Literature DB >> 21587829

Ethyl 1-(2-hy-droxy-eth-yl)-2-p-tolyl-1H-benzimidazole-5-carboxyl-ate.

Natarajan Arumugam, Aisyah Saad Abdul Rahim, Habibah A Wahab, Jia Hao Goh, Hoong-Kun Fun.   

Abstract

The asymmetric unit of the title compound, C(19)H(20)N(2)O(3), contains two mol-ecules (A and B) with slightly different orientations of the ethyl groups with respect to the attached carboxyl-ate groups. Intra-molecular C-H⋯O hydrogen bonds generate S(8) ring motifs in both mol-ecules A and B. In each mol-ecule, the benzimidazole ring system is essentially planar, with maximum deviations of 0.023 (1) and 0.020 (1) Å, respectively, for mol-ecules A and B. The dihedral angle between the benzimidazole ring system and the phenyl ring is 37.34 (5)° for mol-ecule A and 42.42 (5)° for mol-ecule B. In the crystal, O-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules into [100] columns with a cross-section of two-mol-ecule by two-mol-ecule wide, and further stabilization is provided by weak C-H⋯π and π-π inter-actions [centroid separations = 3.5207 (7) and 3.6314 (8) Å].

Entities:  

Year:  2010        PMID: 21587829      PMCID: PMC3006903          DOI: 10.1107/S1600536810020799

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of benzimidazole derivatives, see: Denny et al. (1990 ▶); Evans et al. (1997 ▶); Grassmann et al. (2002 ▶); Göker et al. (2002 ▶); Seth et al. (2003 ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For closely related benzimidazole structures, see: Arumugam et al. (2010 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C19H20N2O3 M = 324.37 Triclinic, a = 9.0400 (9) Å b = 12.6806 (13) Å c = 15.5504 (17) Å α = 74.170 (2)° β = 74.360 (2)° γ = 76.721 (2)° V = 1627.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.41 × 0.32 × 0.23 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.964, T max = 0.980 30776 measured reflections 10646 independent reflections 8773 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.194 S = 1.13 10646 reflections 445 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.60 e Å−3 Δρmin = −0.65 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810020799/hb5474sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020799/hb5474Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H20N2O3Z = 4
Mr = 324.37F(000) = 688
Triclinic, P1Dx = 1.324 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.0400 (9) ÅCell parameters from 9690 reflections
b = 12.6806 (13) Åθ = 2.8–33.8°
c = 15.5504 (17) ŵ = 0.09 mm1
α = 74.170 (2)°T = 100 K
β = 74.360 (2)°Block, colourless
γ = 76.721 (2)°0.41 × 0.32 × 0.23 mm
V = 1627.9 (3) Å3
Bruker APEXII DUO CCD diffractometer10646 independent reflections
