| Literature DB >> 22347035 |
Natarajan Arumugam, Nurziana Ngah, Hasnah Osman, Aisyah Saad Abdul Rahim.
Abstract
In the title mol-ecule, C(19)H(20)N(2)O(4)·H(2)O, the benzimidazole ring system is essentially planar [maximum deviation = 0.013 (11) Å] and is inclined to the 4-meth-oxy-phenyl ring by 30.98 (5)°. In the crystal, O-H⋯O and O-H⋯N hydrogen bonds involving the water mol-ecule link neighbouring mol-ecules, forming a two-dimensional network lying parallel to the bc plane. There are also C-H⋯π and π-π inter-actions present. The latter involve inversion-related benzimidazole rings with centroid-centroid distances of 3.5552 (8) and 3.7466 (8) Å.Entities:
Year: 2012 PMID: 22347035 PMCID: PMC3275179 DOI: 10.1107/S1600536812001262
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H20N2O4·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9429 reflections |
| θ = 2.9–25.0° | |
| µ = 0.10 mm−1 | |
| β = 112.899 (5)° | Block, colourless |
| 0.35 × 0.25 × 0.18 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3140 independent reflections |
| Radiation source: fine-focus sealed tube | 2856 reflections with |
| graphite | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 25.0°, θmin = 2.9° |
| φ and ω scan | |
| Absorption correction: multi-scan ( | |
| 13982 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3140 reflections | (Δ/σ)max < 0.001 |
| 249 parameters | Δρmax = 0.19 e Å−3 |
| 3 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.03607 (9) | 0.11092 (10) | −0.10495 (5) | 0.0273 (2) | |
| O2 | 0.13828 (10) | 0.11955 (10) | 0.02067 (5) | 0.0318 (2) | |
| O3 | 1.05219 (9) | −0.64334 (10) | 0.19548 (5) | 0.0299 (2) | |
| O4 | 0.56061 (11) | −0.49083 (10) | −0.20486 (5) | 0.0308 (2) | |
| H4B | 0.5547 (19) | −0.4247 (16) | −0.2358 (9) | 0.055 (6)* | |
| N1 | 0.54707 (10) | −0.27695 (10) | −0.04766 (5) | 0.0195 (2) | |
| N2 | 0.53184 (10) | −0.24427 (10) | 0.06353 (6) | 0.0207 (2) | |
| C1 | 0.79606 (13) | −0.37042 (14) | 0.14242 (7) | 0.0246 (3) | |
| H1A | 0.7743 | −0.2930 | 0.1650 | 0.029* | |
| C2 | 0.90530 (13) | −0.45375 (15) | 0.18365 (7) | 0.0277 (3) | |
| H2A | 0.9560 | −0.4328 | 0.2337 | 0.033* | |
| C3 | 0.94031 (12) | −0.56962 (14) | 0.15058 (7) | 0.0235 (3) | |
| C4 | 0.86192 (13) | −0.60221 (13) | 0.07631 (7) | 0.0243 (3) | |
| H4A | 0.8838 | −0.6799 | 0.0540 | 0.029* | |
