Literature DB >> 21202640

2-Amino-4-methyl-pyridinium 4-amino-benzoate.

Hong Shen1, Jing-Jing Nie, Duan-Jun Xu.   

Abstract

In the structure of the title salt, C(6)H(9)N(2) (+)·C(7)H(6)NO(2) (-), the 4-amino-benzoate anions are linked to adjacent anions and 2-amino-4-methyl-pyridinium cations via N-H⋯O hydrogen bonds, forming a three-dimensional supra-molecular structure. The crystal structure also shows a weak C-H⋯O hydrogen bond between adjacent anions. Within the 4-amino-benzoate anion, the carboxyl-ate group is twisted by 14.0 (4)° with respect to the benz-ene ring.

Entities:  

Year:  2008        PMID: 21202640      PMCID: PMC2961432          DOI: 10.1107/S1600536808014839

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Choudhury et al. (2007 ▶); Halvorson et al. (1987 ▶); Geiser et al. (1986 ▶); Geiser & Willett (1984 ▶). For related structures, see: Kaabi & Khedhiri (2004 ▶); Chtioui et al. (2006 ▶). For a description of the Cambridge Structural Database, see Allen (2002 ▶).

Experimental

Crystal data

C6H9N2C7H6NO2 M = 245.28 Orthorhombic, a = 5.5734 (14) Å b = 8.8154 (16) Å c = 25.374 (5) Å V = 1246.6 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 295 (2) K 0.46 × 0.38 × 0.30 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: none 14099 measured reflections 1451 independent reflections 1126 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.095 S = 1.04 1451 reflections 165 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.12 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808014839/ng2457sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014839/ng2457Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H6NO2F000 = 520
Mr = 245.28Dx = 1.307 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2654 reflections
a = 5.5734 (14) Åθ = 2.0–25.2º
b = 8.8154 (16) ŵ = 0.09 mm1
c = 25.374 (5) ÅT = 295 (2) K
V = 1246.6 (5) Å3Chunk, light brown
Z = 40.46 × 0.38 × 0.30 mm
Rigaku R-AXIS RAPID IP diffractometer1451 independent reflections
Radiation source: fine-focus sealed tube1126 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.059
Detector resolution: 10.00 pixels mm-1θmax = 26.0º
T = 295(2) Kθmin = 1.6º
ω scansh = −6→6
Absorption correction: nonek = −10→10
14099 measured reflectionsl = −30→29
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.037  w = 1/[σ2(Fo2) + (0.0449P)2 + 0.1505P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.095(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.13 e Å3
1451 reflectionsΔρmin = −0.12 e Å3
165 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.015 (3)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.5107 (5)0.2323 (3)0.74214 (9)0.0710 (7)
H1A−0.44590.19470.77120.106*
H1B−0.63620.19810.72670.106*
N20.5736 (4)0.8834 (2)0.61196 (7)0.0520 (6)
H2N0.45480.82310.62560.078*
N30.4308 (5)0.8308 (3)0.52906 (8)0.0660 (7)
H3A0.44430.85280.49340.099*
H3B0.30980.77660.54540.099*
O10.0737 (4)0.6432 (2)0.57815 (6)0.0692 (6)
O20.2584 (3)0.6999 (2)0.65310 (6)0.0562 (5)
C1−0.0644 (4)0.5269 (3)0.65687 (9)0.0451 (6)
C2−0.0117 (4)0.4843 (3)0.70832 (9)0.0497 (6)
H20.12490.52330.72440.060*
C3−0.1565 (5)0.3857 (3)0.73617 (9)0.0523 (7)
H3−0.11390.35680.77020.063*
C4−0.3654 (5)0.3295 (3)0.71361 (9)0.0488 (6)
C5−0.4210 (5)0.3741 (3)0.66250 (10)0.0581 (7)
H5−0.56120.33880.64680.070*
C6−0.2727 (5)0.4694 (3)0.63474 (10)0.0550 (7)
H6−0.31290.49600.60040.066*
C70.0980 (5)0.6303 (3)0.62688 (9)0.0479 (6)
C80.5886 (5)0.9037 (3)0.55940 (9)0.0482 (6)