Radiation source: fine-focus sealed tube8773 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 31.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→13
Tmin = 0.964, Tmax = 0.980k = −18→18
30776 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.194H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.1301P)2 + 0.1152P] where P = (Fo2 + 2Fc2)/3
10646 reflections(Δ/σ)max < 0.001
445 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.65 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.07593 (12)0.34205 (9)0.46417 (7)0.0276 (2)
O2A0.22621 (11)0.21688 (8)0.55131 (7)0.0214 (2)
O3A0.96752 (10)0.50727 (7)0.18794 (6)0.01475 (17)
N1A0.44922 (12)0.63318 (8)0.29752 (7)0.01358 (19)
N2A0.68064 (11)0.55873 (8)0.33553 (6)0.01221 (18)
C1A0.79520 (14)0.76316 (10)0.18103 (8)0.0153 (2)
H1AA0.87060.69990.17720.018*
C2A0.83043 (14)0.86714 (10)0.13230 (8)0.0170 (2)
H2AA0.93020.87230.09650.020*
C3A0.72088 (14)0.96366 (10)0.13554 (8)0.0164 (2)
C4A0.57258 (15)0.95372 (10)0.19112 (8)0.0172 (2)
H4AA0.49771.01720.19530.021*
C5A0.53556 (14)0.85052 (10)0.24015 (8)0.0161 (2)
H5AA0.43600.84560.27630.019*
C6A0.64640 (13)0.75385 (9)0.23574 (8)0.0132 (2)
C7A0.59444 (13)0.64791 (9)0.28754 (7)0.0127 (2)
C8A0.43877 (13)0.52957 (9)0.35614 (7)0.0123 (2)
C9A0.31274 (13)0.47294 (9)0.39126 (8)0.0139 (2)
H9AA0.21760.50290.37480.017*
C10A0.33376 (14)0.37013 (9)0.45175 (8)0.0141 (2)
C11A0.47717 (14)0.32492 (10)0.47744 (8)0.0148 (2)
H11A0.48690.25670.51910.018*
C12A0.60436 (14)0.37979 (9)0.44210 (8)0.0141 (2)
H12A0.69960.34980.45840.017*
C13A0.58203 (13)0.48226 (9)0.38085 (7)0.0122 (2)
C14A0.19800 (15)0.31049 (10)0.48803 (8)0.0168 (2)
C15A0.09808 (16)0.15392 (11)0.59046 (10)0.0240 (3)
H15A0.13830.07840.61900.029*
H15B0.05220.15060.54180.029*
C16A−0.02486 (18)0.20524 (12)0.66008 (10)0.0256 (3)
H16A−0.10420.15960.68670.038*
H16B−0.07020.27800.63100.038*
H16C0.02090.21120.70720.038*
C17A0.84315 (13)0.53960 (9)0.34180 (8)0.0138 (2)
H17A0.85010.50880.40520.017*
H17B0.88060.61010.32210.017*
C18A0.94678 (13)0.46049 (10)0.28325 (8)0.0145 (2)
H18A1.04790.43870.29900.017*
H18B0.90110.39390.29750.017*
C19A0.75854 (17)1.07453 (11)0.07806 (10)0.0230 (3)
H19A0.86921.07220.06350.035*
H19B0.70821.13120.11160.035*
H19C0.72231.09090.02250.035*
O1B0.62907 (11)0.10394 (8)0.35690 (7)0.0212 (2)
O2B0.38151 (10)0.10387 (7)0.35342 (6)0.01744 (18)
O3B0.29192 (11)0.76162 (7)0.15387 (6)0.01769 (18)
N1B0.71022 (11)0.49118 (8)0.12914 (6)0.01173 (18)
N2B0.48235 (11)0.56326 (8)0.08697 (6)0.01134 (18)
C1B0.62243 (14)0.78327 (9)0.00981 (8)0.0148 (2)
H1BA0.52240.79900.04490.018*
C2B0.69291 (15)0.86841 (10)−0.05266 (9)0.0184 (2)
H2BA0.63890.9410−0.05870.022*