| C5 | 0.75072 (13) | −0.51868 (13) | 0.03529 (7) | 0.0231 (3) | |
| H5A | 0.6979 | −0.5421 | −0.0142 | 0.028* | |
| C6 | 0.71694 (12) | −0.40026 (13) | 0.06695 (7) | 0.0206 (3) | |
| C7 | 0.59923 (12) | −0.30890 (12) | 0.02771 (7) | 0.0194 (3) | |
| C8 | 0.43855 (12) | −0.18642 (12) | −0.06055 (7) | 0.0197 (3) | |
| C9 | 0.34925 (13) | −0.12055 (13) | −0.12536 (7) | 0.0219 (3) | |
| H9A | 0.3561 | −0.1332 | −0.1714 | 0.026* | |
| C10 | 0.24989 (12) | −0.03538 (13) | −0.11789 (7) | 0.0224 (3) | |
| H10A | 0.1875 | 0.0093 | −0.1600 | 0.027* | |
| C11 | 0.24092 (12) | −0.01465 (12) | −0.04771 (7) | 0.0217 (3) | |
| C12 | 0.33239 (12) | −0.07870 (12) | 0.01676 (7) | 0.0212 (3) | |
| H12A | 0.3277 | −0.0634 | 0.0631 | 0.025* | |
| C13 | 0.43118 (12) | −0.16652 (12) | 0.00957 (7) | 0.0196 (3) | |
| C14 | 0.13541 (13) | 0.07845 (13) | −0.03903 (7) | 0.0234 (3) | |
| C15 | −0.06792 (14) | 0.20632 (16) | −0.10130 (8) | 0.0328 (3) | |
| H15A | −0.0296 | 0.2992 | −0.0858 | 0.039* | |
| H15B | −0.1042 | 0.1723 | −0.0656 | 0.039* | |
| C16 | −0.17773 (17) | 0.2119 (2) | −0.17790 (10) | 0.0550 (5) | |
| H16A | −0.2463 | 0.2782 | −0.1785 | 0.082* | |
| H16B | −0.2182 | 0.1205 | −0.1914 | 0.082* | |
| H16C | −0.1395 | 0.2407 | −0.2131 | 0.082* | |
| C17 | 1.10325 (14) | −0.74776 (15) | 0.15978 (7) | 0.0292 (3) | |
| H17A | 1.1895 | −0.7819 | 0.1946 | 0.044* | |
| H17B | 1.1148 | −0.7070 | 0.1173 | 0.044* | |
| H17C | 1.0396 | −0.8243 | 0.1435 | 0.044* | |
| C18 | 0.59596 (12) | −0.31970 (13) | −0.10568 (7) | 0.0213 (3) | |
| H18A | 0.6892 | −0.3533 | −0.0822 | 0.026* | |
| H18B | 0.5952 | −0.2393 | −0.1366 | 0.026* | |
| C19 | 0.50589 (13) | −0.43538 (13) | −0.15438 (7) | 0.0235 (3) | |
| H19A | 0.4971 | −0.5104 | −0.1226 | 0.028* | |
| H19B | 0.4155 | −0.3979 | −0.1826 | 0.028* | |
| O5 | 0.54527 (11) | −0.26408 (11) | −0.28926 (5) | 0.0342 (2) | |
| H5B | 0.510 (2) | −0.1856 (14) | −0.2842 (12) | 0.062 (6)* | |
| H5C | 0.542 (2) | −0.267 (2) | −0.3338 (7) | 0.061 (6)* |
| O1 | 0.0236 (5) | 0.0305 (5) | 0.0275 (5) | 0.0048 (4) | 0.0096 (4) | 0.0009 (4) |
| O2 | 0.0326 (5) | 0.0363 (5) | 0.0274 (5) | 0.0044 (4) | 0.0126 (4) | −0.0064 (4) |
| O3 | 0.0288 (5) | 0.0376 (5) | 0.0214 (5) | 0.0106 (4) | 0.0077 (4) | −0.0008 (4) |
| O4 | 0.0533 (6) | 0.0220 (5) | 0.0257 (5) | 0.0010 (4) | 0.0248 (5) | −0.0003 (4) |
