Literature DB >> 21579764

2-Amino-4-methyl-pyridinium 4-nitro-benzoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(6)H(9)N(2) (+)·C(7)H(4)NO(4) (-), the nitro group of the 4-nitro-benzoate anion is twisted by 7.66 (10)° from the attached ring. In the crystal structure, the 2-amino-4-methyl-pyridinium cations and 4-nitro-benzoate anions are linked via a pair of N-H⋯O hydrogen bonds to form a ribbon-like structure along the c axis. The ribbons are crosslinked into a three-dimensional framework by C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579764      PMCID: PMC2979821          DOI: 10.1107/S1600536810000693

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶). For bond-length data, see: Allen et al. (1987 ▶). For details of hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2 +·C7H4NO4 M = 275.26 Monoclinic, a = 10.5267 (2) Å b = 5.0187 (1) Å c = 12.2436 (3) Å β = 92.194 (1)° V = 646.36 (2) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.49 × 0.28 × 0.16 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.949, T max = 0.983 10644 measured reflections 2841 independent reflections 2390 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.124 S = 1.03 2841 reflections 222 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810000693/ci5013sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000693/ci5013Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H4NO4F(000) = 288
Mr = 275.26Dx = 1.414 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2ycCell parameters from 3965 reflections
a = 10.5267 (2) Åθ = 3.3–34.8°
b = 5.0187 (1) ŵ = 0.11 mm1
c = 12.2436 (3) ÅT = 100 K
β = 92.194 (1)°Block, colourless
V = 646.36 (2) Å30.49 × 0.28 × 0.16 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer2841 independent reflections
Radiation source: fine-focus sealed tube2390 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 35.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −16→16
Tmin = 0.949, Tmax = 0.983k = −8→8
10644 measured reflectionsl = −19→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0808P)2] where P = (Fo2 + 2Fc2)/3
2841 reflections(Δ/σ)max = 0.001
222 parametersΔρmax = 0.44 e Å3
2 restraintsΔρmin = −0.30 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) k.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.80158 (13)0.6741 (3)−0.02376 (11)0.0242 (3)
O20.71718 (12)0.7465 (3)0.13779 (10)0.0199 (2)
O31.22450 (16)−0.2278 (4)0.19930 (13)0.0424 (5)
O41.13745 (12)−0.1978 (3)0.35531 (10)0.0223 (3)
N11.14461 (14)−0.1369 (3)0.25872 (13)0.0198 (3)
C10.79450 (13)0.6328 (3)0.07603 (12)0.0153 (3)
C20.88627 (14)0.4321 (3)0.12679 (12)0.0148 (3)
C30.96760 (16)0.2969 (4)0.05869 (14)0.0207 (3)
C41.05331 (17)0.1098 (4)0.10127 (14)0.0222 (3)