C3B0.84224 (15)0.84821 (11)−0.10662 (8)0.0196 (2)
C4B0.92369 (15)0.73979 (11)−0.09289 (9)0.0192 (2)
H4BA1.02550.7250−0.12600.023*
C5B0.85548 (14)0.65327 (10)−0.03060 (8)0.0158 (2)
H5BA0.91190.5814−0.02240.019*
C6B0.70215 (13)0.67365 (9)0.01996 (7)0.0123 (2)
C7B0.63190 (12)0.57798 (9)0.08024 (7)0.01131 (19)
C8B0.60714 (12)0.41630 (9)0.17018 (7)0.01138 (19)
C9B0.62468 (13)0.31246 (9)0.22990 (7)0.0124 (2)
H9BA0.71730.28210.24930.015*
C10B0.49860 (13)0.25547 (9)0.25962 (7)0.0128 (2)
C11B0.35857 (13)0.29980 (9)0.22970 (8)0.0138 (2)
H11B0.27790.25860.24960.017*
C12B0.33878 (13)0.40355 (9)0.17128 (8)0.0130 (2)
H12B0.24650.43370.15150.016*
C13B0.46462 (12)0.46028 (9)0.14371 (7)0.01133 (19)
C14B0.51372 (13)0.14745 (9)0.32729 (8)0.0141 (2)
C15B0.38024 (15)0.00252 (10)0.42410 (9)0.0191 (2)
H15C0.38120.01740.48190.023*
H15D0.4716−0.05180.40780.023*
C16B0.23432 (17)−0.04128 (12)0.43262 (10)0.0253 (3)
H16D0.2266−0.10570.48220.038*
H16E0.2383−0.06110.37660.038*
H16F0.14510.01500.44450.038*
C17B0.35660 (13)0.63748 (9)0.04793 (8)0.0135 (2)
H17C0.30820.59610.02220.016*
H17D0.39900.6956−0.00140.016*
C18B0.23360 (13)0.69020 (10)0.11993 (8)0.0159 (2)
H18C0.14640.73220.09320.019*
H18D0.19530.63180.17060.019*
C19B0.9105 (2)0.94054 (13)−0.17975 (10)0.0301 (3)
H19D1.02200.9215−0.19360.045*
H19E0.88011.0081−0.15820.045*
H19F0.87260.9508−0.23400.045*
H1OA0.875 (3)0.5068 (18)0.1692 (14)0.039 (6)*
H1OB0.328 (3)0.7248 (19)0.1973 (15)0.035 (5)*
U11U22U33U12U13U23
O1A0.0201 (5)0.0313 (5)0.0292 (5)−0.0108 (4)−0.0094 (4)0.0060 (4)
O2A0.0170 (4)0.0157 (4)0.0259 (5)−0.0055 (3)−0.0013 (3)0.0032 (3)
O3A0.0102 (4)0.0206 (4)0.0134 (4)−0.0030 (3)−0.0024 (3)−0.0036 (3)
N1A0.0129 (4)0.0138 (4)0.0123 (4)−0.0020 (3)−0.0024 (3)−0.0008 (3)
N2A0.0108 (4)0.0132 (4)0.0113 (4)−0.0018 (3)−0.0021 (3)−0.0011 (3)
C1A0.0133 (5)0.0140 (5)0.0164 (5)−0.0012 (4)−0.0024 (4)−0.0016 (4)
C2A0.0141 (5)0.0154 (5)0.0187 (5)−0.0029 (4)−0.0031 (4)0.0004 (4)
C3A0.0182 (5)0.0140 (5)0.0173 (5)−0.0029 (4)−0.0062 (4)−0.0014 (4)
C4A0.0183 (5)0.0131 (5)0.0187 (5)0.0011 (4)−0.0047 (4)−0.0037 (4)
C5A0.0153 (5)0.0151 (5)0.0167 (5)−0.0008 (4)−0.0027 (4)−0.0041 (4)
C6A0.0129 (5)0.0132 (5)0.0124 (5)−0.0016 (4)−0.0028 (4)−0.0018 (4)
C7A0.0120 (5)0.0128 (5)0.0120 (4)−0.0009 (4)−0.0020 (4)−0.0024 (4)
C8A0.0122 (5)0.0130 (5)0.0106 (4)−0.0016 (4)−0.0017 (4)−0.0020 (4)
C9A0.0117 (5)0.0155 (5)0.0134 (5)−0.0020 (4)−0.0020 (4)−0.0026 (4)
C10A0.0148 (5)0.0145 (5)0.0121 (5)−0.0035 (4)−0.0009 (4)−0.0027 (4)
C11A0.0150 (5)0.0144 (5)0.0132 (5)−0.0023 (4)−0.0020 (4)−0.0011 (4)
C12A0.0127 (5)0.0145 (5)0.0131 (5)−0.0008 (4)−0.0029 (4)−0.0012 (4)
C13A0.0119 (5)0.0130 (5)0.0103 (4)−0.0017 (4)−0.0008 (3)−0.0023 (4)