| N1 | 0.0216 (5) | 0.0199 (5) | 0.0179 (5) | −0.0012 (4) | 0.0086 (4) | −0.0012 (4) |
| N2 | 0.0217 (5) | 0.0214 (5) | 0.0193 (5) | −0.0026 (4) | 0.0085 (4) | −0.0012 (4) |
| C1 | 0.0262 (6) | 0.0284 (7) | 0.0211 (6) | 0.0019 (5) | 0.0113 (5) | −0.0031 (5) |
| C2 | 0.0274 (7) | 0.0361 (7) | 0.0182 (6) | 0.0024 (6) | 0.0074 (5) | −0.0032 (5) |
| C3 | 0.0216 (6) | 0.0276 (6) | 0.0220 (6) | 0.0015 (5) | 0.0092 (5) | 0.0030 (5) |
| C4 | 0.0282 (7) | 0.0207 (6) | 0.0246 (6) | −0.0003 (5) | 0.0111 (5) | −0.0021 (5) |
| C5 | 0.0255 (6) | 0.0226 (6) | 0.0191 (6) | −0.0044 (5) | 0.0065 (5) | −0.0017 (5) |
| C6 | 0.0212 (6) | 0.0215 (6) | 0.0207 (6) | −0.0039 (5) | 0.0099 (5) | 0.0011 (5) |
| C7 | 0.0213 (6) | 0.0186 (6) | 0.0187 (6) | −0.0057 (5) | 0.0083 (5) | −0.0018 (5) |
| C8 | 0.0210 (6) | 0.0175 (6) | 0.0212 (6) | −0.0044 (5) | 0.0089 (5) | −0.0026 (5) |
| C9 | 0.0262 (6) | 0.0221 (6) | 0.0182 (6) | −0.0035 (5) | 0.0095 (5) | −0.0023 (5) |
| C10 | 0.0229 (6) | 0.0211 (6) | 0.0205 (6) | −0.0024 (5) | 0.0055 (5) | 0.0001 (5) |
| C11 | 0.0211 (6) | 0.0188 (6) | 0.0246 (6) | −0.0041 (5) | 0.0084 (5) | −0.0030 (5) |
| C12 | 0.0236 (6) | 0.0213 (6) | 0.0207 (6) | −0.0062 (5) | 0.0109 (5) | −0.0043 (5) |
| C13 | 0.0203 (6) | 0.0187 (6) | 0.0194 (6) | −0.0050 (5) | 0.0071 (5) | −0.0015 (5) |
| C14 | 0.0232 (6) | 0.0214 (6) | 0.0252 (7) | −0.0043 (5) | 0.0091 (5) | −0.0016 (5) |
| C15 | 0.0277 (7) | 0.0369 (8) | 0.0368 (8) | 0.0092 (6) | 0.0159 (6) | 0.0039 (6) |
| C16 | 0.0359 (9) | 0.0788 (13) | 0.0442 (10) | 0.0216 (9) | 0.0090 (8) | 0.0018 (9) |
| C17 | 0.0282 (7) | 0.0342 (7) | 0.0264 (7) | 0.0070 (6) | 0.0120 (6) | −0.0001 (6) |
| C18 | 0.0252 (6) | 0.0225 (6) | 0.0195 (6) | 0.0001 (5) | 0.0123 (5) | 0.0004 (5) |
| C19 | 0.0302 (7) | 0.0231 (6) | 0.0189 (6) | −0.0008 (5) | 0.0115 (5) | −0.0008 (5) |
| O5 | 0.0533 (6) | 0.0309 (5) | 0.0247 (5) | 0.0084 (5) | 0.0219 (5) | 0.0080 (4) |
| O1—C14 | 1.3391 (16) | C9—C10 | 1.3831 (18) |
| O1—C15 | 1.4533 (15) | C9—H9A | 0.9300 |
| O2—C14 | 1.2100 (16) | C10—C11 | 1.4135 (18) |
| O3—C3 | 1.3633 (15) | C10—H10A | 0.9300 |
| O3—C17 | 1.4324 (16) | C11—C12 | 1.3900 (18) |
| O4—C19 | 1.4200 (15) | C11—C14 | 1.4895 (17) |
| O4—H4B | 0.854 (9) | C12—C13 | 1.3909 (17) |
| N1—C7 | 1.3794 (15) | C12—H12A | 0.9300 |
| N1—C8 | 1.3825 (16) | C15—C16 | 1.490 (2) |
| N1—C18 | 1.4677 (15) | C15—H15A | 0.9700 |