C51.05432 (15)0.0620 (3)0.21297 (13)0.0171 (3)
C60.97482 (15)0.1920 (3)0.28289 (13)0.0162 (3)
C70.88970 (14)0.3788 (4)0.23830 (13)0.0160 (3)
N20.57997 (13)0.1076 (3)1.02192 (11)0.0178 (3)
N30.67843 (14)0.0756 (3)0.85722 (12)0.0210 (3)
C80.49010 (17)0.2097 (4)1.08697 (15)0.0214 (3)
C90.40877 (17)0.4041 (4)1.05116 (16)0.0240 (3)
C100.41950 (16)0.5031 (3)0.94309 (15)0.0207 (3)
C110.51011 (15)0.3970 (3)0.87848 (14)0.0193 (3)
C120.59201 (15)0.1925 (3)0.91783 (14)0.0169 (3)
C130.33051 (18)0.7156 (4)0.90181 (19)0.0259 (4)
H13A0.35740.77910.83240.039*
H13B0.33080.86050.95300.039*
H13C0.24620.64390.89340.039*
H3A0.969 (2)0.351 (5)−0.017 (2)0.023 (6)*
H4A1.110 (2)0.010 (5)0.055 (2)0.020 (6)*
H6A0.977 (2)0.176 (5)0.364 (2)0.025 (6)*
H7A0.833 (2)0.476 (6)0.289 (2)0.028 (7)*
H8A0.479 (3)0.152 (6)1.160 (3)0.045 (9)*
H9A0.347 (3)0.490 (6)1.095 (2)0.036 (7)*
H11A0.519 (3)0.464 (6)0.804 (2)0.029 (6)*
H1N20.631 (3)−0.026 (7)1.052 (3)0.043 (8)*
H1N30.690 (3)0.148 (8)0.796 (3)0.054 (10)*
H2N30.726 (3)−0.058 (7)0.894 (3)0.046 (8)*
U11U22U33U12U13U23
O10.0315 (7)0.0287 (7)0.0127 (5)0.0121 (5)0.0045 (5)0.0033 (5)
O20.0231 (5)0.0239 (6)0.0131 (5)0.0076 (5)0.0048 (4)0.0012 (4)
O30.0476 (10)0.0597 (11)0.0206 (7)0.0367 (9)0.0094 (7)0.0023 (7)
O40.0258 (6)0.0253 (7)0.0161 (6)0.0035 (5)0.0024 (5)0.0043 (5)
N10.0226 (6)0.0214 (7)0.0153 (6)0.0055 (5)0.0007 (5)−0.0001 (5)
C10.0173 (6)0.0164 (7)0.0122 (7)0.0004 (5)0.0014 (5)−0.0015 (5)
C20.0175 (6)0.0162 (7)0.0109 (6)0.0009 (5)0.0021 (5)−0.0010 (5)
C30.0248 (8)0.0263 (9)0.0110 (7)0.0063 (6)0.0034 (6)0.0006 (6)
C40.0254 (8)0.0276 (9)0.0139 (7)0.0094 (7)0.0054 (6)−0.0019 (6)
C50.0172 (6)0.0198 (8)0.0143 (7)0.0027 (5)0.0009 (5)−0.0005 (6)
C60.0177 (6)0.0189 (8)0.0121 (7)0.0017 (5)0.0023 (5)0.0017 (5)
C70.0175 (6)0.0191 (8)0.0116 (6)0.0032 (5)0.0028 (5)−0.0006 (5)
N20.0195 (6)0.0195 (7)0.0145 (6)0.0048 (5)0.0031 (5)−0.0001 (5)
N30.0241 (7)0.0228 (7)0.0165 (6)0.0065 (5)0.0062 (5)0.0045 (5)
C80.0245 (7)0.0245 (8)0.0155 (7)0.0047 (6)0.0045 (6)−0.0026 (6)
C90.0229 (7)0.0255 (9)0.0238 (8)0.0068 (6)0.0050 (6)−0.0045 (6)
C100.0194 (6)0.0161 (7)0.0263 (8)0.0015 (5)−0.0019 (6)−0.0017 (6)
C110.0222 (7)0.0160 (7)0.0195 (7)0.0018 (5)−0.0006 (6)0.0019 (5)
C120.0182 (6)0.0167 (7)0.0159 (7)0.0009 (5)0.0016 (5)0.0010 (6)
C130.0237 (8)0.0199 (8)0.0336 (10)0.0050 (6)−0.0043 (7)−0.0012 (7)
O1—C11.244 (2)N2—C81.360 (2)
O2—C11.2675 (19)N2—H1N20.93 (3)
O3—N11.221 (2)N3—C121.332 (2)
O4—N11.227 (2)N3—H1N30.85 (4)
N1—C51.474 (2)N3—H2N30.94 (3)
C1—C21.513 (2)C8—C91.359 (3)
C2—C71.390 (2)C8—H8A0.95 (3)
C2—C31.394 (2)C9—C101.422 (3)
C3—C41.390 (3)C9—H9A0.96 (3)
C3—H3A0.96 (3)C10—C111.370 (2)
C4—C51.388 (2)C10—C131.495 (3)
C4—H4A0.98 (2)C11—C121.413 (2)
C5—C61.383 (2)C11—H11A0.98 (3)
C6—C71.394 (2)C13—H13A0.96
C6—H6A0.99 (3)C13—H13B0.96