C14A0.0177 (5)0.0167 (5)0.0149 (5)−0.0049 (4)−0.0017 (4)−0.0021 (4)
C15A0.0205 (6)0.0164 (5)0.0307 (7)−0.0084 (4)0.0015 (5)−0.0008 (5)
C16A0.0277 (7)0.0268 (6)0.0219 (6)−0.0118 (5)−0.0004 (5)−0.0035 (5)
C17A0.0117 (5)0.0163 (5)0.0137 (5)−0.0020 (4)−0.0038 (4)−0.0031 (4)
C18A0.0116 (5)0.0164 (5)0.0142 (5)−0.0001 (4)−0.0041 (4)−0.0021 (4)
C19A0.0263 (7)0.0144 (5)0.0257 (6)−0.0042 (5)−0.0074 (5)0.0022 (5)
O1B0.0168 (4)0.0184 (4)0.0249 (5)−0.0033 (3)−0.0078 (4)0.0044 (3)
O2B0.0155 (4)0.0163 (4)0.0181 (4)−0.0053 (3)−0.0037 (3)0.0021 (3)
O3B0.0189 (4)0.0150 (4)0.0177 (4)−0.0003 (3)−0.0036 (3)−0.0039 (3)
N1B0.0096 (4)0.0128 (4)0.0121 (4)−0.0017 (3)−0.0029 (3)−0.0013 (3)
N2B0.0092 (4)0.0110 (4)0.0126 (4)−0.0003 (3)−0.0035 (3)−0.0009 (3)
C1B0.0140 (5)0.0136 (5)0.0165 (5)−0.0008 (4)−0.0053 (4)−0.0023 (4)
C2B0.0203 (6)0.0148 (5)0.0206 (6)−0.0038 (4)−0.0089 (4)0.0003 (4)
C3B0.0213 (6)0.0207 (6)0.0174 (5)−0.0093 (4)−0.0068 (4)0.0021 (4)
C4B0.0142 (5)0.0233 (6)0.0176 (5)−0.0059 (4)−0.0003 (4)−0.0016 (4)
C5B0.0126 (5)0.0171 (5)0.0161 (5)−0.0023 (4)−0.0023 (4)−0.0021 (4)
C6B0.0110 (5)0.0138 (5)0.0117 (4)−0.0021 (4)−0.0038 (4)−0.0011 (4)
C7B0.0091 (4)0.0129 (5)0.0116 (4)−0.0013 (3)−0.0022 (3)−0.0028 (4)
C8B0.0092 (4)0.0137 (5)0.0111 (4)−0.0015 (3)−0.0020 (3)−0.0031 (4)
C9B0.0098 (4)0.0145 (5)0.0124 (5)−0.0004 (3)−0.0031 (4)−0.0030 (4)
C10B0.0121 (5)0.0130 (5)0.0121 (5)−0.0013 (4)−0.0020 (4)−0.0024 (4)
C11B0.0120 (5)0.0145 (5)0.0143 (5)−0.0027 (4)−0.0027 (4)−0.0020 (4)
C12B0.0100 (5)0.0151 (5)0.0137 (5)−0.0019 (4)−0.0034 (4)−0.0027 (4)
C13B0.0100 (4)0.0123 (4)0.0113 (4)−0.0011 (3)−0.0028 (3)−0.0023 (4)
C14B0.0135 (5)0.0144 (5)0.0137 (5)−0.0027 (4)−0.0021 (4)−0.0025 (4)
C15B0.0195 (6)0.0163 (5)0.0188 (5)−0.0061 (4)−0.0048 (4)0.0033 (4)
C16B0.0210 (6)0.0237 (6)0.0298 (7)−0.0086 (5)−0.0022 (5)−0.0032 (5)
C17B0.0108 (5)0.0134 (5)0.0157 (5)0.0008 (4)−0.0063 (4)−0.0013 (4)
C18B0.0107 (5)0.0154 (5)0.0196 (5)0.0004 (4)−0.0032 (4)−0.0028 (4)
C19B0.0342 (8)0.0284 (7)0.0255 (7)−0.0173 (6)−0.0068 (6)0.0079 (5)
O1A—C14A1.2051 (17)O1B—C14B1.2082 (15)
O2A—C14A1.3422 (15)O2B—C14B1.3483 (14)
O2A—C15A1.4591 (15)O2B—C15B1.4454 (14)
O3A—C18A1.4160 (14)O3B—C18B1.4166 (15)
O3A—H1OA0.96 (2)O3B—H1OB0.81 (2)
N1A—C7A1.3302 (15)N1B—C7B1.3291 (14)
N1A—C8A1.3868 (14)N1B—C8B1.3902 (13)
N2A—C7A1.3752 (15)N2B—C13B1.3787 (14)
N2A—C13A1.3846 (14)N2B—C7B1.3793 (14)
N2A—C17A1.4586 (15)N2B—C17B1.4545 (14)
C1A—C2A1.3899 (16)C1B—C2B1.3875 (16)
C1A—C6A1.3959 (16)C1B—C6B1.3993 (16)
C1A—H1AA0.9300C1B—H1BA0.9300
C2A—C3A1.3896 (17)C2B—C3B1.3928 (18)
C2A—H2AA0.9300C2B—H2BA0.9300
C3A—C4A1.3978 (17)C3B—C4B1.3919 (19)
C3A—C19A1.5038 (17)C3B—C19B1.5072 (18)
C4A—C5A1.3875 (16)C4B—C5B1.3896 (16)