| N2—C7 | 1.3268 (16) | C15—H15B | 0.9700 |
| N2—C13 | 1.3838 (16) | C16—H16A | 0.9600 |
| C1—C2 | 1.3761 (19) | C16—H16B | 0.9600 |
| C1—C6 | 1.4033 (18) | C16—H16C | 0.9600 |
| C1—H1A | 0.9300 | C17—H17A | 0.9600 |
| C2—C3 | 1.3961 (18) | C17—H17B | 0.9600 |
| C2—H2A | 0.9300 | C17—H17C | 0.9600 |
| C3—C4 | 1.3887 (18) | C18—C19 | 1.5215 (17) |
| C4—C5 | 1.3893 (18) | C18—H18A | 0.9700 |
| C4—H4A | 0.9300 | C18—H18B | 0.9700 |
| C5—C6 | 1.3946 (17) | C19—H19A | 0.9700 |
| C5—H5A | 0.9300 | C19—H19B | 0.9700 |
| C6—C7 | 1.4695 (17) | O5—H5B | 0.855 (9) |
| C8—C9 | 1.3940 (17) | O5—H5C | 0.852 (9) |
| C8—C13 | 1.4040 (17) | ||
| C14—O1—C15 | 115.49 (10) | C11—C12—C13 | 117.71 (11) |
| C3—O3—C17 | 116.68 (10) | C11—C12—H12A | 121.1 |
| C19—O4—H4B | 105.8 (13) | C13—C12—H12A | 121.1 |
| C7—N1—C8 | 106.98 (10) | N2—C13—C12 | 129.62 (11) |
| C7—N1—C18 | 129.31 (10) | N2—C13—C8 | 109.94 (10) |
| C8—N1—C18 | 123.63 (10) | C12—C13—C8 | 120.44 (11) |
| C7—N2—C13 | 105.60 (10) | O2—C14—O1 | 123.68 (12) |
| C2—C1—C6 | 121.14 (12) | O2—C14—C11 | 124.06 (12) |
| C2—C1—H1A | 119.4 | O1—C14—C11 | 112.26 (10) |
| C6—C1—H1A | 119.4 | O1—C15—C16 | 106.87 (12) |
| C1—C2—C3 | 120.24 (12) | O1—C15—H15A | 110.3 |
| C1—C2—H2A | 119.9 | C16—C15—H15A | 110.3 |
| C3—C2—H2A | 119.9 | O1—C15—H15B | 110.3 |
| O3—C3—C4 | 124.72 (11) | C16—C15—H15B | 110.3 |
| O3—C3—C2 | 115.81 (11) | H15A—C15—H15B | 108.6 |
| C4—C3—C2 | 119.47 (11) | C15—C16—H16A | 109.5 |
| C3—C4—C5 | 119.97 (12) | C15—C16—H16B | 109.5 |
| C3—C4—H4A | 120.0 | H16A—C16—H16B | 109.5 |
| C5—C4—H4A | 120.0 | C15—C16—H16C | 109.5 |
| C4—C5—C6 | 121.18 (11) | H16A—C16—H16C | 109.5 |
| C4—C5—H5A | 119.4 | H16B—C16—H16C | 109.5 |
| C6—C5—H5A | 119.4 | O3—C17—H17A | 109.5 |
| C5—C6—C1 | 117.97 (11) | O3—C17—H17B | 109.5 |
| C5—C6—C7 | 124.27 (11) | H17A—C17—H17B | 109.5 |
| C1—C6—C7 | 117.67 (11) | O3—C17—H17C | 109.5 |
| N2—C7—N1 | 112.04 (10) | H17A—C17—H17C | 109.5 |
| N2—C7—C6 | 121.88 (11) | H17B—C17—H17C | 109.5 |
| N1—C7—C6 | 126.07 (11) | N1—C18—C19 | 110.49 (10) |
| N1—C8—C9 | 132.13 (11) | N1—C18—H18A | 109.6 |
| N1—C8—C13 | 105.44 (10) | C19—C18—H18A | 109.6 |
| C9—C8—C13 | 122.43 (11) | N1—C18—H18B | 109.6 |
| C10—C9—C8 | 116.70 (11) | C19—C18—H18B | 109.6 |
| C10—C9—H9A | 121.7 | H18A—C18—H18B | 108.1 |
| C8—C9—H9A | 121.7 | O4—C19—C18 | 111.58 (10) |
