 110.00 |
| Cl1—C5—C6 | 119.2 (3) | H8A—C8—H8C | 109.00 |
| Cl1—C5—C4 | 119.7 (2) | H8B—C8—H8C | 109.00 |
| C4—C5—C6 | 121.1 (3) | C7—C8—H8A | 109.00 |
| C1—C6—C5 | 120.4 (3) | C10—C11—H11 | 121.00 |
| N1—C7—C8 | 124.7 (2) | C12—C11—H11 | 121.00 |
| C1—C7—C8 | 120.6 (3) | C13—C12—H12 | 121.00 |
| N1—C7—C1 | 114.7 (3) | C11—C12—H12 | 121.00 |
| O2—C9—N2 | 122.8 (3) | N3—C13—H13 | 118.00 |
| O2—C9—C10 | 121.7 (3) | C12—C13—H13 | 118.00 |
| N2—C9—C10 | 115.5 (3) | N3—C14—H14 | 118.00 |
| C11—C10—C14 | 118.1 (3) | C10—C14—H14 | 118.00 |
| C7—N1—N2—C9 | 173.6 (3) | O1—C2—C3—C4 | 178.1 (3) |
| N2—N1—C7—C1 | 178.2 (2) | C1—C2—C3—C4 | −1.5 (5) |
| N2—N1—C7—C8 | −1.8 (4) | C2—C3—C4—C5 | −0.3 (5) |
| N1—N2—C9—O2 | −5.8 (4) | C3—C4—C5—Cl1 | −178.5 (3) |
| N1—N2—C9—C10 | 175.2 (2) | C3—C4—C5—C6 | 2.0 (5) |
| C14—N3—C13—C12 | 0.8 (6) | Cl1—C5—C6—C1 | 178.6 (2) |
| C13—N3—C14—C10 | −1.4 (6) | C4—C5—C6—C1 | −1.9 (4) |
| C6—C1—C2—O1 | −178.0 (3) | O2—C9—C10—C11 | 126.3 (3) |
| C6—C1—C2—C3 | 1.6 (4) | O2—C9—C10—C14 | −50.7 (4) |
| C7—C1—C2—O1 | 2.4 (4) | N2—C9—C10—C11 | −54.6 (4) |
| C7—C1—C2—C3 | −178.0 (3) | N2—C9—C10—C14 | 128.4 (3) |
| C2—C1—C6—C5 | 0.1 (4) | C9—C10—C11—C12 | −175.7 (3) |
| C7—C1—C6—C5 | 179.7 (3) | C14—C10—C11—C12 | 1.3 (5) |
| C2—C1—C7—N1 | 6.1 (4) | C9—C10—C14—N3 | 177.6 (3) |
| C2—C1—C7—C8 | −173.9 (3) | C11—C10—C14—N3 | 0.4 (5) |
| C6—C1—C7—N1 | −173.5 (2) | C10—C11—C12—C13 | −1.9 (5) |
| C6—C1—C7—C8 | 6.6 (4) | C11—C12—C13—N3 | 0.9 (6) |
| Cg2 is the centroid of the C1–C6 phenyl ring. |
| H··· | ||||
| O1—H1···N1 | 0.82 | 1.84 | 2.555 (3) | 144 |
| N2—H2···O3i | 0.86 | 2.06 | 2.898 (4) | 166 |
| O3—H3A···O2 | 0.89 (5) | 1.88 (5) | 2.760 (4) | 171 (3) |
| O3—H3B···N3ii | 0.91 (4) | 2.01 (4) | 2.885 (4) | 161 (4) |
| C8—H8A···Cg2iii | 0.96 | 2.99 | 3.763 (4) | 139 |
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C1–C6 phenyl ring.
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N1 | 0.82 | 1.84 | 2.555 (3) | 144 |
| N2—H2⋯O3i | 0.86 | 2.06 | 2.898 (4) | 166 |
| O3—H3 | 0.89 (5) | 1.88 (5) | 2.760 (4) | 171 (3) |
| O3—H3 | 0.91 (4) | 2.01 (4) | 2.885 (4) | 161 (4) |
| C8—H8 | 0.96 | 2.99 | 3.763 (4) | 139 |
Symmetry codes: (i) ; (ii) ; (iii) .