C7—H7A1.00 (3)C13—H13C0.96
N2—C121.354 (2)
O3—N1—O4123.39 (16)C8—N2—H1N2116.1 (19)
O3—N1—C5118.38 (16)C12—N3—H1N3116 (2)
O4—N1—C5118.21 (14)C12—N3—H2N3114.0 (19)
O1—C1—O2125.08 (16)H1N3—N3—H2N3130 (3)
O1—C1—C2116.94 (13)C9—C8—N2121.68 (17)
O2—C1—C2117.98 (14)C9—C8—H8A115.0 (19)
C7—C2—C3120.02 (15)N2—C8—H8A123.4 (19)
C7—C2—C1121.57 (13)C8—C9—C10118.65 (15)
C3—C2—C1118.40 (14)C8—C9—H9A125.2 (17)
C4—C3—C2120.61 (16)C10—C9—H9A116.0 (18)
C4—C3—H3A121.0 (14)C11—C10—C9118.90 (15)
C2—C3—H3A118.0 (14)C11—C10—C13121.55 (17)
C5—C4—C3117.84 (15)C9—C10—C13119.53 (17)
C5—C4—H4A120.0 (14)C10—C11—C12120.97 (16)
C3—C4—H4A122.1 (14)C10—C11—H11A119.6 (16)
C6—C5—C4123.09 (15)C12—C11—H11A119.4 (16)
C6—C5—N1118.73 (15)N3—C12—N2118.43 (15)
C4—C5—N1118.17 (15)N3—C12—C11123.42 (16)
C5—C6—C7118.03 (15)N2—C12—C11118.13 (15)
C5—C6—H6A126.2 (14)C10—C13—H13A109.5
C7—C6—H6A115.6 (14)C10—C13—H13B109.5
C2—C7—C6120.40 (14)H13A—C13—H13B109.5
C2—C7—H7A121.4 (16)C10—C13—H13C109.5
C6—C7—H7A118.2 (16)H13A—C13—H13C109.5
C12—N2—C8121.65 (14)H13B—C13—H13C109.5
C12—N2—H1N2122.2 (19)
O1—C1—C2—C7177.48 (16)N1—C5—C6—C7−179.78 (15)
O2—C1—C2—C7−2.2 (2)C3—C2—C7—C60.5 (2)
O1—C1—C2—C3−3.3 (2)C1—C2—C7—C6179.72 (15)
O2—C1—C2—C3177.03 (16)C5—C6—C7—C2−0.4 (2)
C7—C2—C3—C4−0.5 (3)C12—N2—C8—C9−0.7 (3)
C1—C2—C3—C4−179.77 (17)N2—C8—C9—C10−0.5 (3)
C2—C3—C4—C50.4 (3)C8—C9—C10—C110.8 (3)
C3—C4—C5—C6−0.3 (3)C8—C9—C10—C13179.63 (18)
C3—C4—C5—N1179.75 (17)C9—C10—C11—C120.0 (2)
O3—N1—C5—C6−171.50 (18)C13—C10—C11—C12−178.76 (16)
O4—N1—C5—C66.8 (2)C8—N2—C12—N3−177.11 (16)
O3—N1—C5—C48.5 (3)C8—N2—C12—C111.5 (2)
O4—N1—C5—C4−173.20 (17)C10—C11—C12—N3177.40 (17)
C4—C5—C6—C70.2 (3)C10—C11—C12—N2−1.2 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.93 (3)2.55 (3)3.254 (2)134 (3)
N2—H1N2···O2i0.93 (3)1.78 (3)2.688 (2)167 (3)
N3—H1N3···O2ii0.85 (4)2.04 (4)2.875 (2)170 (4)
N3—H2N3···O1i0.94 (3)1.84 (3)2.778 (2)173 (3)
C3—H3A···O4iii0.97 (2)2.53 (2)3.160 (2)123 (2)
C6—H6A···O1ii1.00 (2)2.46 (2)3.116 (2)123 (3)
C7—H7A···O1ii1.00 (3)2.45 (3)3.102 (2)122 (2)
C9—H9A···O3iv0.96 (3)2.33 (3)3.276 (3)168 (3)
C13—H13C···O4v0.962.553.335 (2)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.93 (3)2.55 (3)3.254 (2)134 (3)
N2—H1N2⋯O2i0.93 (3)1.78 (3)2.688 (2)167 (3)
N3—H1N3⋯O2ii0.85 (4)2.04 (4)2.875 (2)170 (4)
N3—H2N3⋯O1i0.94 (3)1.84 (3)2.778 (2)173 (3)
C3—H3A⋯O4iii0.97 (2)2.53 (2)3.160 (2)123 (2)
C6—H6A⋯O1ii1.00 (2)2.46 (2)3.116 (2)123 (3)
C7—H7A⋯O1ii1.00 (3)2.45 (3)3.102 (2)122 (2)
C9—H9A⋯O3iv0.96 (3)2.33 (3)3.276 (3)168 (3)
C13—H13C⋯O4v0.962.553.335 (2)139

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  2-Amino-4-methyl-pyridinium trifluoro-acetate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-10

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