C4A—H4AA0.9300C4B—H4BA0.9300
C5A—C6A1.3985 (16)C5B—C6B1.4017 (16)
C5A—H5AA0.9300C5B—H5BA0.9300
C6A—C7A1.4729 (15)C6B—C7B1.4718 (15)
C8A—C9A1.3923 (15)C8B—C9B1.3919 (15)
C8A—C13A1.4037 (16)C8B—C13B1.4039 (15)
C9A—C10A1.3906 (16)C9B—C10B1.3954 (15)
C9A—H9AA0.9300C9B—H9BA0.9300
C10A—C11A1.4078 (17)C10B—C11B1.4082 (16)
C10A—C14A1.4889 (16)C10B—C14B1.4858 (16)
C11A—C12A1.3879 (15)C11B—C12B1.3840 (16)
C11A—H11A0.9300C11B—H11B0.9300
C12A—C13A1.3945 (16)C12B—C13B1.3929 (14)
C12A—H12A0.9300C12B—H12B0.9300
C15A—C16A1.495 (2)C15B—C16B1.5060 (18)
C15A—H15A0.9700C15B—H15C0.9700
C15A—H15B0.9700C15B—H15D0.9700
C16A—H16A0.9600C16B—H16D0.9600
C16A—H16B0.9600C16B—H16E0.9600
C16A—H16C0.9600C16B—H16F0.9600
C17A—C18A1.5230 (16)C17B—C18B1.5272 (16)
C17A—H17A0.9700C17B—H17C0.9700
C17A—H17B0.9700C17B—H17D0.9700
C18A—H18A0.9700C18B—H18C0.9700
C18A—H18B0.9700C18B—H18D0.9700
C19A—H19A0.9600C19B—H19D0.9600
C19A—H19B0.9600C19B—H19E0.9600
C19A—H19C0.9600C19B—H19F0.9600
C14A—O2A—C15A115.51 (11)C14B—O2B—C15B116.22 (10)
C18A—O3A—H1OA108.5 (13)C18B—O3B—H1OB108.2 (15)
C7A—N1A—C8A105.16 (10)C7B—N1B—C8B105.51 (9)
C7A—N2A—C13A106.47 (9)C13B—N2B—C7B107.03 (9)
C7A—N2A—C17A130.53 (9)C13B—N2B—C17B122.50 (9)
C13A—N2A—C17A123.00 (10)C7B—N2B—C17B130.43 (10)
C2A—C1A—C6A119.88 (11)C2B—C1B—C6B119.85 (11)
C2A—C1A—H1AA120.1C2B—C1B—H1BA120.1
C6A—C1A—H1AA120.1C6B—C1B—H1BA120.1
C3A—C2A—C1A121.93 (11)C1B—C2B—C3B121.82 (12)
C3A—C2A—H2AA119.0C1B—C2B—H2BA119.1
C1A—C2A—H2AA119.0C3B—C2B—H2BA119.1
C2A—C3A—C4A117.82 (11)C4B—C3B—C2B117.94 (11)
C2A—C3A—C19A121.07 (11)C4B—C3B—C19B121.33 (12)
C4A—C3A—C19A121.05 (11)C2B—C3B—C19B120.70 (13)
C5A—C4A—C3A120.93 (11)C5B—C4B—C3B121.13 (11)
C5A—C4A—H4AA119.5C5B—C4B—H4BA119.4
C3A—C4A—H4AA119.5C3B—C4B—H4BA119.4
C4A—C5A—C6A120.73 (11)C4B—C5B—C6B120.40 (11)
C4A—C5A—H5AA119.6C4B—C5B—H5BA119.8
C6A—C5A—H5AA119.6C6B—C5B—H5BA119.8
C1A—C6A—C5A118.69 (10)C1B—C6B—C5B118.70 (10)
C1A—C6A—C7A124.55 (10)C1B—C6B—C7B123.14 (10)
C5A—C6A—C7A116.72 (10)C5B—C6B—C7B118.15 (10)
N1A—C7A—N2A112.70 (10)N1B—C7B—N2B112.04 (9)
N1A—C7A—C6A121.20 (10)N1B—C7B—C6B123.42 (10)
N2A—C7A—C6A125.93 (10)N2B—C7B—C6B124.34 (10)
N1A—C8A—C9A129.96 (11)N1B—C8B—C9B130.89 (10)
N1A—C8A—C13A109.82 (10)N1B—C8B—C13B109.62 (10)
C9A—C8A—C13A120.21 (10)C9B—C8B—C13B119.49 (10)
C10A—C9A—C8A117.82 (11)C8B—C9B—C10B117.73 (10)
C10A—C9A—H9AA121.1C8B—C9B—H9BA121.1
C8A—C9A—H9AA121.1C10B—C9B—H9BA121.1
C9A—C10A—C11A121.28 (11)C9B—C10B—C11B121.69 (10)
C9A—C10A—C14A117.03 (11)C9B—C10B—C14B117.90 (10)
C11A—C10A—C14A121.70 (11)C11B—C10B—C14B120.37 (10)
C12A—C11A—C10A121.52 (11)C12B—C11B—C10B121.18 (10)
C12A—C11A—H11A119.2C12B—C11B—H11B119.4
C10A—C11A—H11A119.2C10B—C11B—H11B119.4