C90.7670 (5)1.0014 (3)0.53990 (10)0.0520 (6)
H90.78151.01560.50370.062*
C100.9189 (5)1.0757 (3)0.57306 (10)0.0551 (7)
C110.8960 (6)1.0501 (3)0.62760 (11)0.0668 (8)
H110.99771.09890.65120.080*
C120.7262 (6)0.9547 (3)0.64526 (10)0.0636 (8)
H120.71310.93720.68130.076*
C131.1031 (6)1.1849 (3)0.55251 (12)0.0742 (8)
H13A1.11231.17660.51480.111*
H13B1.25671.16150.56760.111*
H13C1.05821.28650.56190.111*
U11U22U33U12U13U23
N10.0621 (14)0.0843 (17)0.0664 (14)−0.0162 (14)−0.0039 (12)0.0169 (13)
N20.0637 (14)0.0562 (12)0.0360 (11)0.0004 (12)0.0035 (11)0.0007 (9)
N30.0751 (15)0.0825 (16)0.0403 (11)−0.0200 (16)0.0037 (12)−0.0003 (11)
O10.0800 (14)0.0940 (14)0.0336 (9)−0.0151 (13)−0.0001 (10)0.0088 (9)
O20.0660 (11)0.0651 (10)0.0374 (9)−0.0093 (11)0.0020 (10)0.0024 (8)
C10.0495 (14)0.0509 (13)0.0350 (12)0.0068 (13)0.0035 (12)0.0009 (10)
C20.0508 (14)0.0590 (14)0.0391 (13)−0.0028 (13)−0.0028 (11)0.0011 (12)
C30.0537 (16)0.0673 (16)0.0360 (12)−0.0002 (14)−0.0013 (11)0.0086 (13)
C40.0489 (15)0.0536 (14)0.0440 (14)0.0021 (13)0.0023 (12)0.0017 (12)
C50.0525 (15)0.0734 (18)0.0484 (15)−0.0043 (16)−0.0046 (14)−0.0018 (13)
C60.0599 (17)0.0668 (17)0.0383 (14)0.0070 (16)−0.0040 (13)0.0035 (12)
C70.0559 (16)0.0525 (14)0.0354 (13)0.0065 (14)0.0036 (12)0.0021 (11)
C80.0554 (15)0.0498 (13)0.0395 (13)0.0042 (14)0.0032 (12)0.0006 (11)
C90.0635 (16)0.0517 (13)0.0409 (13)0.0048 (15)0.0058 (13)0.0019 (11)
C100.0574 (16)0.0479 (14)0.0598 (16)0.0027 (14)0.0011 (15)0.0004 (12)
C110.076 (2)0.0692 (18)0.0554 (17)−0.0099 (18)−0.0100 (16)−0.0047 (14)
C120.082 (2)0.0698 (18)0.0387 (14)0.0010 (19)−0.0040 (15)−0.0012 (13)
C130.0708 (19)0.0678 (18)0.084 (2)−0.0106 (19)0.0038 (18)−0.0001 (16)
N1—C41.384 (3)C3—H30.9300
N1—H1A0.8846C4—C51.390 (3)
N1—H1B0.8568C5—C61.373 (4)
N2—C81.348 (3)C5—H50.9300
N2—C121.354 (3)C6—H60.9300
N2—H2N0.9167C8—C91.405 (4)
N3—C81.334 (3)C9—C101.361 (4)
N3—H3A0.9287C9—H90.9300
N3—H3B0.9252C10—C111.408 (4)
O1—C71.249 (3)C10—C131.501 (4)
O2—C71.272 (3)C11—C121.343 (4)
C1—C61.385 (4)C11—H110.9300
C1—C21.390 (3)C12—H120.9300
C1—C71.494 (3)C13—H13A0.9600
C2—C31.381 (3)C13—H13B0.9600
C2—H20.9300C13—H13C0.9600
C3—C41.389 (3)
C4—N1—H1A115.4C1—C6—H6119.3
C4—N1—H1B117.1O1—C7—O2123.4 (2)
H1A—N1—H1B125.7O1—C7—C1119.6 (2)
C8—N2—C12121.1 (2)O2—C7—C1117.0 (2)
C8—N2—H2N119.7N3—C8—N2117.8 (2)
C12—N2—H2N119.2N3—C8—C9124.0 (2)
C8—N3—H3A114.1N2—C8—C9118.3 (2)
C8—N3—H3B118.1C10—C9—C8121.1 (2)
H3A—N3—H3B127.2C10—C9—H9119.4
C6—C1—C2117.3 (2)C8—C9—H9119.4
C6—C1—C7121.7 (2)C9—C10—C11118.3 (3)
C2—C1—C7121.0 (2)C9—C10—C13121.3 (2)
C3—C2—C1121.8 (2)C11—C10—C13120.4 (3)
C3—C2—H2119.1C12—C11—C10119.5 (3)
C1—C2—H2119.1C12—C11—H11120.3
C2—C3—C4120.2 (2)C10—C11—H11120.3
C2—C3—H3119.9C11—C12—N2121.7 (2)
C4—C3—H3119.9C11—C12—H12119.1
N1—C4—C3119.7 (2)N2—C12—H12119.1
N1—C4—C5122.2 (2)C10—C13—H13A109.5
C3—C4—C5118.1 (2)C10—C13—H13B109.5
C6—C5—C4121.1 (3)H13A—C13—H13B109.5
C6—C5—H5119.4C10—C13—H13C109.5
C4—C5—H5119.4H13A—C13—H13C109.5
C5—C6—C1121.4 (2)H13B—C13—H13C109.5
C5—C6—H6119.3
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.892.193.021 (3)157
N2—H2N···O20.921.692.606 (3)174
N3—H3A···O1ii0.931.952.844 (3)160
N3—H3B···O10.921.952.872 (3)174
C3—H3···O2i0.932.523.301 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.892.193.021 (3)157
N2—H2N⋯O20.921.692.606 (3)174
N3—H3A⋯O1ii0.931.952.844 (3)160
N3—H3B⋯O10.921.952.872 (3)174
C3—H3⋯O2i0.932.523.301 (3)142

Symmetry codes: (i) ; (ii) .

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