| C9—C10—C11 | 121.52 (12) | O4—C19—H19A | 109.3 |
| C9—C10—H10A | 119.2 | C18—C19—H19A | 109.3 |
| C11—C10—H10A | 119.2 | O4—C19—H19B | 109.3 |
| C12—C11—C10 | 121.19 (11) | C18—C19—H19B | 109.3 |
| C12—C11—C14 | 116.97 (11) | H19A—C19—H19B | 108.0 |
| C10—C11—C14 | 121.83 (11) | H5B—O5—H5C | 107.1 (19) |
| C6—C1—C2—C3 | 0.6 (2) | N1—C8—C9—C10 | 179.73 (12) |
| C17—O3—C3—C4 | 9.95 (18) | C13—C8—C9—C10 | −1.15 (17) |
| C17—O3—C3—C2 | −170.04 (11) | C8—C9—C10—C11 | 0.95 (17) |
| C1—C2—C3—O3 | 178.34 (12) | C9—C10—C11—C12 | 0.34 (18) |
| C1—C2—C3—C4 | −1.65 (19) | C9—C10—C11—C14 | 179.15 (11) |
| O3—C3—C4—C5 | −179.16 (11) | C10—C11—C12—C13 | −1.45 (17) |
| C2—C3—C4—C5 | 0.83 (19) | C14—C11—C12—C13 | 179.70 (10) |
| C3—C4—C5—C6 | 1.05 (18) | C7—N2—C13—C12 | −179.60 (12) |
| C4—C5—C6—C1 | −2.05 (18) | C7—N2—C13—C8 | 0.40 (13) |
| C4—C5—C6—C7 | −178.52 (11) | C11—C12—C13—N2 | −178.75 (11) |
| C2—C1—C6—C5 | 1.22 (18) | C11—C12—C13—C8 | 1.25 (16) |
| C2—C1—C6—C7 | 177.92 (11) | N1—C8—C13—N2 | −0.62 (13) |
| C13—N2—C7—N1 | −0.02 (13) | C9—C8—C13—N2 | −179.95 (10) |
| C13—N2—C7—C6 | 178.74 (10) | N1—C8—C13—C12 | 179.38 (10) |
| C8—N1—C7—N2 | −0.37 (13) | C9—C8—C13—C12 | 0.05 (17) |
| C18—N1—C7—N2 | 176.36 (11) | C15—O1—C14—O2 | 2.88 (18) |
| C8—N1—C7—C6 | −179.06 (11) | C15—O1—C14—C11 | −177.56 (10) |
| C18—N1—C7—C6 | −2.33 (19) | C12—C11—C14—O2 | 12.75 (18) |
| C5—C6—C7—N2 | 147.34 (12) | C10—C11—C14—O2 | −166.10 (12) |
| C1—C6—C7—N2 | −29.13 (16) | C12—C11—C14—O1 | −166.81 (10) |
| C5—C6—C7—N1 | −34.09 (18) | C10—C11—C14—O1 | 14.34 (16) |
| C1—C6—C7—N1 | 149.44 (12) | C14—O1—C15—C16 | −171.89 (13) |
| C7—N1—C8—C9 | 179.82 (12) | C7—N1—C18—C19 | 103.77 (13) |
| C18—N1—C8—C9 | 2.86 (19) | C8—N1—C18—C19 | −79.98 (13) |
| C7—N1—C8—C13 | 0.59 (12) | N1—C18—C19—O4 | −172.67 (10) |
| C18—N1—C8—C13 | −176.38 (10) |
| H··· | ||||
| O5—H5B···O4i | 0.86 (2) | 1.98 (2) | 2.8165 (15) | 165 (2) |
| O5—H5C···N2ii | 0.85 (1) | 1.95 (1) | 2.8011 (15) | 175 (2) |
| C15—H15A···Cg2iii | 0.97 | 2.95 | 3.7247 (17) | 138 |
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C1–C6 ring.
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5 | 0.86 (2) | 1.98 (2) | 2.8165 (15) | 165 (2) |
| O5—H5 | 0.85 (1) | 1.95 (1) | 2.8011 (15) | 175 (2) |
| C15—H15 | 0.97 | 2.95 | 3.7247 (17) | 138 |
Symmetry codes: (i) ; (ii) ; (iii) .