C11A—C12A—C13A116.56 (11)C11B—C12B—C13B116.38 (10)
C11A—C12A—H12A121.7C11B—C12B—H12B121.8
C13A—C12A—H12A121.7C13B—C12B—H12B121.8
N2A—C13A—C12A131.53 (11)N2B—C13B—C12B130.72 (10)
N2A—C13A—C8A105.85 (10)N2B—C13B—C8B105.80 (9)
C12A—C13A—C8A122.58 (10)C12B—C13B—C8B123.46 (10)
O1A—C14A—O2A123.30 (11)O1B—C14B—O2B123.54 (11)
O1A—C14A—C10A124.42 (12)O1B—C14B—C10B124.61 (11)
O2A—C14A—C10A112.29 (11)O2B—C14B—C10B111.84 (10)
O2A—C15A—C16A111.79 (11)O2B—C15B—C16B107.68 (11)
O2A—C15A—H15A109.3O2B—C15B—H15C110.2
C16A—C15A—H15A109.3C16B—C15B—H15C110.2
O2A—C15A—H15B109.3O2B—C15B—H15D110.2
C16A—C15A—H15B109.3C16B—C15B—H15D110.2
H15A—C15A—H15B107.9H15C—C15B—H15D108.5
C15A—C16A—H16A109.5C15B—C16B—H16D109.5
C15A—C16A—H16B109.5C15B—C16B—H16E109.5
H16A—C16A—H16B109.5H16D—C16B—H16E109.5
C15A—C16A—H16C109.5C15B—C16B—H16F109.5
H16A—C16A—H16C109.5H16D—C16B—H16F109.5
H16B—C16A—H16C109.5H16E—C16B—H16F109.5
N2A—C17A—C18A112.15 (9)N2B—C17B—C18B111.50 (9)
N2A—C17A—H17A109.2N2B—C17B—H17C109.3
C18A—C17A—H17A109.2C18B—C17B—H17C109.3
N2A—C17A—H17B109.2N2B—C17B—H17D109.3
C18A—C17A—H17B109.2C18B—C17B—H17D109.3
H17A—C17A—H17B107.9H17C—C17B—H17D108.0
O3A—C18A—C17A113.28 (9)O3B—C18B—C17B112.66 (9)
O3A—C18A—H18A108.9O3B—C18B—H18C109.1
C17A—C18A—H18A108.9C17B—C18B—H18C109.1
O3A—C18A—H18B108.9O3B—C18B—H18D109.1
C17A—C18A—H18B108.9C17B—C18B—H18D109.1
H18A—C18A—H18B107.7H18C—C18B—H18D107.8
C3A—C19A—H19A109.5C3B—C19B—H19D109.5
C3A—C19A—H19B109.5C3B—C19B—H19E109.5
H19A—C19A—H19B109.5H19D—C19B—H19E109.5
C3A—C19A—H19C109.5C3B—C19B—H19F109.5
H19A—C19A—H19C109.5H19D—C19B—H19F109.5
H19B—C19A—H19C109.5H19E—C19B—H19F109.5
C6A—C1A—C2A—C3A−0.49 (18)C6B—C1B—C2B—C3B0.21 (18)
C1A—C2A—C3A—C4A1.04 (18)C1B—C2B—C3B—C4B−3.33 (18)
C1A—C2A—C3A—C19A−176.41 (11)C1B—C2B—C3B—C19B174.55 (12)
C2A—C3A—C4A—C5A−1.06 (18)C2B—C3B—C4B—C5B3.20 (19)
C19A—C3A—C4A—C5A176.39 (11)C19B—C3B—C4B—C5B−174.67 (12)
C3A—C4A—C5A—C6A0.55 (18)C3B—C4B—C5B—C6B0.03 (19)
C2A—C1A—C6A—C5A−0.06 (17)C2B—C1B—C6B—C5B3.06 (17)
C2A—C1A—C6A—C7A177.64 (11)C2B—C1B—C6B—C7B−175.93 (11)
C4A—C5A—C6A—C1A0.03 (17)C4B—C5B—C6B—C1B−3.18 (17)
C4A—C5A—C6A—C7A−177.85 (11)C4B—C5B—C6B—C7B175.86 (11)
C8A—N1A—C7A—N2A0.84 (12)C8B—N1B—C7B—N2B−0.29 (12)
C8A—N1A—C7A—C6A−174.66 (9)C8B—N1B—C7B—C6B−175.30 (10)
C13A—N2A—C7A—N1A−1.15 (12)C13B—N2B—C7B—N1B−0.12 (12)
C17A—N2A—C7A—N1A178.46 (10)C17B—N2B—C7B—N1B177.66 (10)
C13A—N2A—C7A—C6A174.10 (10)C13B—N2B—C7B—C6B174.83 (10)
C17A—N2A—C7A—C6A−6.29 (18)C17B—N2B—C7B—C6B−7.39 (17)
C1A—C6A—C7A—N1A−144.30 (12)C1B—C6B—C7B—N1B−142.71 (11)
C5A—C6A—C7A—N1A33.45 (15)C5B—C6B—C7B—N1B38.29 (15)
C1A—C6A—C7A—N2A40.83 (17)C1B—C6B—C7B—N2B42.90 (16)
C5A—C6A—C7A—N2A−141.43 (11)C5B—C6B—C7B—N2B−136.10 (11)
C7A—N1A—C8A—C9A178.75 (11)C7B—N1B—C8B—C9B−178.72 (11)
C7A—N1A—C8A—C13A−0.21 (12)C7B—N1B—C8B—C13B0.59 (12)
N1A—C8A—C9A—C10A−178.00 (10)N1B—C8B—C9B—C10B−179.58 (10)
C13A—C8A—C9A—C10A0.88 (16)C13B—C8B—C9B—C10B1.16 (15)
C8A—C9A—C10A—C11A0.54 (16)C8B—C9B—C10B—C11B0.93 (16)
C8A—C9A—C10A—C14A−179.57 (10)C8B—C9B—C10B—C14B−176.73 (9)
C9A—C10A—C11A—C12A−1.38 (17)C9B—C10B—C11B—C12B−1.80 (17)
C14A—C10A—C11A—C12A178.74 (10)C14B—C10B—C11B—C12B175.80 (10)
C10A—C11A—C12A—C13A0.71 (16)C10B—C11B—C12B—C13B0.48 (16)
C7A—N2A—C13A—C12A−176.79 (11)C7B—N2B—C13B—C12B−178.09 (11)
C17A—N2A—C13A—C12A3.56 (18)C17B—N2B—C13B—C12B3.91 (17)
C7A—N2A—C13A—C8A0.93 (11)C7B—N2B—C13B—C8B0.47 (11)
C17A—N2A—C13A—C8A−178.72 (9)C17B—N2B—C13B—C8B−177.53 (9)
C11A—C12A—C13A—N2A178.14 (11)C11B—C12B—C13B—N2B−179.96 (11)
C11A—C12A—C13A—C8A0.75 (16)C11B—C12B—C13B—C8B1.69 (16)
N1A—C8A—C13A—N2A−0.46 (12)N1B—C8B—C13B—N2B−0.67 (12)
C9A—C8A—C13A—N2A−179.55 (9)C9B—C8B—C13B—N2B178.74 (9)
N1A—C8A—C13A—C12A177.51 (10)N1B—C8B—C13B—C12B178.03 (9)
C9A—C8A—C13A—C12A−1.57 (17)C9B—C8B—C13B—C12B−2.56 (16)
C15A—O2A—C14A—O1A0.05 (18)C15B—O2B—C14B—O1B3.17 (17)
C15A—O2A—C14A—C10A179.75 (10)C15B—O2B—C14B—C10B−175.76 (9)
C9A—C10A—C14A—O1A4.82 (18)C9B—C10B—C14B—O1B−1.86 (17)
C11A—C10A—C14A—O1A−175.29 (12)C11B—C10B—C14B—O1B−179.55 (11)
C9A—C10A—C14A—O2A−174.87 (10)C9B—C10B—C14B—O2B177.06 (9)
C11A—C10A—C14A—O2A5.02 (16)C11B—C10B—C14B—O2B−0.64 (15)
C14A—O2A—C15A—C16A−77.41 (15)C14B—O2B—C15B—C16B−171.37 (10)
C7A—N2A—C17A—C18A−102.64 (13)C13B—N2B—C17B—C18B73.62 (13)
C13A—N2A—C17A—C18A76.92 (13)C7B—N2B—C17B—C18B−103.86 (13)
N2A—C17A—C18A—O3A70.06 (12)N2B—C17B—C18B—O3B65.15 (12)
Cg1 is the centroid of the N1B/C7B/N2B/C8B/C13B 4,5-dihydro imidazole ring.
D—H···AD—HH···AD···AD—H···A
O3A—H1OA···N1B0.96 (3)1.83 (3)2.7847 (14)173 (2)
O3B—H1OB···N1A0.81 (2)2.08 (2)2.8859 (15)172 (3)
C1A—H1AA···O3A0.932.373.2473 (16)156
C1B—H1BA···O3B0.932.363.2331 (16)157
C12B—H12B···O3Ai0.932.453.2788 (16)149
C15B—H15C···O1Bii0.972.553.2889 (17)133
C18A—H18A···O1Aiii0.972.583.1928 (16)121
C17B—H17C···Cg1iv0.972.703.4194 (13)131
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1B/C7B/N2B/C8B/C13B 4,5-dihydro imidazole ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O3A—H1OA⋯N1B0.96 (3)1.83 (3)2.7847 (14)173 (2)
O3B—H1OB⋯N1A0.81 (2)2.08 (2)2.8859 (15)172 (3)
C1A—H1AA⋯O3A0.932.373.2473 (16)156
C1B—H1BA⋯O3B0.932.363.2331 (16)157
C12B—H12B⋯O3Ai0.932.453.2788 (16)149
C15B—H15C⋯O1Bii0.972.553.2889 (17)133
C18A—H18A⋯O1Aiii0.972.583.1928 (16)121
C17B—H17CCg1iv0.972.703.4194 (13)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  Progress in the proxifan class: heterocyclic congeners as novel potent and selective histamine H(3)-receptor antagonists.

Authors:  Sven Grassmann; Bassem Sadek; Xavier Ligneau; Sigurd Elz; C Robin Ganellin; Jean-Michel Arrang; Jean-Charles Schwartz; Holger Stark; Walter Schunack
Journal:  Eur J Pharm Sci       Date:  2002-05       Impact factor: 4.384

2.  Synthesis of some new 2-substituted-phenyl-1H-benzimidazole-5-carbonitriles and their potent activity against Candida species.

Authors:  Hakan Göker; Canan Kuş; David W Boykin; Sulhiye Yildiz; Nurten Altanlar
Journal:  Bioorg Med Chem       Date:  2002-08       Impact factor: 3.641

3.  Identification of 2-aminobenzimidazole dimers as antibacterial agents.

Authors:  Punit P Seth; Elizabeth A Jefferson; Lisa M Risen; Stephen A Osgood
Journal:  Bioorg Med Chem Lett       Date:  2003-05-19       Impact factor: 2.823

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Potential antitumor agents. 59. Structure-activity relationships for 2-phenylbenzimidazole-4-carboxamides, a new class of "minimal" DNA-intercalating agents which may not act via topoisomerase II.

Authors:  W A Denny; G W Rewcastle; B C Baguley
Journal:  J Med Chem       Date:  1990-02       Impact factor: 7.446

6.  Ethyl 1-sec-butyl-2-phenyl-1H-benzimidazole-5-carboxyl-ate.

Authors:  Natarajan Arumugam; Aisyah Saad Abdul Rahim; Shafida Abd Hamid; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

7.  Ethyl 1-sec-butyl-2-(4-methoxy-phen-yl)-1H-benzimidazole-5-carboxyl-ate.

Authors:  Natarajan Arumugam; Aisyah Saad Abdul Rahim; Hasnah Osman; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-17

8.  Ethyl 1-sec-butyl-2-p-tolyl-1H-benzimidazole-5-carboxyl-ate.

Authors:  Natarajan Arumugam; Aisyah Saad Abdul Rahim; Hasnah Osman; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-30

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  2 in total

1.  Ethyl 1-(2-hy-droxy-eth-yl)-2-(4-meth-oxy-phen-yl)-1H-benzimidazole-5-carboxyl-ate monohydrate.

Authors:  Natarajan Arumugam; Nurziana Ngah; Hasnah Osman; Aisyah Saad Abdul Rahim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-18

2.  Straightforward synthesis of novel 1-(2'-α-O-D-glucopyranosyl ethyl) 2-arylbenzimidazoles.

Authors:  Natarajan Arumugam; Aisyah Saad Abdul Rahim; Shafida Abd Hamid; Hasnah Osman
Journal:  Molecules       Date:  2012-08-17       Impact factor: 4.411

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